Wall clock time and date at job start Tue Mar 31 2020 00:13:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.46225 * 2 1 4 4 C 1.53108 * 109.46855 * 240.01564 * 2 1 3 5 5 C 1.53421 * 109.73216 * 170.12921 * 4 2 1 6 6 C 1.50606 * 108.31302 * 50.01774 * 5 4 2 7 7 O 1.33183 * 129.60787 * 163.19836 * 6 5 4 8 8 N 1.21426 * 111.57026 * 179.97438 * 7 6 5 9 9 C 1.31490 * 111.52675 * 0.42869 * 8 7 6 10 10 C 1.48335 * 127.15719 * 179.79165 * 9 8 7 11 11 O 1.21493 * 120.00109 * 179.69004 * 10 9 8 12 12 N 1.34777 * 119.99563 * 359.68712 * 10 9 8 13 13 C 1.46499 * 119.99665 * 179.72347 * 12 10 9 14 14 C 1.53004 * 109.47198 * 180.27868 * 13 12 10 15 15 C 1.50700 * 109.47208 * 180.02562 * 14 13 12 16 16 H 1.08002 * 119.99770 * 359.97438 * 15 14 13 17 17 C 1.37876 * 119.99720 * 179.97438 * 15 14 13 18 18 N 1.31514 * 120.00513 * 0.02562 * 17 15 14 19 19 Si 1.86809 * 119.99651 * 179.97438 * 17 15 14 20 20 H 1.48493 * 109.47037 * 59.99882 * 19 17 15 21 21 H 1.48501 * 109.46667 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47133 * 299.99829 * 19 17 15 23 23 C 1.35377 * 123.75810 * 343.34229 * 6 5 4 24 24 C 1.50067 * 124.93821 * 359.68558 * 23 6 5 25 25 H 1.08996 * 109.47139 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47271 * 299.98301 * 1 2 3 27 27 H 1.09003 * 109.46787 * 59.97924 * 1 2 3 28 28 H 1.09008 * 109.42416 * 50.05286 * 4 2 1 29 29 H 1.08999 * 109.38964 * 290.18781 * 4 2 1 30 30 H 1.09004 * 109.70015 * 290.31282 * 5 4 2 31 31 H 1.09002 * 109.70012 * 169.72173 * 5 4 2 32 32 H 0.97001 * 120.00485 * 0.02562 * 12 10 9 33 33 H 1.09009 * 109.47454 * 300.27637 * 13 12 10 34 34 H 1.08998 * 109.47492 * 60.27932 * 13 12 10 35 35 H 1.08995 * 109.46638 * 300.00121 * 14 13 12 36 36 H 1.09006 * 109.47139 * 60.00254 * 14 13 12 37 37 H 0.96999 * 120.00239 * 180.02562 * 18 17 15 38 38 H 1.09001 * 109.70637 * 103.64341 * 24 23 6 39 39 H 1.09001 * 109.70915 * 224.26619 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0403 -0.7214 -1.2503 5 6 3.5543 -0.5141 -1.3863 6 6 4.1983 -0.8493 -0.0668 7 8 5.4742 -1.1081 0.2139 8 7 5.6335 -1.3390 1.3953 9 6 4.4986 -1.2761 2.0564 10 6 4.2938 -1.5014 3.5082 11 8 3.1816 -1.4039 3.9871 12 7 5.3417 -1.8144 4.2959 13 6 5.1405 -2.0310 5.7307 14 6 6.4809 -2.3633 6.3893 15 6 6.2738 -2.5867 7.8652 16 1 5.2851 -2.4999 8.2910 17 6 7.3466 -2.9019 8.6719 18 7 8.5507 -3.0071 8.1536 19 14 7.0900 -3.1782 10.5015 20 1 6.1452 -4.3057 10.7041 21 1 8.3911 -3.5008 11.1406 22 1 6.5299 -1.9469 11.1143 23 6 3.5181 -0.9430 1.0999 24 6 2.0416 -0.7234 1.2540 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5135 0.8901 27 1 -0.3633 0.5142 -0.8898 28 1 1.5388 -0.3195 -2.1308 29 1 1.8263 -1.7869 -1.1660 30 1 3.7613 0.5250 -1.6427 31 1 3.9466 -1.1699 -2.1636 32 1 6.2298 -1.8920 3.9136 33 1 4.7289 -1.1274 6.1805 34 1 4.4474 -2.8590 5.8796 35 1 6.8925 -3.2669 5.9397 36 1 7.1740 -1.5352 6.2406 37 1 9.3054 -3.2292 8.7211 38 1 1.5360 -1.6836 1.3566 39 1 1.8511 -0.1109 2.1353 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000433856110.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:13:14 Heat of formation + Delta-G solvation = -5.776137 kcal Electronic energy + Delta-G solvation = -21055.868250 eV Core-core repulsion = 17772.573525 eV Total energy + Delta-G solvation = -3283.294725 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -45.13946 -39.23125 -38.37852 -34.97490 -33.97312 -32.85988 -32.64662 -30.61382 -29.59613 -27.41625 -25.48796 -24.11540 -23.44555 -22.16956 -21.00852 -20.47979 -19.42864 -17.89108 -17.58678 -16.62072 -16.24359 -15.34423 -15.14802 -14.96645 -14.60258 -14.49371 -14.13448 -13.79464 -13.56136 -13.18135 -13.17486 -12.93214 -12.40535 -12.30353 -12.05920 -11.52445 -11.26966 -11.24093 -11.04859 -10.97719 -10.78304 -10.67507 -10.38547 -10.22328 -10.07127 -9.58102 -9.28783 -9.21611 -8.61912 -8.39156 -6.09100 -4.12734 1.12709 1.63835 2.76581 3.31170 3.31275 3.35360 3.39495 3.40210 4.02997 4.31181 4.36215 4.40952 4.46423 4.72280 4.79688 4.96764 5.03246 5.10752 5.27587 5.32598 5.37429 5.43875 5.50128 5.50824 5.59036 5.68556 5.78002 5.93243 6.06843 6.12497 6.27235 6.28651 6.66704 6.77561 7.49248 7.59734 7.78325 7.88495 8.03969 8.24863 8.44671 8.92749 9.52026 11.02473 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.036342 B = 0.003120 C = 0.002893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.262944 B = 8971.102053 C = 9677.016112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.096 4.096 3 H 0.075 0.925 4 C -0.114 4.114 5 C -0.033 4.033 6 C -0.045 4.045 7 O 0.126 5.874 8 N -0.336 5.336 9 C -0.011 4.011 10 C 0.588 3.412 11 O -0.530 6.530 12 N -0.703 5.703 13 C 0.121 3.879 14 C 0.012 3.988 15 C -0.524 4.524 16 H 0.060 0.940 17 C 0.059 3.941 18 N -0.893 5.893 19 Si 0.898 3.102 20 H -0.275 1.275 21 H -0.287 1.287 22 H -0.275 1.275 23 C -0.152 4.152 24 C -0.039 4.039 25 H 0.057 0.943 26 H 0.059 0.941 27 H 0.056 0.944 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.404 0.596 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.024 0.976 36 H 0.024 0.976 37 H 0.263 0.737 38 H 0.083 0.917 39 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.419 5.960 -22.237 26.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.115 4.115 3 H 0.094 0.906 4 C -0.152 4.152 5 C -0.071 4.071 6 C -0.110 4.110 7 O 0.053 5.947 8 N -0.038 5.038 9 C -0.170 4.170 10 C 0.371 3.629 11 O -0.406 6.406 12 N -0.353 5.353 13 C -0.001 4.001 14 C -0.025 4.025 15 C -0.562 4.562 16 H 0.078 0.922 17 C -0.143 4.143 18 N -0.532 5.532 19 Si 0.726 3.274 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.201 1.201 23 C -0.157 4.157 24 C -0.077 4.077 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.099 0.901 29 H 0.090 0.910 30 H 0.112 0.888 31 H 0.111 0.889 32 H 0.239 0.761 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.042 0.958 36 H 0.042 0.958 37 H 0.073 0.927 38 H 0.102 0.898 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -11.767 5.703 -21.365 25.049 hybrid contribution -0.113 -0.137 0.888 0.905 sum -11.880 5.567 -20.478 24.320 Atomic orbital electron populations 1.21801 0.94293 1.02212 1.02033 1.21322 0.96230 0.99852 0.94053 0.90623 1.21729 0.92963 1.01887 0.98580 1.20234 0.94389 1.03105 0.89375 1.24111 0.83687 1.04223 0.98930 1.84680 1.26875 1.62897 1.20268 1.74593 1.22577 1.16706 0.89948 1.23248 0.89931 1.06249 0.97543 1.16917 0.85364 0.78124 0.82522 1.90753 1.23685 1.52275 1.73913 1.46274 1.10231 1.68151 1.10650 1.21858 1.01736 1.00560 0.75924 1.19336 0.90060 0.97507 0.95625 1.20990 0.94477 1.48459 0.92292 0.92210 1.25004 0.95079 0.95121 0.99062 1.69949 0.99144 1.48137 1.35963 0.86552 0.77344 0.78832 0.84689 1.20081 1.21215 1.20086 1.20657 0.98673 1.05680 0.90702 1.20060 0.87251 1.01777 0.98567 0.92378 0.92191 0.92453 0.90053 0.90975 0.88792 0.88887 0.76134 0.92079 0.92065 0.95806 0.95813 0.92727 0.89821 0.89162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.16 37.16 0.34 -0.58 16 2 C -0.10 -0.72 2.71 -90.28 -0.24 -0.96 16 3 H 0.08 0.56 8.12 -51.93 -0.42 0.14 16 4 C -0.11 -0.66 5.18 -26.46 -0.14 -0.80 16 5 C -0.03 -0.21 6.31 -27.71 -0.17 -0.38 16 6 C -0.05 -0.49 7.38 -35.37 -0.26 -0.75 16 7 O 0.13 1.64 11.18 19.21 0.21 1.85 16 8 N -0.34 -5.25 11.89 33.29 0.40 -4.86 16 9 C -0.01 -0.18 7.19 -82.82 -0.60 -0.78 16 10 C 0.59 11.17 7.85 -12.10 -0.09 11.08 16 11 O -0.53 -11.07 16.09 5.37 0.09 -10.98 16 12 N -0.70 -13.72 5.55 -61.09 -0.34 -14.06 16 13 C 0.12 2.66 5.61 -4.04 -0.02 2.64 16 14 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 15 C -0.52 -14.73 9.11 -34.44 -0.31 -15.04 16 16 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 17 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 18 N -0.89 -26.55 13.29 55.43 0.74 -25.82 16 19 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 23 C -0.15 -2.01 6.04 -104.91 -0.63 -2.64 16 24 C -0.04 -0.43 4.96 -27.91 -0.14 -0.57 16 25 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 28 H 0.08 0.31 8.11 -51.92 -0.42 -0.11 16 29 H 0.07 0.45 8.12 -51.93 -0.42 0.03 16 30 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.40 7.45 8.25 -40.82 -0.34 7.11 16 33 H 0.06 1.36 8.14 -51.92 -0.42 0.94 16 34 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 35 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 38 H 0.08 0.93 8.12 -51.93 -0.42 0.51 16 39 H 0.09 1.14 7.84 -51.93 -0.41 0.73 16 LS Contribution 328.80 15.07 4.95 4.95 Total: -1.00 -31.91 328.80 -7.26 -39.17 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -5.78 Total: 0.22 kcal Atomic # 6 Polarization: -4.53 SS G_CDS: -2.52 Total: -7.05 kcal Atomic # 7 Polarization: -45.53 SS G_CDS: 0.79 Total: -44.74 kcal Atomic # 8 Polarization: -9.43 SS G_CDS: 0.30 Total: -9.13 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.91 -7.26 -39.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000433856110.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.399 kcal (2) G-P(sol) polarization free energy of solvation -31.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds