Wall clock time and date at job start Tue Mar 31 2020 00:13:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46812 * 2 1 4 4 C 1.50701 * 109.47247 * 240.00079 * 2 1 3 5 5 H 1.07995 * 120.00006 * 240.00415 * 4 2 1 6 6 C 1.37875 * 120.00190 * 59.99565 * 4 2 1 7 7 N 1.31520 * 119.99966 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00189 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47255 * 90.00191 * 8 6 4 10 10 H 1.48503 * 109.46900 * 210.00227 * 8 6 4 11 11 H 1.48494 * 109.46968 * 329.99883 * 8 6 4 12 12 N 1.46498 * 109.47036 * 120.00065 * 2 1 3 13 13 C 1.34777 * 119.99828 * 274.72131 * 12 2 1 14 14 O 1.21493 * 119.99885 * 0.28101 * 13 12 2 15 15 C 1.48334 * 120.00028 * 180.27546 * 13 12 2 16 16 N 1.31489 * 127.15442 * 359.69179 * 15 13 12 17 17 O 1.21436 * 111.52802 * 179.78406 * 16 15 13 18 18 C 1.33192 * 111.56475 * 0.43973 * 17 16 15 19 19 C 1.35381 * 106.63508 * 359.79080 * 18 17 16 20 20 C 1.50064 * 124.93564 * 179.80805 * 19 18 17 21 21 C 1.53544 * 108.23483 * 343.95435 * 20 19 18 22 22 H 1.09003 * 109.46454 * 289.17607 * 21 20 19 23 23 C 1.52998 * 109.46828 * 169.19960 * 21 20 19 24 24 C 1.53110 * 109.51112 * 49.18403 * 21 20 19 25 25 C 1.50594 * 129.59920 * 179.97438 * 18 17 16 26 26 H 1.09003 * 109.47189 * 60.00254 * 1 2 3 27 27 H 1.09009 * 109.47238 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47293 * 300.00104 * 1 2 3 29 29 H 0.96995 * 120.00431 * 179.97438 * 7 6 4 30 30 H 0.97001 * 120.00384 * 95.00578 * 12 2 1 31 31 H 1.09001 * 109.71104 * 103.64056 * 20 19 18 32 32 H 1.08999 * 109.70830 * 224.26607 * 20 19 18 33 33 H 1.09009 * 109.46455 * 299.95997 * 23 21 20 34 34 H 1.08997 * 109.46778 * 59.95404 * 23 21 20 35 35 H 1.08999 * 109.47460 * 179.97438 * 23 21 20 36 36 H 1.08996 * 109.43158 * 170.06410 * 24 21 20 37 37 H 1.09004 * 109.38564 * 50.18794 * 24 21 20 38 38 H 1.09007 * 109.69339 * 282.89158 * 25 18 17 39 39 H 1.08997 * 109.69960 * 43.48301 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1204 -4.0080 9 1 1.3428 -2.1618 -4.4119 10 1 2.4865 -0.1414 -5.1123 11 1 3.6293 -1.7582 -3.7122 12 7 2.0183 -0.6906 1.1962 13 6 2.1523 -0.0169 2.3557 14 8 1.8633 1.1619 2.4102 15 6 2.6525 -0.7146 3.5654 16 7 2.9987 -1.9791 3.6667 17 8 3.3726 -2.2501 4.7898 18 6 3.3143 -1.1902 5.5943 19 6 2.8499 -0.1614 4.8469 20 6 2.6210 1.2330 5.3519 21 6 2.6070 1.1919 6.8868 22 1 1.6983 0.6962 7.2285 23 6 2.6460 2.6195 7.4355 24 6 3.8294 0.4187 7.3888 25 6 3.6760 -1.0699 7.0512 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 0.7094 1.1618 -3.4844 30 1 2.2491 -1.6318 1.1526 31 1 3.4246 1.8847 5.0090 32 1 1.6641 1.6044 4.9853 33 1 3.5549 3.1152 7.0941 34 1 1.7758 3.1700 7.0781 35 1 2.6356 2.5904 8.5251 36 1 3.9160 0.5387 8.4687 37 1 4.7266 0.8082 6.9076 38 1 2.8859 -1.5053 7.6630 39 1 4.6158 -1.5885 7.2405 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336410565.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:13:28 Heat of formation + Delta-G solvation = 0.420393 kcal Electronic energy + Delta-G solvation = -21652.679998 eV Core-core repulsion = 18369.653975 eV Total energy + Delta-G solvation = -3283.026023 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -44.93929 -38.87308 -38.22349 -34.89388 -33.74733 -32.55224 -32.34935 -30.39595 -28.92592 -27.22928 -25.28750 -24.37908 -23.67138 -21.99542 -21.00027 -19.93967 -19.12987 -17.81363 -17.55146 -16.59440 -15.80034 -15.24127 -15.10704 -14.57082 -14.32533 -14.03728 -13.99684 -13.56739 -13.41496 -12.99546 -12.83594 -12.43876 -12.27332 -11.94028 -11.74945 -11.36975 -11.15199 -11.10127 -10.98142 -10.86259 -10.77281 -10.62971 -10.36504 -10.24769 -10.00284 -9.41219 -9.07551 -9.04724 -8.57855 -8.00204 -6.13705 -4.22925 1.33807 1.86646 2.94358 3.25149 3.31536 3.34564 3.73059 3.77989 4.24610 4.34427 4.46935 4.52282 4.64946 4.87362 4.96192 5.15381 5.17174 5.19137 5.24347 5.45946 5.52585 5.58328 5.62919 5.69217 5.75750 5.84555 5.91663 6.06120 6.19674 6.30774 6.79118 6.92737 7.10077 7.34507 7.50093 7.66706 7.86442 8.10677 8.16225 8.58772 8.72368 8.97796 9.44062 10.92463 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.031099 B = 0.003927 C = 0.003623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.142435 B = 7128.524166 C = 7727.392328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.263 3.737 3 H 0.052 0.948 4 C -0.535 4.535 5 H 0.062 0.938 6 C 0.067 3.933 7 N -0.884 5.884 8 Si 0.903 3.097 9 H -0.279 1.279 10 H -0.284 1.284 11 H -0.273 1.273 12 N -0.688 5.688 13 C 0.581 3.419 14 O -0.535 6.535 15 C -0.006 4.006 16 N -0.339 5.339 17 O 0.120 5.880 18 C -0.050 4.050 19 C -0.152 4.152 20 C -0.039 4.039 21 C -0.096 4.096 22 H 0.075 0.925 23 C -0.146 4.146 24 C -0.114 4.114 25 C -0.032 4.032 26 H 0.093 0.907 27 H 0.028 0.972 28 H 0.015 0.985 29 H 0.265 0.735 30 H 0.395 0.605 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.057 0.943 34 H 0.059 0.941 35 H 0.055 0.945 36 H 0.080 0.920 37 H 0.071 0.929 38 H 0.092 0.908 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.653 -1.660 20.945 21.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.162 3.838 3 H 0.070 0.930 4 C -0.573 4.573 5 H 0.080 0.920 6 C -0.136 4.136 7 N -0.521 5.521 8 Si 0.731 3.269 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.198 1.198 12 N -0.336 5.336 13 C 0.363 3.637 14 O -0.412 6.412 15 C -0.165 4.165 16 N -0.043 5.043 17 O 0.049 5.951 18 C -0.115 4.115 19 C -0.157 4.157 20 C -0.076 4.076 21 C -0.114 4.114 22 H 0.093 0.907 23 C -0.203 4.203 24 C -0.151 4.151 25 C -0.070 4.070 26 H 0.111 0.889 27 H 0.047 0.953 28 H 0.034 0.966 29 H 0.075 0.925 30 H 0.228 0.772 31 H 0.101 0.899 32 H 0.109 0.891 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.098 0.902 37 H 0.090 0.910 38 H 0.110 0.890 39 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 4.348 -1.667 19.860 20.399 hybrid contribution 0.303 -0.383 -0.692 0.846 sum 4.651 -2.050 19.169 19.831 Atomic orbital electron populations 1.22087 0.98101 0.99334 1.01060 1.18873 0.91276 0.94056 0.79571 0.92992 1.21207 1.32604 1.13334 0.90191 0.91958 1.24878 0.94751 0.94931 0.99047 1.69898 1.35859 1.22376 1.23967 0.86412 0.79239 0.79265 0.82008 1.20474 1.21000 1.19801 1.46509 1.63226 1.13926 1.09945 1.16945 0.79116 0.86101 0.81540 1.90734 1.51575 1.14708 1.84164 1.23503 1.04765 0.90710 0.97488 1.74569 1.14523 1.16522 0.98685 1.84669 1.61362 1.34549 1.14545 1.24068 1.04279 0.86506 0.96618 1.20666 1.04675 0.98854 0.91518 1.20045 1.04038 0.90062 0.93469 1.21320 0.98515 0.96704 0.94893 0.90702 1.21801 1.02434 0.95573 1.00503 1.21720 0.99092 0.92728 1.01592 1.20194 1.03018 0.98468 0.85281 0.88858 0.95327 0.96557 0.92511 0.77158 0.89861 0.89124 0.92392 0.92184 0.92547 0.90180 0.91014 0.88966 0.89053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.77 9.26 37.16 0.34 -3.42 16 2 C 0.26 6.96 2.56 -69.08 -0.18 6.78 16 3 H 0.05 1.55 7.57 -51.93 -0.39 1.15 16 4 C -0.53 -14.67 8.73 -34.44 -0.30 -14.97 16 5 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 6 C 0.07 1.84 5.30 -17.82 -0.09 1.75 16 7 N -0.88 -25.12 11.32 55.43 0.63 -24.49 16 8 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 9 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 12 N -0.69 -15.86 5.07 -55.72 -0.28 -16.15 16 13 C 0.58 12.88 7.82 -12.11 -0.09 12.79 16 14 O -0.54 -13.05 15.75 5.37 0.08 -12.97 16 15 C -0.01 -0.11 7.19 -82.82 -0.60 -0.70 16 16 N -0.34 -5.93 11.89 33.29 0.40 -5.53 16 17 O 0.12 1.75 11.18 19.18 0.21 1.97 16 18 C -0.05 -0.63 7.38 -35.38 -0.26 -0.89 16 19 C -0.15 -2.30 6.04 -104.91 -0.63 -2.94 16 20 C -0.04 -0.50 4.96 -27.91 -0.14 -0.64 16 21 C -0.10 -0.86 2.71 -90.28 -0.24 -1.10 16 22 H 0.07 0.66 8.12 -51.93 -0.42 0.24 16 23 C -0.15 -1.11 9.16 37.16 0.34 -0.77 16 24 C -0.11 -0.81 5.18 -26.46 -0.14 -0.95 16 25 C -0.03 -0.24 6.31 -27.72 -0.17 -0.41 16 26 H 0.09 2.55 6.07 -51.93 -0.32 2.24 16 27 H 0.03 0.68 8.14 -51.92 -0.42 0.26 16 28 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 30 H 0.40 8.48 8.31 -40.82 -0.34 8.14 16 31 H 0.08 1.09 8.12 -51.93 -0.42 0.67 16 32 H 0.09 1.33 7.84 -51.93 -0.41 0.92 16 33 H 0.06 0.44 8.14 -51.92 -0.42 0.01 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.08 0.40 8.11 -51.93 -0.42 -0.02 16 37 H 0.07 0.54 8.12 -51.93 -0.42 0.12 16 38 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 323.97 15.07 4.88 4.88 Total: -1.00 -30.95 323.97 -6.91 -37.86 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -5.64 Total: 3.87 kcal Atomic # 6 Polarization: -3.31 SS G_CDS: -2.17 Total: -5.47 kcal Atomic # 7 Polarization: -46.91 SS G_CDS: 0.74 Total: -46.17 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: 0.30 Total: -11.00 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.95 -6.91 -37.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336410565.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.280 kcal (2) G-P(sol) polarization free energy of solvation -30.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds