Wall clock time and date at job start Tue Mar 31 2020 00:56:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42905 * 113.99795 * 2 1 4 4 C 1.52992 * 109.46839 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.47137 * 184.99901 * 4 3 2 6 6 C 1.52997 * 109.47257 * 305.00019 * 4 3 2 7 7 N 1.46499 * 109.47418 * 65.00282 * 4 3 2 8 8 C 1.34776 * 120.00310 * 155.00023 * 7 4 3 9 9 O 1.21579 * 119.99906 * 359.97438 * 8 7 4 10 10 N 1.34774 * 119.99754 * 179.97438 * 8 7 4 11 11 C 1.39959 * 119.99793 * 184.51680 * 10 8 7 12 12 C 1.39288 * 119.94264 * 144.36223 * 11 10 8 13 13 C 1.38498 * 120.42732 * 179.97438 * 12 11 10 14 14 C 1.37677 * 120.31854 * 359.97438 * 13 12 11 15 15 C 1.40740 * 119.88848 * 0.02562 * 14 13 12 16 16 C 1.41411 * 120.21295 * 180.02562 * 15 14 13 17 17 H 1.07997 * 119.99623 * 155.37547 * 16 15 14 18 18 C 1.39928 * 119.99913 * 335.37525 * 16 15 14 19 19 N 1.30831 * 120.00010 * 344.59175 * 18 16 15 20 20 Si 1.86791 * 120.00105 * 164.59383 * 18 16 15 21 21 H 1.48500 * 109.47394 * 89.99940 * 20 18 16 22 22 H 1.48495 * 109.47345 * 210.00015 * 20 18 16 23 23 H 1.48506 * 109.47281 * 329.99947 * 20 18 16 24 24 C 1.38226 * 119.95017 * 324.09466 * 11 10 8 25 25 H 1.08998 * 109.46995 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46861 * 299.99840 * 1 2 3 27 27 H 1.08998 * 109.47189 * 59.99491 * 1 2 3 28 28 H 1.08997 * 109.46830 * 60.00357 * 3 2 1 29 29 H 1.08997 * 109.47106 * 300.00157 * 3 2 1 30 30 H 1.08998 * 109.47237 * 180.02562 * 6 4 3 31 31 H 1.09001 * 109.47368 * 299.99639 * 6 4 3 32 32 H 1.08999 * 109.47227 * 60.00377 * 6 4 3 33 33 H 0.97009 * 119.99694 * 334.99512 * 7 4 3 34 34 H 0.97000 * 120.00417 * 4.52553 * 10 8 7 35 35 H 1.07998 * 119.78684 * 0.02562 * 12 11 10 36 36 H 1.07997 * 119.83745 * 180.02562 * 13 12 11 37 37 H 1.08001 * 120.05506 * 180.02562 * 14 13 12 38 38 H 0.96996 * 120.00050 * 179.97438 * 19 18 16 39 39 H 1.08007 * 120.16093 * 359.97438 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.9785 2.1766 0.0889 6 6 3.9790 0.3194 1.1806 7 7 3.9757 0.5645 -1.2527 8 6 5.2195 0.7947 -1.7179 9 8 5.9761 1.5173 -1.0986 10 7 5.6246 0.2237 -2.8695 11 6 6.9451 0.3855 -3.3042 12 6 7.5943 -0.6583 -3.9592 13 6 8.9007 -0.5089 -4.3941 14 6 9.5722 0.6744 -4.1837 15 6 8.9291 1.7379 -3.5232 16 6 9.6121 2.9565 -3.3040 17 1 9.0546 3.8728 -3.1775 18 6 11.0103 2.9752 -3.2510 19 7 11.6742 1.8579 -3.1007 20 14 11.9288 4.5953 -3.3946 21 1 12.1175 5.1790 -2.0422 22 1 13.2543 4.3590 -4.0210 23 1 11.1450 5.5360 -4.2348 24 6 7.6011 1.5828 -3.0876 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.6887 1.8463 0.8900 29 1 1.6886 1.8464 -0.8899 30 1 5.0656 0.2337 1.1804 31 1 3.6516 0.7809 2.1122 32 1 3.5360 -0.6724 1.0910 33 1 3.3719 -0.0119 -1.7470 34 1 5.0010 -0.2994 -3.3972 35 1 7.0753 -1.5899 -4.1299 36 1 9.3948 -1.3244 -4.9013 37 1 10.5908 0.7865 -4.5249 38 1 12.6434 1.8708 -3.0643 39 1 7.0970 2.3944 -2.5840 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000455909438.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:56:40 Heat of formation + Delta-G solvation = -55.317718 kcal Electronic energy + Delta-G solvation = -21149.245959 eV Core-core repulsion = 17863.802950 eV Total energy + Delta-G solvation = -3285.443009 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.96727 -38.40707 -37.21607 -35.12996 -34.21757 -32.97657 -30.85088 -29.72212 -27.68167 -27.52135 -25.87430 -25.20501 -22.34678 -20.90076 -20.56416 -20.00099 -18.02753 -17.54937 -16.79534 -16.27120 -15.68950 -15.30278 -15.00340 -14.75601 -14.55450 -14.31274 -13.83335 -13.33627 -12.96505 -12.88464 -12.64271 -12.31368 -12.08066 -11.97885 -11.59528 -11.32855 -11.23528 -11.02151 -11.00407 -10.61065 -10.42125 -10.08449 -9.99231 -9.66109 -9.45016 -9.13409 -8.82296 -8.75062 -7.34605 -6.78804 -6.62033 -4.24848 2.82462 2.96616 3.12015 3.14231 3.18783 3.28603 3.49296 3.82184 4.02877 4.60615 4.70203 4.74130 4.90897 5.00957 5.06138 5.16222 5.34261 5.42109 5.53368 5.76929 5.82495 6.04003 6.33111 6.37653 6.49852 6.70044 6.83473 6.90881 6.93816 7.13615 7.21152 7.35181 7.46239 7.78872 7.94828 8.10242 8.19910 8.35531 8.56033 8.76246 8.99933 9.07027 9.17086 10.31018 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.026961 B = 0.003653 C = 0.003359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.268698 B = 7662.916209 C = 8334.584007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.387 6.387 3 C 0.053 3.947 4 C 0.166 3.834 5 H 0.101 0.899 6 C -0.160 4.160 7 N -0.744 5.744 8 C 0.697 3.303 9 O -0.565 6.565 10 N -0.682 5.682 11 C 0.166 3.834 12 C -0.263 4.263 13 C -0.093 4.093 14 C -0.175 4.175 15 C 0.117 3.883 16 C -0.456 4.456 17 H 0.076 0.924 18 C 0.074 3.926 19 N -0.797 5.797 20 Si 0.909 3.091 21 H -0.270 1.270 22 H -0.277 1.277 23 H -0.261 1.261 24 C -0.209 4.209 25 H 0.085 0.915 26 H 0.040 0.960 27 H 0.040 0.960 28 H 0.064 0.936 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.395 0.605 34 H 0.393 0.607 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.121 0.879 38 H 0.279 0.721 39 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.550 -2.707 3.697 18.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.305 6.305 3 C -0.025 4.025 4 C 0.061 3.939 5 H 0.118 0.882 6 C -0.219 4.219 7 N -0.401 5.401 8 C 0.397 3.603 9 O -0.441 6.441 10 N -0.328 5.328 11 C 0.074 3.926 12 C -0.285 4.285 13 C -0.112 4.112 14 C -0.195 4.195 15 C 0.114 3.886 16 C -0.485 4.485 17 H 0.094 0.906 18 C -0.143 4.143 19 N -0.422 5.422 20 Si 0.733 3.267 21 H -0.196 1.196 22 H -0.202 1.202 23 H -0.185 1.185 24 C -0.230 4.230 25 H 0.104 0.896 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.082 0.918 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.229 0.771 34 H 0.227 0.773 35 H 0.105 0.895 36 H 0.108 0.892 37 H 0.139 0.861 38 H 0.089 0.911 39 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -16.510 -2.277 4.348 17.224 hybrid contribution -0.385 0.224 -0.415 0.609 sum -16.896 -2.053 3.933 17.468 Atomic orbital electron populations 1.22741 0.81105 1.02748 0.99945 1.87908 1.19557 1.27668 1.95406 1.22911 0.93352 0.85101 1.01102 1.20804 0.90793 0.98417 0.83913 0.88163 1.22101 1.02466 1.00557 0.96759 1.45146 1.14334 1.54493 1.26157 1.16013 0.81919 0.81118 0.81218 1.90975 1.53139 1.40497 1.59472 1.42562 1.12167 1.55341 1.22766 1.17239 0.81857 0.94572 0.98916 1.20032 0.96625 0.97147 1.14705 1.20446 0.93566 0.97142 1.00050 1.21394 1.00861 0.93848 1.03414 1.17521 0.90371 0.93006 0.87691 1.19549 0.90936 0.94925 1.43136 0.90560 1.25894 0.98201 0.97859 0.92312 1.69832 1.09046 1.28077 1.35285 0.86311 0.78724 0.82320 0.79325 1.19554 1.20196 1.18534 1.21093 0.97459 0.96150 1.08320 0.89649 0.94106 0.94101 0.91779 0.92552 0.91735 0.92201 0.91805 0.77091 0.77337 0.89459 0.89156 0.86122 0.91056 0.87021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.32 16 2 O -0.39 -3.69 9.55 -35.23 -0.34 -4.02 16 3 C 0.05 0.48 5.68 37.15 0.21 0.69 16 4 C 0.17 2.06 2.98 -67.94 -0.20 1.85 16 5 H 0.10 1.38 7.58 -51.93 -0.39 0.99 16 6 C -0.16 -2.00 9.29 37.16 0.35 -1.66 16 7 N -0.74 -10.33 5.06 -58.68 -0.30 -10.62 16 8 C 0.70 13.28 8.36 -86.92 -0.73 12.55 16 9 O -0.57 -13.46 13.49 5.30 0.07 -13.38 16 10 N -0.68 -12.80 5.34 -14.27 -0.08 -12.88 16 11 C 0.17 3.92 6.28 -83.76 -0.53 3.39 16 12 C -0.26 -6.01 9.97 -39.10 -0.39 -6.40 16 13 C -0.09 -2.24 10.02 -39.69 -0.40 -2.64 16 14 C -0.18 -4.74 8.69 -38.84 -0.34 -5.07 16 15 C 0.12 3.31 5.58 -106.85 -0.60 2.72 16 16 C -0.46 -12.83 9.06 -37.74 -0.34 -13.17 16 17 H 0.08 2.09 7.89 -52.49 -0.41 1.68 16 18 C 0.07 1.95 5.19 -17.35 -0.09 1.86 16 19 N -0.80 -21.49 10.82 55.55 0.60 -20.89 16 20 Si 0.91 19.53 29.59 -169.99 -5.03 14.50 16 21 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 22 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 23 H -0.26 -5.55 7.11 56.52 0.40 -5.14 16 24 C -0.21 -5.60 8.43 -38.69 -0.33 -5.92 16 25 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.04 0.23 8.14 -51.93 -0.42 -0.20 16 27 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.79 7.56 -51.93 -0.39 0.39 16 33 H 0.40 4.49 8.40 -40.82 -0.34 4.15 16 34 H 0.39 5.74 8.84 -40.82 -0.36 5.38 16 35 H 0.09 1.73 8.06 -52.49 -0.42 1.30 16 36 H 0.09 1.92 8.06 -52.49 -0.42 1.50 16 37 H 0.12 3.33 6.07 -52.49 -0.32 3.02 16 38 H 0.28 6.81 8.30 -40.82 -0.34 6.48 16 39 H 0.11 3.11 6.28 -52.48 -0.33 2.78 16 LS Contribution 329.72 15.07 4.97 4.97 Total: -1.00 -32.62 329.72 -7.85 -40.47 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: -5.49 Total: 12.34 kcal Atomic # 6 Polarization: -8.22 SS G_CDS: -2.27 Total: -10.48 kcal Atomic # 7 Polarization: -44.62 SS G_CDS: 0.23 Total: -44.39 kcal Atomic # 8 Polarization: -17.14 SS G_CDS: -0.27 Total: -17.41 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -5.03 Total: 14.50 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.62 -7.85 -40.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455909438.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.843 kcal (2) G-P(sol) polarization free energy of solvation -32.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds