Wall clock time and date at job start Tue Mar 31 2020 00:36:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42898 * 113.99446 * 2 1 4 4 C 1.53005 * 109.47126 * 180.02562 * 3 2 1 5 5 H 1.08996 * 109.46664 * 305.00105 * 4 3 2 6 6 C 1.52998 * 109.46758 * 64.99968 * 4 3 2 7 7 C 1.53001 * 109.47254 * 185.00025 * 4 3 2 8 8 C 1.50695 * 109.47161 * 175.00212 * 7 4 3 9 9 O 1.21281 * 120.00219 * 359.97438 * 8 7 4 10 10 N 1.34770 * 120.00232 * 180.02562 * 8 7 4 11 11 C 1.39470 * 120.00462 * 174.97930 * 10 8 7 12 12 C 1.38598 * 119.58050 * 174.22042 * 11 10 8 13 13 C 1.40811 * 118.79281 * 179.71904 * 12 11 10 14 14 C 1.41541 * 120.99880 * 179.97438 * 13 12 11 15 15 H 1.08000 * 120.00435 * 152.73219 * 14 13 12 16 16 C 1.40034 * 119.99764 * 332.73414 * 14 13 12 17 17 N 1.30746 * 119.99894 * 341.63468 * 16 14 13 18 18 Si 1.86800 * 119.99992 * 161.63621 * 16 14 13 19 19 H 1.48497 * 109.47020 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47173 * 120.00142 * 18 16 14 21 21 H 1.48504 * 109.46953 * 240.00024 * 18 16 14 22 22 C 1.41177 * 118.00991 * 0.02562 * 13 12 11 23 23 C 1.37587 * 119.01130 * 359.97438 * 22 13 12 24 24 N 1.32082 * 121.11288 * 0.02562 * 23 22 13 25 25 H 1.09002 * 109.47080 * 299.99309 * 1 2 3 26 26 H 1.08995 * 109.47591 * 60.00051 * 1 2 3 27 27 H 1.09004 * 109.46766 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47355 * 60.00409 * 3 2 1 29 29 H 1.09003 * 109.47407 * 300.00057 * 3 2 1 30 30 H 1.09010 * 109.46438 * 180.02562 * 6 4 3 31 31 H 1.08996 * 109.47128 * 299.99583 * 6 4 3 32 32 H 1.08996 * 109.47421 * 60.00601 * 6 4 3 33 33 H 1.09002 * 109.47051 * 55.00037 * 7 4 3 34 34 H 1.09001 * 109.47085 * 294.99725 * 7 4 3 35 35 H 0.97004 * 120.00074 * 354.97012 * 10 8 7 36 36 H 1.07997 * 120.60355 * 359.74249 * 12 11 10 37 37 H 0.96997 * 119.99733 * 179.97438 * 17 16 14 38 38 H 1.08002 * 120.49509 * 179.97438 * 22 13 12 39 39 H 1.08010 * 119.44298 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 1 3.8513 0.5684 0.8409 6 6 3.9951 0.5371 -1.3083 7 6 4.1572 2.5771 0.1251 8 6 5.6537 2.4497 0.2479 9 8 6.1719 1.3532 0.2365 10 7 6.4162 3.5540 0.3714 11 6 7.7884 3.4333 0.5901 12 6 8.5828 4.5690 0.5959 13 6 9.9652 4.4285 0.8242 14 6 10.8198 5.5566 0.8395 15 1 11.7313 5.5358 1.4184 16 6 10.4835 6.6998 0.1040 17 7 9.6044 6.6213 -0.8606 18 14 11.2910 8.3368 0.5008 19 1 12.2421 8.1594 1.6273 20 1 12.0234 8.8299 -0.6932 21 1 10.2487 9.3228 0.8843 22 6 10.4734 3.1286 1.0363 23 6 9.6060 2.0608 1.0122 24 7 8.3149 2.2351 0.7946 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.6885 1.8464 0.8900 29 1 1.6884 1.8464 -0.8900 30 1 5.0817 0.4508 -1.3085 31 1 3.5521 -0.4548 -1.3978 32 1 3.6791 1.1535 -2.1499 33 1 3.7608 3.0734 1.0109 34 1 3.9141 3.1649 -0.7601 35 1 6.0107 4.4330 0.3082 36 1 8.1494 5.5439 0.4287 37 1 9.3712 7.4132 -1.3698 38 1 11.5274 2.9745 1.2148 39 1 9.9874 1.0632 1.1733 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000531924610.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:36:31 Heat of formation + Delta-G solvation = -78.361996 kcal Electronic energy + Delta-G solvation = -20993.110246 eV Core-core repulsion = 17706.667962 eV Total energy + Delta-G solvation = -3286.442284 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.30986 -39.80540 -38.86493 -36.24919 -35.62194 -35.32154 -32.49274 -30.87337 -28.75390 -28.13708 -27.87606 -26.31509 -23.89001 -23.49793 -21.69922 -20.83383 -19.43260 -18.53290 -17.50993 -17.26314 -16.92536 -16.84612 -16.37483 -16.11624 -16.02509 -15.57724 -15.17068 -14.89450 -14.53271 -14.33235 -14.15704 -13.94904 -13.27200 -13.13010 -12.95169 -12.94458 -12.65377 -12.42197 -12.11690 -12.04274 -11.90836 -11.84030 -11.66566 -11.39181 -11.11647 -10.83552 -10.54647 -9.93756 -9.58566 -8.84952 -8.67286 -6.55807 0.75132 0.98694 1.41559 1.52939 1.56918 1.93844 2.14551 2.20945 2.79760 2.93805 3.64122 3.73056 3.92194 4.00664 4.14761 4.34414 4.50670 4.51930 4.53836 4.62366 4.65475 4.73490 4.76579 4.85822 4.89315 4.92301 4.95412 5.06637 5.12273 5.20958 5.34440 5.45589 5.48038 5.67403 5.90070 6.15800 6.31242 6.48838 6.63403 6.78989 6.83246 7.37841 7.84919 8.27009 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.032292 B = 0.003333 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.886327 B = 8397.668233 C = 9020.655985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.419 6.419 3 C 0.071 3.929 4 C -0.072 4.072 5 H 0.059 0.941 6 C -0.144 4.144 7 C -0.120 4.120 8 C 0.493 3.507 9 O -0.522 6.522 10 N -0.655 5.655 11 C 0.336 3.664 12 C -0.259 4.259 13 C 0.117 3.883 14 C -0.490 4.490 15 H 0.083 0.917 16 C 0.042 3.958 17 N -0.813 5.813 18 Si 0.986 3.014 19 H -0.259 1.259 20 H -0.267 1.267 21 H -0.260 1.260 22 C -0.299 4.299 23 C 0.113 3.887 24 N -0.579 5.579 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.091 0.909 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.041 0.959 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.125 0.875 34 H 0.124 0.876 35 H 0.423 0.577 36 H 0.118 0.882 37 H 0.293 0.707 38 H 0.114 0.886 39 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.965 -0.238 0.105 15.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.338 6.338 3 C -0.006 4.006 4 C -0.091 4.091 5 H 0.077 0.923 6 C -0.201 4.201 7 C -0.160 4.160 8 C 0.280 3.720 9 O -0.395 6.395 10 N -0.303 5.303 11 C 0.110 3.890 12 C -0.285 4.285 13 C 0.109 3.891 14 C -0.520 4.520 15 H 0.101 0.899 16 C -0.175 4.175 17 N -0.438 5.438 18 Si 0.806 3.194 19 H -0.183 1.183 20 H -0.191 1.191 21 H -0.185 1.185 22 C -0.323 4.323 23 C -0.040 4.040 24 N -0.299 5.299 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.109 0.891 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.060 0.940 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.143 0.857 34 H 0.142 0.858 35 H 0.261 0.739 36 H 0.136 0.864 37 H 0.104 0.896 38 H 0.133 0.867 39 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -16.268 -1.845 -0.107 16.372 hybrid contribution 0.929 1.791 -0.025 2.018 sum -15.339 -0.054 -0.132 15.339 Atomic orbital electron populations 1.22908 0.79518 1.03603 1.00977 1.87859 1.21405 1.28947 1.95629 1.22581 0.91686 0.84501 1.01804 1.20752 0.93838 0.95219 0.99278 0.92283 1.21804 1.00994 1.00771 0.96561 1.21666 0.88027 0.99247 1.07072 1.21625 0.90839 0.83698 0.75793 1.90737 1.75393 1.27054 1.46299 1.43570 1.04831 1.10972 1.70930 1.18448 0.84919 0.90247 0.95361 1.21395 0.93966 0.96676 1.16427 1.17999 0.92093 0.92835 0.86178 1.19839 1.07296 0.97946 1.26954 0.89899 1.26794 0.94640 1.04025 0.92065 1.69830 1.27435 1.32733 1.13783 0.85105 0.79006 0.75905 0.79378 1.18251 1.19131 1.18451 1.22099 0.99869 0.93527 1.16793 1.22205 0.88222 0.98471 0.95132 1.67335 1.14713 1.23836 1.24026 0.93034 0.92946 0.89053 0.91441 0.91314 0.93956 0.92822 0.91901 0.85710 0.85795 0.73875 0.86406 0.89646 0.86744 0.83447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 113.37 1.25 1.61 16 2 O -0.42 -9.17 10.24 -148.98 -1.53 -10.69 16 3 C 0.07 1.28 5.32 71.98 0.38 1.66 16 4 C -0.07 -1.76 2.27 -10.79 -0.02 -1.78 16 5 H 0.06 1.78 7.95 -2.39 -0.02 1.76 16 6 C -0.14 -4.00 8.83 71.98 0.64 -3.36 16 7 C -0.12 -2.66 5.18 29.85 0.15 -2.51 16 8 C 0.49 17.65 7.50 87.66 0.66 18.30 16 9 O -0.52 -23.79 12.26 -3.03 -0.04 -23.83 16 10 N -0.66 -24.83 5.39 -308.67 -1.66 -26.49 16 11 C 0.34 16.45 7.40 132.75 0.98 17.44 16 12 C -0.26 -13.31 8.60 22.99 0.20 -13.11 16 13 C 0.12 6.30 5.55 -21.11 -0.12 6.18 16 14 C -0.49 -25.47 9.10 23.52 0.21 -25.26 16 15 H 0.08 4.15 7.91 -2.91 -0.02 4.13 16 16 C 0.04 2.01 5.14 85.29 0.44 2.45 16 17 N -0.81 -39.89 11.25 21.84 0.25 -39.65 16 18 Si 0.99 35.73 29.60 68.60 2.03 37.76 16 19 H -0.26 -9.30 7.11 99.48 0.71 -8.59 16 20 H -0.27 -9.31 7.11 99.48 0.71 -8.60 16 21 H -0.26 -8.92 7.11 99.48 0.71 -8.21 16 22 C -0.30 -15.10 9.90 22.84 0.23 -14.88 16 23 C 0.11 5.58 11.15 84.50 0.94 6.52 16 24 N -0.58 -30.17 7.89 -193.53 -1.53 -31.70 16 25 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 26 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 27 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.04 1.49 5.95 -2.38 -0.01 1.47 16 31 H 0.05 1.49 7.82 -2.39 -0.02 1.47 16 32 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.12 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.12 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.42 12.55 8.70 -92.71 -0.81 11.74 16 36 H 0.12 5.95 6.52 -2.91 -0.02 5.93 16 37 H 0.29 12.75 8.29 -92.71 -0.77 11.98 16 38 H 0.11 5.30 8.06 -2.91 -0.02 5.28 16 39 H 0.15 6.29 8.06 -2.91 -0.02 6.27 16 Total: -1.00 -70.87 329.30 3.71 -67.16 By element: Atomic # 1 Polarization: 33.91 SS G_CDS: 0.25 Total: 34.16 kcal Atomic # 6 Polarization: -12.67 SS G_CDS: 5.94 Total: -6.73 kcal Atomic # 7 Polarization: -94.89 SS G_CDS: -2.95 Total: -97.83 kcal Atomic # 8 Polarization: -32.96 SS G_CDS: -1.56 Total: -34.52 kcal Atomic # 14 Polarization: 35.73 SS G_CDS: 2.03 Total: 37.76 kcal Total: -70.87 3.71 -67.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531924610.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.198 kcal (2) G-P(sol) polarization free energy of solvation -70.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds