Wall clock time and date at job start Tue Mar 31 2020 00:06:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47251 * 2 1 4 4 O 1.42908 * 109.46768 * 179.97438 * 3 2 1 5 5 C 1.35642 * 116.99413 * 180.02562 * 4 3 2 6 6 C 1.39343 * 120.54593 * 359.97438 * 5 4 3 7 7 C 1.38301 * 118.44177 * 179.97438 * 6 5 4 8 8 C 1.38767 * 119.44604 * 0.02562 * 7 6 5 9 9 N 1.31371 * 121.06753 * 359.97438 * 8 7 6 10 10 C 1.32866 * 121.69596 * 359.97438 * 9 8 7 11 11 C 1.47826 * 119.78043 * 180.02562 * 10 9 8 12 12 O 1.21561 * 119.99639 * 173.76701 * 11 10 9 13 13 N 1.34770 * 120.00547 * 353.75870 * 11 10 9 14 14 C 1.46503 * 119.99966 * 2.82135 * 13 11 10 15 15 C 1.46505 * 120.00546 * 182.81620 * 13 11 10 16 16 C 1.50694 * 109.46733 * 90.00150 * 15 13 11 17 17 H 1.07995 * 120.00497 * 0.02562 * 16 15 13 18 18 C 1.37880 * 119.99620 * 180.02562 * 16 15 13 19 19 N 1.31513 * 120.00075 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99938 * 180.02562 * 18 16 15 21 21 H 1.48508 * 109.47000 * 59.99926 * 20 18 16 22 22 H 1.48502 * 109.47434 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47406 * 300.00086 * 20 18 16 24 24 H 1.09007 * 109.46984 * 300.00253 * 1 2 3 25 25 H 1.09003 * 109.46970 * 59.99815 * 1 2 3 26 26 H 1.08995 * 109.47339 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47070 * 239.99544 * 2 1 3 28 28 H 1.09003 * 109.46970 * 120.00185 * 2 1 3 29 29 H 1.09004 * 109.46875 * 60.00155 * 3 2 1 30 30 H 1.08997 * 109.46870 * 299.99879 * 3 2 1 31 31 H 1.07999 * 120.77953 * 359.96062 * 6 5 4 32 32 H 1.07999 * 120.27884 * 179.97438 * 7 6 5 33 33 H 1.08004 * 119.46326 * 179.72111 * 8 7 6 34 34 H 1.08997 * 109.47413 * 83.83081 * 14 13 11 35 35 H 1.08999 * 109.47164 * 203.83691 * 14 13 11 36 36 H 1.09007 * 109.46819 * 323.83611 * 14 13 11 37 37 H 1.09000 * 109.47514 * 210.00413 * 15 13 11 38 38 H 1.08999 * 109.46845 * 330.00559 * 15 13 11 39 39 H 0.97006 * 119.99772 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4691 1.4424 0.0006 5 6 4.0849 2.6510 0.0012 6 6 3.3371 3.8268 0.0007 7 6 4.0098 5.0352 0.0019 8 6 5.3974 5.0435 0.0031 9 7 6.0821 3.9223 0.0035 10 6 5.4811 2.7373 0.0034 11 6 6.2932 1.5021 0.0045 12 8 5.7526 0.4194 0.1187 13 7 7.6330 1.5764 -0.1213 14 6 8.2903 2.8834 -0.1970 15 6 8.4322 0.3500 -0.1823 16 6 8.5742 -0.0860 -1.6178 17 1 8.1155 0.4926 -2.4059 18 6 9.2899 -1.2238 -1.9250 19 7 9.8489 -1.9282 -0.9654 20 14 9.4666 -1.7640 -3.7045 21 1 10.1425 -0.6942 -4.4817 22 1 10.2766 -3.0071 -3.7664 23 1 8.1218 -2.0197 -4.2801 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 2.2576 3.7952 -0.0008 32 1 3.4597 5.9646 0.0012 33 1 5.9230 5.9870 -0.0006 34 1 8.4501 3.2687 0.8100 35 1 9.2503 2.7787 -0.7025 36 1 7.6595 3.5756 -0.7549 37 1 9.4194 0.5382 0.2397 38 1 7.9367 -0.4353 0.3886 39 1 10.3527 -2.7285 -1.1816 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000429592216.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:06:19 Heat of formation + Delta-G solvation = -22.320411 kcal Electronic energy + Delta-G solvation = -21712.163868 eV Core-core repulsion = 18428.151729 eV Total energy + Delta-G solvation = -3284.012138 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.79166 -38.56850 -37.96245 -34.69969 -33.99321 -32.75528 -32.01843 -30.42568 -27.68572 -26.76185 -25.77060 -24.34807 -23.16178 -22.33407 -21.43411 -19.33195 -18.01142 -16.99358 -16.51343 -16.45342 -16.32118 -15.06320 -15.02181 -14.77140 -14.52422 -14.09697 -13.96464 -13.81552 -13.11403 -12.91318 -12.59078 -12.25874 -12.08663 -12.01277 -11.88466 -11.70027 -11.56934 -11.11217 -11.03135 -10.85452 -10.75516 -10.46711 -10.08935 -9.82747 -9.57890 -9.31939 -8.67485 -8.36114 -8.34212 -7.40079 -5.95041 -3.99448 0.83367 1.24855 3.08632 3.33186 3.38314 3.41621 3.45821 3.92405 4.24684 4.47107 4.52601 4.55435 4.74851 4.75000 4.79374 5.01099 5.06563 5.10793 5.22250 5.29993 5.38111 5.47737 5.57262 5.81360 5.90779 5.91856 5.96286 6.11480 6.24711 6.31283 6.41795 6.84232 7.18303 7.33196 7.55848 7.69880 7.87745 8.03056 8.33816 8.57877 8.99647 9.22543 9.65047 11.12795 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.014818 B = 0.005390 C = 0.004288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1889.125036 B = 5193.295717 C = 6528.192861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.124 4.124 3 C 0.051 3.949 4 O -0.266 6.266 5 C 0.135 3.865 6 C -0.180 4.180 7 C -0.119 4.119 8 C 0.044 3.956 9 N -0.410 5.410 10 C 0.060 3.940 11 C 0.554 3.446 12 O -0.520 6.520 13 N -0.581 5.581 14 C 0.081 3.919 15 C 0.244 3.756 16 C -0.524 4.524 17 H 0.056 0.944 18 C 0.061 3.939 19 N -0.896 5.896 20 Si 0.898 3.102 21 H -0.277 1.277 22 H -0.286 1.286 23 H -0.277 1.277 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.064 0.936 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.141 0.859 32 H 0.137 0.863 33 H 0.161 0.839 34 H 0.040 0.960 35 H 0.058 0.942 36 H 0.095 0.905 37 H 0.034 0.966 38 H 0.045 0.955 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.068 13.988 2.756 21.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.162 4.162 3 C -0.024 4.024 4 O -0.176 6.176 5 C 0.084 3.916 6 C -0.206 4.206 7 C -0.139 4.139 8 C -0.115 4.115 9 N -0.123 5.123 10 C -0.079 4.079 11 C 0.338 3.662 12 O -0.396 6.396 13 N -0.312 5.312 14 C -0.063 4.063 15 C 0.125 3.875 16 C -0.562 4.562 17 H 0.075 0.925 18 C -0.141 4.141 19 N -0.535 5.535 20 Si 0.726 3.274 21 H -0.203 1.203 22 H -0.212 1.212 23 H -0.202 1.202 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.083 0.917 27 H 0.097 0.903 28 H 0.096 0.904 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.159 0.841 32 H 0.155 0.845 33 H 0.178 0.822 34 H 0.059 0.941 35 H 0.077 0.923 36 H 0.113 0.887 37 H 0.052 0.948 38 H 0.063 0.937 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -15.225 12.984 2.857 20.212 hybrid contribution -0.924 0.046 -1.025 1.381 sum -16.148 13.029 1.831 20.830 Atomic orbital electron populations 1.21687 0.94495 1.02484 1.01786 1.21460 0.95428 0.94658 1.04652 1.22988 0.79147 0.99427 1.00857 1.86477 1.20305 1.24575 1.86216 1.20036 0.92403 0.85553 0.93603 1.21689 1.00734 0.91974 1.06251 1.22091 0.95828 0.98054 0.97889 1.22846 0.91392 0.96969 1.00271 1.68344 1.37855 0.97468 1.08633 1.21319 0.88832 0.93463 1.04333 1.17541 0.82606 0.86565 0.79485 1.90797 1.71092 1.27599 1.50070 1.48014 1.05478 1.09159 1.68573 1.22178 0.98168 0.85137 1.00814 1.19342 0.89882 0.80782 0.97493 1.21413 1.32670 1.09615 0.92552 0.92534 1.24923 0.95509 0.96105 0.97534 1.69932 1.34779 1.16929 1.31853 0.86565 0.78106 0.77864 0.84908 1.20266 1.21190 1.20242 0.92597 0.92583 0.91707 0.90343 0.90377 0.92213 0.92206 0.84139 0.84521 0.82154 0.94109 0.92298 0.88733 0.94808 0.93735 0.92742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.91 37.16 0.37 -0.81 16 2 C -0.12 -1.41 6.30 -26.73 -0.17 -1.57 16 3 C 0.05 0.61 4.76 37.16 0.18 0.79 16 4 O -0.27 -4.65 8.22 -40.48 -0.33 -4.99 16 5 C 0.13 2.24 6.71 -38.55 -0.26 1.98 16 6 C -0.18 -2.13 9.13 -39.15 -0.36 -2.48 16 7 C -0.12 -1.19 10.10 -39.36 -0.40 -1.59 16 8 C 0.04 0.52 11.17 -17.55 -0.20 0.32 16 9 N -0.41 -6.61 5.99 -9.71 -0.06 -6.66 16 10 C 0.06 1.15 6.65 -82.88 -0.55 0.60 16 11 C 0.55 13.28 7.65 -12.34 -0.09 13.18 16 12 O -0.52 -14.21 14.73 -16.55 -0.24 -14.45 16 13 N -0.58 -14.00 2.86 -184.08 -0.53 -14.52 16 14 C 0.08 1.56 9.36 59.85 0.56 2.12 16 15 C 0.24 6.84 5.15 -5.19 -0.03 6.82 16 16 C -0.52 -15.63 9.39 -34.44 -0.32 -15.95 16 17 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 18 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 19 N -0.90 -27.45 13.29 55.43 0.74 -26.71 16 20 Si 0.90 22.58 29.54 -169.99 -5.02 17.56 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 24 H 0.05 0.39 8.14 -51.92 -0.42 -0.03 16 25 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 28 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 29 H 0.06 0.58 7.70 -51.93 -0.40 0.18 16 30 H 0.06 0.60 7.70 -51.93 -0.40 0.20 16 31 H 0.14 1.22 6.46 -52.49 -0.34 0.88 16 32 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 33 H 0.16 1.31 8.06 -52.48 -0.42 0.88 16 34 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.06 1.13 8.03 -51.93 -0.42 0.72 16 36 H 0.09 1.69 5.16 -53.35 -0.28 1.42 16 37 H 0.03 0.95 8.07 -51.93 -0.42 0.53 16 38 H 0.04 1.38 7.38 -51.93 -0.38 1.00 16 39 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 329.26 15.07 4.96 4.96 Total: -1.00 -35.71 329.26 -7.41 -43.12 By element: Atomic # 1 Polarization: 2.15 SS G_CDS: -5.56 Total: -3.41 kcal Atomic # 6 Polarization: 6.47 SS G_CDS: -1.37 Total: 5.11 kcal Atomic # 7 Polarization: -48.05 SS G_CDS: 0.15 Total: -47.90 kcal Atomic # 8 Polarization: -18.87 SS G_CDS: -0.58 Total: -19.44 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -35.71 -7.41 -43.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000429592216.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.801 kcal (2) G-P(sol) polarization free energy of solvation -35.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds