Wall clock time and date at job start Tue Mar 31 2020 00:06:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47251 * 2 1 4 4 O 1.42908 * 109.46768 * 179.97438 * 3 2 1 5 5 C 1.35642 * 116.99413 * 180.02562 * 4 3 2 6 6 C 1.39343 * 120.54593 * 359.97438 * 5 4 3 7 7 C 1.38301 * 118.44177 * 179.97438 * 6 5 4 8 8 C 1.38767 * 119.44604 * 0.02562 * 7 6 5 9 9 N 1.31371 * 121.06753 * 359.97438 * 8 7 6 10 10 C 1.32866 * 121.69596 * 359.97438 * 9 8 7 11 11 C 1.47826 * 119.78043 * 180.02562 * 10 9 8 12 12 O 1.21561 * 119.99639 * 173.76701 * 11 10 9 13 13 N 1.34770 * 120.00547 * 353.75870 * 11 10 9 14 14 C 1.46503 * 119.99966 * 2.82135 * 13 11 10 15 15 C 1.46505 * 120.00546 * 182.81620 * 13 11 10 16 16 C 1.50694 * 109.46733 * 90.00150 * 15 13 11 17 17 H 1.07995 * 120.00497 * 0.02562 * 16 15 13 18 18 C 1.37880 * 119.99620 * 180.02562 * 16 15 13 19 19 N 1.31513 * 120.00075 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99938 * 180.02562 * 18 16 15 21 21 H 1.48508 * 109.47000 * 59.99926 * 20 18 16 22 22 H 1.48502 * 109.47434 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47406 * 300.00086 * 20 18 16 24 24 H 1.09007 * 109.46984 * 300.00253 * 1 2 3 25 25 H 1.09003 * 109.46970 * 59.99815 * 1 2 3 26 26 H 1.08995 * 109.47339 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47070 * 239.99544 * 2 1 3 28 28 H 1.09003 * 109.46970 * 120.00185 * 2 1 3 29 29 H 1.09004 * 109.46875 * 60.00155 * 3 2 1 30 30 H 1.08997 * 109.46870 * 299.99879 * 3 2 1 31 31 H 1.07999 * 120.77953 * 359.96062 * 6 5 4 32 32 H 1.07999 * 120.27884 * 179.97438 * 7 6 5 33 33 H 1.08004 * 119.46326 * 179.72111 * 8 7 6 34 34 H 1.08997 * 109.47413 * 83.83081 * 14 13 11 35 35 H 1.08999 * 109.47164 * 203.83691 * 14 13 11 36 36 H 1.09007 * 109.46819 * 323.83611 * 14 13 11 37 37 H 1.09000 * 109.47514 * 210.00413 * 15 13 11 38 38 H 1.08999 * 109.46845 * 330.00559 * 15 13 11 39 39 H 0.97006 * 119.99772 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4691 1.4424 0.0006 5 6 4.0849 2.6510 0.0012 6 6 3.3371 3.8268 0.0007 7 6 4.0098 5.0352 0.0019 8 6 5.3974 5.0435 0.0031 9 7 6.0821 3.9223 0.0035 10 6 5.4811 2.7373 0.0034 11 6 6.2932 1.5021 0.0045 12 8 5.7526 0.4194 0.1187 13 7 7.6330 1.5764 -0.1213 14 6 8.2903 2.8834 -0.1970 15 6 8.4322 0.3500 -0.1823 16 6 8.5742 -0.0860 -1.6178 17 1 8.1155 0.4926 -2.4059 18 6 9.2899 -1.2238 -1.9250 19 7 9.8489 -1.9282 -0.9654 20 14 9.4666 -1.7640 -3.7045 21 1 10.1425 -0.6942 -4.4817 22 1 10.2766 -3.0071 -3.7664 23 1 8.1218 -2.0197 -4.2801 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 2.2576 3.7952 -0.0008 32 1 3.4597 5.9646 0.0012 33 1 5.9230 5.9870 -0.0006 34 1 8.4501 3.2687 0.8100 35 1 9.2503 2.7787 -0.7025 36 1 7.6595 3.5756 -0.7549 37 1 9.4194 0.5382 0.2397 38 1 7.9367 -0.4353 0.3886 39 1 10.3527 -2.7285 -1.1816 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000429592216.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:06:18 Heat of formation + Delta-G solvation = -45.985147 kcal Electronic energy + Delta-G solvation = -21713.190048 eV Core-core repulsion = 18428.151729 eV Total energy + Delta-G solvation = -3285.038318 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.96722 -40.07156 -39.26801 -36.58392 -34.93581 -34.75158 -33.30446 -31.56598 -29.74032 -27.61635 -27.40713 -26.00849 -24.44470 -23.74901 -22.39813 -20.89654 -19.09142 -18.71345 -18.32651 -17.85582 -17.39838 -16.91673 -16.34317 -16.30264 -15.87867 -15.40781 -15.17712 -14.84756 -14.50047 -14.34766 -14.00719 -13.73579 -13.63093 -13.40783 -13.11279 -13.00030 -12.90861 -12.75895 -12.55032 -12.45845 -12.20831 -11.92526 -11.75863 -11.64231 -11.00882 -10.76301 -10.65873 -10.09721 -9.59282 -9.24659 -8.23032 -6.39245 -0.28109 0.27236 1.34236 1.39669 1.47306 1.92669 2.09480 2.28761 2.42442 2.88744 3.04923 3.28730 3.61535 3.72787 3.89514 3.96929 4.07881 4.14046 4.24154 4.46155 4.50345 4.52095 4.63745 4.75773 4.84621 4.89345 5.02834 5.04302 5.11817 5.14271 5.18011 5.21207 5.31794 5.53974 5.61057 5.87502 6.04426 6.31171 6.64688 6.71947 6.87540 7.25271 7.45598 8.83907 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.014818 B = 0.005390 C = 0.004288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1889.125036 B = 5193.295717 C = 6528.192861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.044 3.956 4 O -0.312 6.312 5 C 0.121 3.879 6 C -0.170 4.170 7 C -0.086 4.086 8 C 0.049 3.951 9 N -0.431 5.431 10 C 0.008 3.992 11 C 0.542 3.458 12 O -0.576 6.576 13 N -0.595 5.595 14 C 0.086 3.914 15 C 0.259 3.741 16 C -0.546 4.546 17 H 0.049 0.951 18 C 0.008 3.992 19 N -0.928 5.928 20 Si 0.972 3.028 21 H -0.259 1.259 22 H -0.273 1.273 23 H -0.278 1.278 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.066 0.934 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.179 0.821 32 H 0.194 0.806 33 H 0.204 0.796 34 H 0.057 0.943 35 H 0.052 0.948 36 H 0.115 0.885 37 H 0.024 0.976 38 H -0.002 1.002 39 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.277 17.729 1.605 25.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C -0.030 4.030 4 O -0.223 6.223 5 C 0.070 3.930 6 C -0.196 4.196 7 C -0.105 4.105 8 C -0.113 4.113 9 N -0.143 5.143 10 C -0.127 4.127 11 C 0.330 3.670 12 O -0.456 6.456 13 N -0.325 5.325 14 C -0.056 4.056 15 C 0.138 3.862 16 C -0.584 4.584 17 H 0.067 0.933 18 C -0.191 4.191 19 N -0.567 5.567 20 Si 0.795 3.205 21 H -0.184 1.184 22 H -0.197 1.197 23 H -0.204 1.204 24 H 0.090 0.910 25 H 0.089 0.911 26 H 0.085 0.915 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.104 0.896 30 H 0.102 0.898 31 H 0.196 0.804 32 H 0.211 0.789 33 H 0.221 0.779 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.133 0.867 37 H 0.042 0.958 38 H 0.016 0.984 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -17.424 16.746 1.715 24.228 hybrid contribution -0.348 -0.950 -0.585 1.169 sum -17.772 15.796 1.130 23.804 Atomic orbital electron populations 1.21639 0.91377 1.03212 1.03253 1.21513 0.98019 0.94588 1.02441 1.23307 0.76767 0.99813 1.03095 1.86434 1.23191 1.26204 1.86515 1.20251 0.91848 0.86922 0.93990 1.22152 1.02400 0.90568 1.04462 1.22745 0.95257 0.99409 0.93098 1.23681 0.92868 0.96704 0.98055 1.68047 1.39121 0.97615 1.09532 1.20451 0.89404 0.92375 1.10473 1.18417 0.82525 0.88223 0.77797 1.90728 1.72092 1.30349 1.52386 1.48053 1.05996 1.09305 1.69128 1.22356 0.97838 0.83289 1.02143 1.18823 0.89292 0.81840 0.96238 1.21618 1.33340 1.10485 0.92972 0.93298 1.25901 0.94679 0.95776 1.02704 1.70056 1.35017 1.17300 1.34333 0.85416 0.78134 0.78196 0.78730 1.18381 1.19741 1.20376 0.90966 0.91136 0.91457 0.92791 0.92514 0.89616 0.89849 0.80372 0.78880 0.77924 0.92447 0.92904 0.86706 0.95778 0.98356 0.92234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.91 71.98 0.71 -1.28 16 2 C -0.13 -2.98 6.30 30.59 0.19 -2.79 16 3 C 0.04 1.01 4.76 71.98 0.34 1.35 16 4 O -0.31 -11.33 8.22 -68.66 -0.56 -11.89 16 5 C 0.12 3.94 6.71 22.94 0.15 4.09 16 6 C -0.17 -3.28 9.13 22.55 0.21 -3.07 16 7 C -0.09 -1.18 10.10 22.41 0.23 -0.96 16 8 C 0.05 0.91 11.17 84.89 0.95 1.86 16 9 N -0.43 -13.21 5.99 -184.62 -1.11 -14.32 16 10 C 0.01 0.33 6.65 41.93 0.28 0.61 16 11 C 0.54 27.94 7.65 86.78 0.66 28.60 16 12 O -0.58 -34.51 14.73 16.99 0.25 -34.26 16 13 N -0.59 -30.56 2.86 -854.59 -2.44 -33.00 16 14 C 0.09 3.40 9.36 127.77 1.20 4.60 16 15 C 0.26 15.69 5.15 85.63 0.44 16.13 16 16 C -0.55 -34.29 9.39 25.60 0.24 -34.05 16 17 H 0.05 3.07 7.81 -2.91 -0.02 3.04 16 18 C 0.01 0.51 5.46 84.66 0.46 0.98 16 19 N -0.93 -58.98 13.29 21.45 0.28 -58.69 16 20 Si 0.97 47.28 29.54 68.60 2.03 49.31 16 21 H -0.26 -11.83 7.11 99.48 0.71 -11.13 16 22 H -0.27 -12.58 7.11 99.48 0.71 -11.88 16 23 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 24 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 25 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.09 1.45 7.70 -2.39 -0.02 1.43 16 30 H 0.08 1.45 7.70 -2.39 -0.02 1.43 16 31 H 0.18 2.03 6.46 -2.91 -0.02 2.01 16 32 H 0.19 0.64 8.06 -2.91 -0.02 0.61 16 33 H 0.20 2.01 8.06 -2.91 -0.02 1.99 16 34 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.05 2.10 8.03 -2.39 -0.02 2.08 16 36 H 0.12 4.11 5.16 -5.20 -0.03 4.08 16 37 H 0.02 1.47 8.07 -2.39 -0.02 1.45 16 38 H 0.00 -0.11 7.38 -2.39 -0.02 -0.13 16 39 H 0.27 15.90 8.31 -92.70 -0.77 15.13 16 Total: -1.00 -87.52 329.26 5.54 -81.98 By element: Atomic # 1 Polarization: 3.77 SS G_CDS: 1.03 Total: 4.80 kcal Atomic # 6 Polarization: 10.01 SS G_CDS: 6.07 Total: 16.07 kcal Atomic # 7 Polarization: -102.75 SS G_CDS: -3.26 Total: -106.01 kcal Atomic # 8 Polarization: -45.84 SS G_CDS: -0.31 Total: -46.16 kcal Atomic # 14 Polarization: 47.28 SS G_CDS: 2.03 Total: 49.31 kcal Total: -87.52 5.54 -81.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000429592216.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.999 kcal (2) G-P(sol) polarization free energy of solvation -87.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds