Wall clock time and date at job start Tue Mar 31 2020 00:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42903 * 113.99828 * 2 1 4 4 H 1.08997 * 109.47325 * 329.99763 * 3 2 1 5 5 C 1.53003 * 109.47052 * 90.00151 * 3 2 1 6 6 C 1.53008 * 109.46773 * 209.99880 * 3 2 1 7 7 C 1.52991 * 109.47141 * 64.99941 * 6 3 2 8 8 C 1.50700 * 109.46992 * 180.02562 * 7 6 3 9 9 O 1.21272 * 120.00158 * 359.97438 * 8 7 6 10 10 N 1.34780 * 119.99747 * 180.02562 * 8 7 6 11 11 C 1.39470 * 119.99700 * 175.11946 * 10 8 7 12 12 C 1.38594 * 119.58002 * 185.20020 * 11 10 8 13 13 C 1.40817 * 118.79681 * 180.02562 * 12 11 10 14 14 C 1.41540 * 120.99403 * 179.97438 * 13 12 11 15 15 H 1.08000 * 119.99685 * 149.42592 * 14 13 12 16 16 C 1.40032 * 120.00346 * 329.42758 * 14 13 12 17 17 N 1.30734 * 120.00249 * 167.74620 * 16 14 13 18 18 Si 1.86800 * 119.99682 * 347.74383 * 16 14 13 19 19 H 1.48500 * 109.47313 * 92.42866 * 18 16 14 20 20 H 1.48504 * 109.47006 * 212.42701 * 18 16 14 21 21 H 1.48496 * 109.47397 * 332.42691 * 18 16 14 22 22 C 1.41172 * 118.00520 * 0.02562 * 13 12 11 23 23 C 1.37582 * 119.01854 * 359.97438 * 22 13 12 24 24 N 1.32085 * 121.11009 * 359.72392 * 23 22 13 25 25 H 1.09001 * 109.47528 * 300.00669 * 1 2 3 26 26 H 1.09007 * 109.47194 * 60.00119 * 1 2 3 27 27 H 1.08994 * 109.47332 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46743 * 299.99559 * 5 3 2 29 29 H 1.08999 * 109.46634 * 179.97438 * 5 3 2 30 30 H 1.08997 * 109.47373 * 59.99641 * 5 3 2 31 31 H 1.08997 * 109.46861 * 185.00507 * 6 3 2 32 32 H 1.09000 * 109.46957 * 304.99640 * 6 3 2 33 33 H 1.08997 * 109.47705 * 300.00049 * 7 6 3 34 34 H 1.09006 * 109.47072 * 60.00244 * 7 6 3 35 35 H 0.96997 * 120.00611 * 355.11196 * 10 8 7 36 36 H 1.08002 * 120.60308 * 0.02605 * 12 11 10 37 37 H 0.97002 * 120.00349 * 179.97438 * 17 16 14 38 38 H 1.08001 * 120.48700 * 179.97438 * 22 13 12 39 39 H 1.07999 * 119.45008 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 -0.5138 5 6 2.2176 1.7714 1.4425 6 6 3.3589 1.2632 -0.7213 7 6 3.1383 0.9184 -2.1954 8 6 4.4668 0.8761 -2.9056 9 8 5.4892 1.1003 -2.2932 10 7 4.5185 0.5902 -4.2217 11 6 5.7350 0.6507 -4.9012 12 6 5.7621 0.4614 -6.2739 13 6 6.9994 0.5255 -6.9431 14 6 7.0810 0.3386 -8.3438 15 1 7.8499 0.8413 -8.9117 16 6 6.1648 -0.4979 -8.9931 17 7 6.0817 -0.4884 -10.2978 18 14 5.0615 -1.6275 -7.9951 19 1 3.7761 -0.9402 -7.7116 20 1 4.7991 -2.8700 -8.7651 21 1 5.7322 -1.9706 -6.7154 22 6 8.1561 0.7805 -6.1750 23 6 8.0298 0.9552 -4.8162 24 7 6.8493 0.8933 -4.2269 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.2568 1.8015 1.9563 29 1 2.6614 2.7670 1.4425 30 1 2.8828 1.0775 1.9564 31 1 3.8427 2.2369 -0.6443 32 1 3.9931 0.5052 -0.2617 33 1 2.6545 -0.0553 -2.2724 34 1 2.5042 1.6765 -2.6550 35 1 3.7098 0.3423 -4.6964 36 1 4.8508 0.2683 -6.8204 37 1 5.4473 -1.0681 -10.7477 38 1 9.1258 0.8376 -6.6471 39 1 8.9101 1.1511 -4.2219 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000541066334.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:34:46 Heat of formation + Delta-G solvation = -56.802766 kcal Electronic energy + Delta-G solvation = -21050.380017 eV Core-core repulsion = 17764.872611 eV Total energy + Delta-G solvation = -3285.507405 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.86773 -38.69238 -37.91567 -34.46317 -33.76655 -33.73350 -31.33023 -30.54589 -28.77458 -26.94505 -26.02268 -24.71672 -22.38822 -21.71009 -20.89807 -19.68445 -17.74500 -17.21052 -16.98743 -16.08714 -15.52405 -15.43675 -15.16756 -15.10947 -14.53378 -14.03509 -13.87283 -13.49012 -13.32483 -13.08273 -12.94123 -12.80120 -12.38214 -12.37459 -11.70852 -11.61626 -11.48577 -11.15208 -10.98771 -10.85024 -10.75578 -10.67074 -10.04303 -9.87513 -9.82202 -9.55316 -9.32085 -8.23446 -7.87395 -7.25609 -7.04841 -4.74518 2.28674 2.61817 2.98346 3.08588 3.22682 3.33981 3.45560 3.57575 3.87822 4.56574 4.59125 4.70785 4.86828 5.05455 5.07112 5.12229 5.19879 5.34624 5.39003 5.39780 5.48134 5.55763 5.70509 5.80698 5.93762 5.96643 6.20519 6.30471 6.37649 6.39974 6.55399 6.95328 6.99563 7.11419 7.24876 7.57698 7.74244 8.03169 8.20609 8.41413 8.64874 8.70858 9.44155 9.96799 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.024946 B = 0.003921 C = 0.003468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.153086 B = 7139.073519 C = 8071.170316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.384 6.384 3 C 0.083 3.917 4 H 0.061 0.939 5 C -0.174 4.174 6 C -0.100 4.100 7 C -0.139 4.139 8 C 0.498 3.502 9 O -0.478 6.478 10 N -0.666 5.666 11 C 0.368 3.632 12 C -0.320 4.320 13 C 0.128 3.872 14 C -0.438 4.438 15 H 0.095 0.905 16 C 0.084 3.916 17 N -0.805 5.805 18 Si 0.918 3.082 19 H -0.271 1.271 20 H -0.291 1.291 21 H -0.245 1.245 22 C -0.271 4.271 23 C 0.127 3.873 24 N -0.553 5.553 25 H 0.038 0.962 26 H 0.041 0.959 27 H 0.084 0.916 28 H 0.054 0.946 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.096 0.904 34 H 0.088 0.912 35 H 0.407 0.593 36 H 0.108 0.892 37 H 0.287 0.713 38 H 0.110 0.890 39 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.218 1.392 14.501 19.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.303 6.303 3 C 0.026 3.974 4 H 0.079 0.921 5 C -0.231 4.231 6 C -0.138 4.138 7 C -0.179 4.179 8 C 0.284 3.716 9 O -0.348 6.348 10 N -0.312 5.312 11 C 0.141 3.859 12 C -0.345 4.345 13 C 0.120 3.880 14 C -0.469 4.469 15 H 0.113 0.887 16 C -0.135 4.135 17 N -0.429 5.429 18 Si 0.745 3.255 19 H -0.197 1.197 20 H -0.219 1.219 21 H -0.168 1.168 22 C -0.294 4.294 23 C -0.025 4.025 24 N -0.273 5.273 25 H 0.057 0.943 26 H 0.059 0.941 27 H 0.102 0.898 28 H 0.073 0.927 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.103 0.897 32 H 0.099 0.901 33 H 0.115 0.885 34 H 0.106 0.894 35 H 0.242 0.758 36 H 0.126 0.874 37 H 0.098 0.902 38 H 0.128 0.872 39 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -11.504 1.483 15.667 19.493 hybrid contribution -1.224 -0.541 -1.118 1.744 sum -12.728 0.941 14.548 19.353 Atomic orbital electron populations 1.22770 0.81480 1.02626 0.99773 1.87959 1.19274 1.27968 1.95062 1.22228 0.95018 0.84503 0.95669 0.92131 1.22263 1.02141 1.01965 0.96778 1.21451 0.95367 1.03938 0.93010 1.21665 0.95537 1.04337 0.96375 1.20776 0.91513 0.77541 0.81812 1.90778 1.35520 1.43972 1.64485 1.43611 1.09257 1.68376 1.09978 1.18052 0.85496 0.94684 0.87704 1.21255 0.98701 1.21970 0.92591 1.17709 0.89940 0.86966 0.93435 1.19502 1.12948 1.24005 0.90412 0.88666 1.26176 0.95491 0.96803 0.95073 1.69607 1.31034 1.32650 1.09647 0.86231 0.79914 0.78416 0.80964 1.19727 1.21871 1.16813 1.21926 0.98305 1.14778 0.94436 1.21924 0.93616 0.94800 0.92131 1.67344 0.97115 1.24111 1.38738 0.94307 0.94058 0.89783 0.92677 0.91408 0.91573 0.89719 0.90101 0.88542 0.89388 0.75810 0.87441 0.90214 0.87155 0.85236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.82 101.05 1.09 1.32 16 2 O -0.38 -4.08 9.88 -35.23 -0.35 -4.43 16 3 C 0.08 0.80 2.72 -26.73 -0.07 0.72 16 4 H 0.06 0.49 7.79 -51.93 -0.40 0.09 16 5 C -0.17 -1.46 9.53 37.16 0.35 -1.11 16 6 C -0.10 -1.17 4.21 -26.73 -0.11 -1.28 16 7 C -0.14 -1.69 5.60 -27.89 -0.16 -1.84 16 8 C 0.50 8.81 7.79 -10.98 -0.09 8.72 16 9 O -0.48 -10.38 14.24 5.56 0.08 -10.30 16 10 N -0.67 -12.39 5.39 -11.49 -0.06 -12.46 16 11 C 0.37 8.52 7.42 -154.70 -1.15 7.37 16 12 C -0.32 -7.65 6.94 -38.48 -0.27 -7.91 16 13 C 0.13 3.24 5.16 -106.55 -0.55 2.69 16 14 C -0.44 -11.60 9.67 -37.65 -0.36 -11.96 16 15 H 0.10 2.62 8.06 -52.49 -0.42 2.20 16 16 C 0.08 2.15 5.48 -17.35 -0.10 2.06 16 17 N -0.80 -20.83 13.92 55.55 0.77 -20.06 16 18 Si 0.92 20.23 24.42 -169.99 -4.15 16.08 16 19 H -0.27 -5.58 6.67 56.52 0.38 -5.20 16 20 H -0.29 -6.20 7.11 56.52 0.40 -5.80 16 21 H -0.24 -5.68 6.65 56.52 0.38 -5.31 16 22 C -0.27 -6.36 9.90 -38.71 -0.38 -6.75 16 23 C 0.13 2.91 11.15 -17.68 -0.20 2.71 16 24 N -0.55 -13.52 7.85 -12.52 -0.10 -13.62 16 25 H 0.04 0.25 7.87 -51.93 -0.41 -0.16 16 26 H 0.04 0.27 8.09 -51.92 -0.42 -0.15 16 27 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.05 0.40 7.87 -51.93 -0.41 0.00 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.08 1.01 8.10 -51.93 -0.42 0.59 16 32 H 0.08 1.09 8.10 -51.93 -0.42 0.67 16 33 H 0.10 1.08 7.82 -51.93 -0.41 0.67 16 34 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.41 6.09 8.70 -40.82 -0.36 5.74 16 36 H 0.11 2.46 4.43 -52.49 -0.23 2.22 16 37 H 0.29 6.70 8.29 -40.82 -0.34 6.37 16 38 H 0.11 2.38 8.06 -52.49 -0.42 1.96 16 39 H 0.13 2.54 8.06 -52.49 -0.42 2.12 16 LS Contribution 326.32 15.07 4.92 4.92 Total: -1.00 -31.80 326.32 -6.49 -38.30 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -5.62 Total: 6.84 kcal Atomic # 6 Polarization: -3.29 SS G_CDS: -1.98 Total: -5.27 kcal Atomic # 7 Polarization: -46.74 SS G_CDS: 0.61 Total: -46.13 kcal Atomic # 8 Polarization: -14.46 SS G_CDS: -0.27 Total: -14.73 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -4.15 Total: 16.08 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.80 -6.49 -38.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541066334.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.504 kcal (2) G-P(sol) polarization free energy of solvation -31.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds