Wall clock time and date at job start Tue Mar 31 2020 00:33:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 5 5 C 1.50695 * 109.47581 * 185.00152 * 4 2 1 6 6 C 1.38272 * 119.94303 * 269.72826 * 5 4 2 7 7 C 1.38150 * 120.05195 * 179.72294 * 6 5 4 8 8 C 1.38727 * 119.94279 * 0.57027 * 7 6 5 9 9 O 1.35903 * 120.05454 * 179.67977 * 8 7 6 10 10 C 1.38725 * 119.89129 * 359.70551 * 8 7 6 11 11 C 1.38142 * 119.94717 * 359.97438 * 10 8 7 12 12 N 1.46500 * 109.47473 * 239.99757 * 2 1 3 13 13 C 1.34780 * 119.99910 * 85.00011 * 12 2 1 14 14 O 1.21590 * 119.99633 * 0.02562 * 13 12 2 15 15 N 1.34768 * 119.99810 * 180.02562 * 13 12 2 16 16 C 1.46503 * 119.99756 * 180.02562 * 15 13 12 17 17 C 1.50703 * 109.47259 * 179.97438 * 16 15 13 18 18 H 1.07998 * 120.00121 * 359.97438 * 17 16 15 19 19 C 1.37877 * 120.00102 * 179.97438 * 17 16 15 20 20 N 1.31511 * 120.00170 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00017 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47365 * 89.99697 * 21 19 17 23 23 H 1.48500 * 109.47126 * 210.00238 * 21 19 17 24 24 H 1.48502 * 109.47247 * 329.99593 * 21 19 17 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 28 28 H 1.08998 * 109.47565 * 305.00629 * 4 2 1 29 29 H 1.09000 * 109.46738 * 65.00110 * 4 2 1 30 30 H 1.07998 * 119.97265 * 359.97438 * 6 5 4 31 31 H 1.07996 * 120.02421 * 180.24936 * 7 6 5 32 32 H 0.96695 * 114.00664 * 270.02685 * 9 8 7 33 33 H 1.08010 * 120.02689 * 179.97438 * 10 8 7 34 34 H 1.08000 * 119.97646 * 180.02562 * 11 10 8 35 35 H 0.96994 * 119.99975 * 265.00388 * 12 2 1 36 36 H 0.96998 * 120.00474 * 359.97438 * 15 13 12 37 37 H 1.09001 * 109.47568 * 299.99679 * 16 15 13 38 38 H 1.08996 * 109.47546 * 59.99842 * 16 15 13 39 39 H 0.96996 * 120.00464 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.6148 1.3128 6 6 4.3282 -1.5854 0.7199 7 6 5.7052 -1.4872 0.7718 8 6 6.2989 -0.4198 1.4298 9 8 7.6534 -0.3244 1.4878 10 6 5.5078 0.5496 2.0288 11 6 4.1313 0.4504 1.9684 12 7 2.0184 -0.6906 -1.1961 13 6 2.1471 -0.0183 -2.3571 14 8 1.8584 1.1616 -2.4116 15 7 2.5960 -0.6538 -3.4576 16 6 2.7364 0.0772 -4.7194 17 6 3.2529 -0.8549 -5.7851 18 1 3.4566 -1.8882 -5.5463 19 6 3.4655 -0.3883 -7.0650 20 7 3.2170 0.8699 -7.3561 21 14 4.1050 -1.5438 -8.3861 22 1 2.9593 -2.1876 -9.0776 23 1 4.9082 -0.7745 -9.3701 24 1 4.9560 -2.5879 -7.7609 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.6054 -0.2617 2.1370 29 1 1.7517 -1.7714 1.2056 30 1 3.8655 -2.4188 0.2122 31 1 6.3189 -2.2434 0.3051 32 1 8.0459 -0.7608 2.2563 33 1 5.9677 1.3813 2.5419 34 1 3.5149 1.2050 2.4342 35 1 2.2490 -1.6317 -1.1525 36 1 2.8267 -1.5949 -3.4140 37 1 1.7661 0.4719 -5.0207 38 1 3.4381 0.9006 -4.5862 39 1 3.3661 1.1980 -8.2566 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426422085.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:14 Heat of formation + Delta-G solvation = -91.481511 kcal Electronic energy + Delta-G solvation = -21135.646158 eV Core-core repulsion = 17848.634970 eV Total energy + Delta-G solvation = -3287.011189 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.13472 -40.49224 -38.28771 -36.74806 -35.93042 -34.39955 -32.76124 -31.89692 -30.92167 -28.93339 -26.97764 -24.86818 -23.77146 -23.00238 -21.95889 -21.53184 -19.82205 -19.34910 -18.03306 -17.48133 -16.87235 -16.73300 -16.46850 -16.27437 -16.13445 -15.39383 -15.08445 -14.90272 -14.35720 -14.32737 -14.13749 -13.98837 -13.65944 -13.32233 -13.12957 -12.92825 -12.78565 -12.70533 -12.47117 -12.21886 -12.08627 -11.82695 -11.46632 -11.36753 -11.14912 -10.79195 -10.21538 -9.90242 -9.55227 -9.36007 -8.27601 -6.44112 0.29450 0.43632 1.43152 1.46362 1.57237 1.96984 2.33008 2.40531 2.70058 3.07369 3.32850 3.58775 3.82847 3.92965 4.04772 4.09906 4.33976 4.45970 4.49908 4.55916 4.80418 4.82225 4.94438 4.99647 5.07925 5.11345 5.20342 5.28052 5.33779 5.42268 5.49817 5.51055 5.61563 5.70093 5.78755 5.87158 5.96521 6.32910 6.68100 6.87099 7.25702 7.38234 7.80440 8.84995 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.015485 B = 0.004264 C = 0.003595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.815471 B = 6565.358993 C = 7785.735663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.162 3.838 3 H 0.055 0.945 4 C -0.074 4.074 5 C -0.096 4.096 6 C -0.101 4.101 7 C -0.159 4.159 8 C 0.083 3.917 9 O -0.515 6.515 10 C -0.159 4.159 11 C -0.109 4.109 12 N -0.724 5.724 13 C 0.691 3.309 14 O -0.651 6.651 15 N -0.725 5.725 16 C 0.287 3.713 17 C -0.554 4.554 18 H 0.084 0.916 19 C 0.003 3.997 20 N -0.932 5.932 21 Si 0.986 3.014 22 H -0.269 1.269 23 H -0.284 1.284 24 H -0.256 1.256 25 H 0.075 0.925 26 H 0.025 0.975 27 H 0.088 0.912 28 H 0.114 0.886 29 H 0.104 0.896 30 H 0.143 0.857 31 H 0.134 0.866 32 H 0.408 0.592 33 H 0.135 0.865 34 H 0.143 0.857 35 H 0.406 0.594 36 H 0.403 0.597 37 H -0.016 1.016 38 H -0.020 1.020 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.146 -9.564 23.367 25.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.057 3.943 3 H 0.073 0.927 4 C -0.111 4.111 5 C -0.096 4.096 6 C -0.119 4.119 7 C -0.177 4.177 8 C 0.039 3.961 9 O -0.328 6.328 10 C -0.177 4.177 11 C -0.126 4.126 12 N -0.381 5.381 13 C 0.391 3.609 14 O -0.534 6.534 15 N -0.379 5.379 16 C 0.164 3.836 17 C -0.591 4.591 18 H 0.102 0.898 19 C -0.196 4.196 20 N -0.571 5.571 21 Si 0.809 3.191 22 H -0.194 1.194 23 H -0.210 1.210 24 H -0.180 1.180 25 H 0.094 0.906 26 H 0.044 0.956 27 H 0.107 0.893 28 H 0.133 0.867 29 H 0.122 0.878 30 H 0.161 0.839 31 H 0.151 0.849 32 H 0.266 0.734 33 H 0.153 0.847 34 H 0.161 0.839 35 H 0.243 0.757 36 H 0.238 0.762 37 H 0.002 0.998 38 H -0.002 1.002 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.833 -8.054 22.670 24.073 hybrid contribution 0.771 -0.768 -0.648 1.267 sum 1.604 -8.822 22.022 23.777 Atomic orbital electron populations 1.22160 0.94441 1.03036 1.01961 1.20858 0.94168 0.96213 0.83012 0.92673 1.20921 0.89864 1.03267 0.97047 1.20093 0.96642 0.94984 0.97889 1.21191 0.92772 0.99550 0.98390 1.21633 0.96088 0.98614 1.01384 1.18714 0.83235 0.95096 0.99058 1.84802 1.16608 1.79762 1.51616 1.21612 0.94520 1.00032 1.01565 1.21238 0.94240 0.98032 0.99139 1.45029 1.71584 1.13759 1.07733 1.16344 0.78291 0.84761 0.81480 1.90827 1.59823 1.17114 1.85652 1.45278 1.69321 1.14072 1.09213 1.18355 0.93806 0.91569 0.79920 1.21598 1.45514 0.97309 0.94720 0.89843 1.26076 0.95163 0.97017 1.01355 1.70148 1.48700 1.16627 1.21587 0.85137 0.78431 0.78073 0.77434 1.19439 1.21000 1.17953 0.90578 0.95585 0.89290 0.86734 0.87767 0.83892 0.84857 0.73385 0.84666 0.83925 0.75714 0.76179 0.99782 1.00199 0.92272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.38 9.48 71.98 0.68 -2.70 16 2 C 0.16 3.86 2.56 44.99 0.12 3.98 16 3 H 0.05 1.70 7.58 -2.39 -0.02 1.68 16 4 C -0.07 -1.07 4.89 29.85 0.15 -0.92 16 5 C -0.10 -1.84 4.95 -19.85 -0.10 -1.94 16 6 C -0.10 -1.99 9.09 22.26 0.20 -1.79 16 7 C -0.16 -3.51 9.99 22.37 0.22 -3.29 16 8 C 0.08 1.93 6.70 22.50 0.15 2.08 16 9 O -0.51 -10.96 13.50 -92.46 -1.25 -12.20 16 10 C -0.16 -3.46 9.99 22.36 0.22 -3.23 16 11 C -0.11 -2.18 9.69 22.25 0.22 -1.96 16 12 N -0.72 -20.69 4.54 -457.82 -2.08 -22.77 16 13 C 0.69 29.66 8.53 179.06 1.53 31.18 16 14 O -0.65 -34.83 16.01 -4.00 -0.06 -34.89 16 15 N -0.73 -32.38 5.55 -482.30 -2.68 -35.05 16 16 C 0.29 16.49 5.43 85.63 0.46 16.95 16 17 C -0.55 -30.94 9.28 25.60 0.24 -30.71 16 18 H 0.08 4.20 7.60 -2.91 -0.02 4.18 16 19 C 0.00 0.19 5.46 84.66 0.46 0.65 16 20 N -0.93 -57.60 13.29 21.45 0.28 -57.32 16 21 Si 0.99 43.12 29.54 68.60 2.03 45.14 16 22 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 23 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 24 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 25 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 28 H 0.11 1.13 8.08 -2.39 -0.02 1.11 16 29 H 0.10 1.04 8.08 -2.39 -0.02 1.02 16 30 H 0.14 2.12 7.59 -2.91 -0.02 2.10 16 31 H 0.13 2.64 8.06 -2.91 -0.02 2.62 16 32 H 0.41 4.09 9.06 -74.06 -0.67 3.42 16 33 H 0.14 2.53 8.06 -2.91 -0.02 2.51 16 34 H 0.14 2.24 8.06 -2.91 -0.02 2.22 16 35 H 0.41 8.67 7.86 -92.71 -0.73 7.94 16 36 H 0.40 14.79 8.34 -92.71 -0.77 14.01 16 37 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 38 H -0.02 -1.30 8.14 -2.39 -0.02 -1.32 16 39 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 Total: -1.00 -81.84 337.17 -0.29 -82.14 By element: Atomic # 1 Polarization: 27.74 SS G_CDS: -1.09 Total: 26.65 kcal Atomic # 6 Polarization: 3.75 SS G_CDS: 4.55 Total: 8.30 kcal Atomic # 7 Polarization: -110.67 SS G_CDS: -4.47 Total: -115.14 kcal Atomic # 8 Polarization: -45.78 SS G_CDS: -1.31 Total: -47.09 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.14 kcal Total: -81.84 -0.29 -82.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426422085.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.342 kcal (2) G-P(sol) polarization free energy of solvation -81.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds