Wall clock time and date at job start Tue Mar 31 2020 00:36:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42898 * 113.99446 * 2 1 4 4 C 1.53005 * 109.47126 * 180.02562 * 3 2 1 5 5 H 1.08996 * 109.46664 * 305.00105 * 4 3 2 6 6 C 1.52998 * 109.46758 * 64.99968 * 4 3 2 7 7 C 1.53001 * 109.47254 * 185.00025 * 4 3 2 8 8 C 1.50695 * 109.47161 * 175.00212 * 7 4 3 9 9 O 1.21281 * 120.00219 * 359.97438 * 8 7 4 10 10 N 1.34770 * 120.00232 * 180.02562 * 8 7 4 11 11 C 1.39470 * 120.00462 * 174.97930 * 10 8 7 12 12 C 1.38598 * 119.58050 * 174.22042 * 11 10 8 13 13 C 1.40811 * 118.79281 * 179.71904 * 12 11 10 14 14 C 1.41541 * 120.99880 * 179.97438 * 13 12 11 15 15 H 1.08000 * 120.00435 * 152.73219 * 14 13 12 16 16 C 1.40034 * 119.99764 * 332.73414 * 14 13 12 17 17 N 1.30746 * 119.99894 * 341.63468 * 16 14 13 18 18 Si 1.86800 * 119.99992 * 161.63621 * 16 14 13 19 19 H 1.48497 * 109.47020 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47173 * 120.00142 * 18 16 14 21 21 H 1.48504 * 109.46953 * 240.00024 * 18 16 14 22 22 C 1.41177 * 118.00991 * 0.02562 * 13 12 11 23 23 C 1.37587 * 119.01130 * 359.97438 * 22 13 12 24 24 N 1.32082 * 121.11288 * 0.02562 * 23 22 13 25 25 H 1.09002 * 109.47080 * 299.99309 * 1 2 3 26 26 H 1.08995 * 109.47591 * 60.00051 * 1 2 3 27 27 H 1.09004 * 109.46766 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47355 * 60.00409 * 3 2 1 29 29 H 1.09003 * 109.47407 * 300.00057 * 3 2 1 30 30 H 1.09010 * 109.46438 * 180.02562 * 6 4 3 31 31 H 1.08996 * 109.47128 * 299.99583 * 6 4 3 32 32 H 1.08996 * 109.47421 * 60.00601 * 6 4 3 33 33 H 1.09002 * 109.47051 * 55.00037 * 7 4 3 34 34 H 1.09001 * 109.47085 * 294.99725 * 7 4 3 35 35 H 0.97004 * 120.00074 * 354.97012 * 10 8 7 36 36 H 1.07997 * 120.60355 * 359.74249 * 12 11 10 37 37 H 0.96997 * 119.99733 * 179.97438 * 17 16 14 38 38 H 1.08002 * 120.49509 * 179.97438 * 22 13 12 39 39 H 1.08010 * 119.44298 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 1 3.8513 0.5684 0.8409 6 6 3.9951 0.5371 -1.3083 7 6 4.1572 2.5771 0.1251 8 6 5.6537 2.4497 0.2479 9 8 6.1719 1.3532 0.2365 10 7 6.4162 3.5540 0.3714 11 6 7.7884 3.4333 0.5901 12 6 8.5828 4.5690 0.5959 13 6 9.9652 4.4285 0.8242 14 6 10.8198 5.5566 0.8395 15 1 11.7313 5.5358 1.4184 16 6 10.4835 6.6998 0.1040 17 7 9.6044 6.6213 -0.8606 18 14 11.2910 8.3368 0.5008 19 1 12.2421 8.1594 1.6273 20 1 12.0234 8.8299 -0.6932 21 1 10.2487 9.3228 0.8843 22 6 10.4734 3.1286 1.0363 23 6 9.6060 2.0608 1.0122 24 7 8.3149 2.2351 0.7946 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.6885 1.8464 0.8900 29 1 1.6884 1.8464 -0.8900 30 1 5.0817 0.4508 -1.3085 31 1 3.5521 -0.4548 -1.3978 32 1 3.6791 1.1535 -2.1499 33 1 3.7608 3.0734 1.0109 34 1 3.9141 3.1649 -0.7601 35 1 6.0107 4.4330 0.3082 36 1 8.1494 5.5439 0.4287 37 1 9.3712 7.4132 -1.3698 38 1 11.5274 2.9745 1.2148 39 1 9.9874 1.0632 1.1733 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000531924610.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:36:31 Heat of formation + Delta-G solvation = -58.261836 kcal Electronic energy + Delta-G solvation = -20992.238638 eV Core-core repulsion = 17706.667962 eV Total energy + Delta-G solvation = -3285.570675 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.76133 -38.38603 -37.69399 -34.79753 -34.11675 -33.69343 -30.59071 -29.25911 -27.65533 -27.12039 -25.98206 -25.48992 -22.10507 -21.83774 -20.30967 -19.47707 -17.64868 -17.18001 -16.25338 -16.12994 -15.81631 -15.19563 -15.12267 -14.94349 -14.24992 -13.96737 -13.91645 -13.42961 -13.09327 -12.78233 -12.64149 -12.51626 -12.18821 -11.93862 -11.65146 -11.45046 -11.25907 -11.01933 -10.91317 -10.83378 -10.64999 -10.29033 -10.17243 -9.81418 -9.69145 -9.34099 -9.26170 -7.99683 -7.73233 -7.03350 -6.85068 -4.61472 2.55217 2.75974 3.01038 3.06545 3.18115 3.40549 3.47918 3.84310 3.88448 4.64718 4.79971 4.85162 4.96421 5.11732 5.14388 5.28652 5.35218 5.38894 5.43509 5.57215 5.65953 5.78338 5.92166 5.99930 6.23144 6.38070 6.56771 6.62524 6.67122 6.79823 6.93024 7.01675 7.06389 7.37242 7.45274 7.77006 7.92099 8.21493 8.41765 8.69367 8.73443 8.90708 9.67653 10.06065 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.032292 B = 0.003333 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.886327 B = 8397.668233 C = 9020.655985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.387 6.387 3 C 0.066 3.934 4 C -0.073 4.073 5 H 0.088 0.912 6 C -0.149 4.149 7 C -0.136 4.136 8 C 0.499 3.501 9 O -0.476 6.476 10 N -0.661 5.661 11 C 0.339 3.661 12 C -0.243 4.243 13 C 0.147 3.853 14 C -0.461 4.461 15 H 0.083 0.917 16 C 0.080 3.920 17 N -0.787 5.787 18 Si 0.909 3.091 19 H -0.259 1.259 20 H -0.274 1.274 21 H -0.271 1.271 22 C -0.283 4.283 23 C 0.120 3.880 24 N -0.554 5.554 25 H 0.039 0.961 26 H 0.039 0.961 27 H 0.084 0.916 28 H 0.048 0.952 29 H 0.049 0.951 30 H 0.078 0.922 31 H 0.057 0.943 32 H 0.043 0.957 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.407 0.593 36 H 0.120 0.880 37 H 0.281 0.719 38 H 0.102 0.898 39 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.239 -2.044 0.228 14.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.306 6.306 3 C -0.011 4.011 4 C -0.092 4.092 5 H 0.106 0.894 6 C -0.206 4.206 7 C -0.177 4.177 8 C 0.284 3.716 9 O -0.347 6.347 10 N -0.307 5.307 11 C 0.114 3.886 12 C -0.268 4.268 13 C 0.138 3.862 14 C -0.492 4.492 15 H 0.101 0.899 16 C -0.139 4.139 17 N -0.413 5.413 18 Si 0.733 3.267 19 H -0.183 1.183 20 H -0.199 1.199 21 H -0.196 1.196 22 C -0.307 4.307 23 C -0.035 4.035 24 N -0.273 5.273 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.102 0.898 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.097 0.903 31 H 0.076 0.924 32 H 0.062 0.938 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.241 0.759 36 H 0.138 0.862 37 H 0.092 0.908 38 H 0.121 0.879 39 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -14.498 -3.658 0.022 14.952 hybrid contribution 0.426 2.429 -0.019 2.466 sum -14.072 -1.229 0.003 14.125 Atomic orbital electron populations 1.22722 0.81401 1.02606 0.99783 1.87903 1.19280 1.28062 1.95351 1.22626 0.94028 0.84501 0.99912 1.20802 0.91559 0.95540 1.01278 0.89409 1.21889 1.03566 1.00247 0.94901 1.21665 0.93174 0.98810 1.04013 1.20518 0.88569 0.84892 0.77612 1.90749 1.74000 1.25365 1.44546 1.43494 1.06549 1.09370 1.71317 1.18168 0.82838 0.90932 0.96638 1.21408 0.93966 0.96442 1.14991 1.17561 0.91137 0.91885 0.85575 1.19569 1.06869 0.96796 1.25937 0.89893 1.25936 0.94196 1.00889 0.92902 1.69805 1.26853 1.31107 1.13492 0.86257 0.79936 0.80919 0.79620 1.18267 1.19911 1.19636 1.21920 0.99083 0.93663 1.16042 1.21773 0.88353 0.97379 0.95967 1.67199 1.14095 1.23092 1.22947 0.94235 0.94227 0.89765 0.93391 0.93308 0.90275 0.92396 0.93753 0.89088 0.89054 0.75877 0.86193 0.90777 0.87944 0.85860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.37 16 2 O -0.39 -4.60 10.24 -35.23 -0.36 -4.96 16 3 C 0.07 0.70 5.32 37.16 0.20 0.89 16 4 C -0.07 -0.95 2.27 -90.62 -0.21 -1.15 16 5 H 0.09 1.32 7.95 -51.93 -0.41 0.91 16 6 C -0.15 -2.10 8.83 37.16 0.33 -1.77 16 7 C -0.14 -1.69 5.18 -27.88 -0.14 -1.83 16 8 C 0.50 9.08 7.50 -10.99 -0.08 9.00 16 9 O -0.48 -10.62 12.26 5.56 0.07 -10.55 16 10 N -0.66 -12.68 5.39 -11.49 -0.06 -12.74 16 11 C 0.34 8.17 7.40 -154.71 -1.14 7.02 16 12 C -0.24 -6.11 8.60 -38.48 -0.33 -6.44 16 13 C 0.15 3.85 5.55 -106.55 -0.59 3.26 16 14 C -0.46 -11.82 9.10 -37.65 -0.34 -12.16 16 15 H 0.08 2.05 7.91 -52.49 -0.42 1.63 16 16 C 0.08 1.93 5.14 -17.34 -0.09 1.84 16 17 N -0.79 -19.43 11.25 55.55 0.63 -18.80 16 18 Si 0.91 17.80 29.60 -169.99 -5.03 12.77 16 19 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 20 H -0.27 -5.31 7.11 56.52 0.40 -4.90 16 21 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 22 C -0.28 -6.98 9.90 -38.70 -0.38 -7.36 16 23 C 0.12 2.88 11.15 -17.68 -0.20 2.69 16 24 N -0.55 -14.13 7.89 -12.52 -0.10 -14.23 16 25 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 26 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 27 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.08 1.36 5.95 -51.92 -0.31 1.05 16 31 H 0.06 0.80 7.82 -51.93 -0.41 0.39 16 32 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 35 H 0.41 6.28 8.70 -40.82 -0.36 5.93 16 36 H 0.12 2.98 6.52 -52.49 -0.34 2.64 16 37 H 0.28 6.25 8.29 -40.82 -0.34 5.91 16 38 H 0.10 2.32 8.06 -52.49 -0.42 1.89 16 39 H 0.12 2.60 8.06 -52.48 -0.42 2.18 16 LS Contribution 329.30 15.07 4.96 4.96 Total: -1.00 -31.59 329.30 -7.37 -38.97 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -5.60 Total: 9.22 kcal Atomic # 6 Polarization: -2.76 SS G_CDS: -1.87 Total: -4.64 kcal Atomic # 7 Polarization: -46.24 SS G_CDS: 0.46 Total: -45.77 kcal Atomic # 8 Polarization: -15.22 SS G_CDS: -0.29 Total: -15.51 kcal Atomic # 14 Polarization: 17.80 SS G_CDS: -5.03 Total: 12.77 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.59 -7.37 -38.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531924610.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.294 kcal (2) G-P(sol) polarization free energy of solvation -31.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds