Wall clock time and date at job start Tue Mar 31 2020 00:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42903 * 113.99828 * 2 1 4 4 H 1.08997 * 109.47325 * 329.99763 * 3 2 1 5 5 C 1.53003 * 109.47052 * 90.00151 * 3 2 1 6 6 C 1.53008 * 109.46773 * 209.99880 * 3 2 1 7 7 C 1.52991 * 109.47141 * 64.99941 * 6 3 2 8 8 C 1.50700 * 109.46992 * 180.02562 * 7 6 3 9 9 O 1.21272 * 120.00158 * 359.97438 * 8 7 6 10 10 N 1.34780 * 119.99747 * 180.02562 * 8 7 6 11 11 C 1.39470 * 119.99700 * 175.11946 * 10 8 7 12 12 C 1.38594 * 119.58002 * 185.20020 * 11 10 8 13 13 C 1.40817 * 118.79681 * 180.02562 * 12 11 10 14 14 C 1.41540 * 120.99403 * 179.97438 * 13 12 11 15 15 H 1.08000 * 119.99685 * 149.42592 * 14 13 12 16 16 C 1.40032 * 120.00346 * 329.42758 * 14 13 12 17 17 N 1.30734 * 120.00249 * 167.74620 * 16 14 13 18 18 Si 1.86800 * 119.99682 * 347.74383 * 16 14 13 19 19 H 1.48500 * 109.47313 * 92.42866 * 18 16 14 20 20 H 1.48504 * 109.47006 * 212.42701 * 18 16 14 21 21 H 1.48496 * 109.47397 * 332.42691 * 18 16 14 22 22 C 1.41172 * 118.00520 * 0.02562 * 13 12 11 23 23 C 1.37582 * 119.01854 * 359.97438 * 22 13 12 24 24 N 1.32085 * 121.11009 * 359.72392 * 23 22 13 25 25 H 1.09001 * 109.47528 * 300.00669 * 1 2 3 26 26 H 1.09007 * 109.47194 * 60.00119 * 1 2 3 27 27 H 1.08994 * 109.47332 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46743 * 299.99559 * 5 3 2 29 29 H 1.08999 * 109.46634 * 179.97438 * 5 3 2 30 30 H 1.08997 * 109.47373 * 59.99641 * 5 3 2 31 31 H 1.08997 * 109.46861 * 185.00507 * 6 3 2 32 32 H 1.09000 * 109.46957 * 304.99640 * 6 3 2 33 33 H 1.08997 * 109.47705 * 300.00049 * 7 6 3 34 34 H 1.09006 * 109.47072 * 60.00244 * 7 6 3 35 35 H 0.96997 * 120.00611 * 355.11196 * 10 8 7 36 36 H 1.08002 * 120.60308 * 0.02605 * 12 11 10 37 37 H 0.97002 * 120.00349 * 179.97438 * 17 16 14 38 38 H 1.08001 * 120.48700 * 179.97438 * 22 13 12 39 39 H 1.07999 * 119.45008 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 -0.5138 5 6 2.2176 1.7714 1.4425 6 6 3.3589 1.2632 -0.7213 7 6 3.1383 0.9184 -2.1954 8 6 4.4668 0.8761 -2.9056 9 8 5.4892 1.1003 -2.2932 10 7 4.5185 0.5902 -4.2217 11 6 5.7350 0.6507 -4.9012 12 6 5.7621 0.4614 -6.2739 13 6 6.9994 0.5255 -6.9431 14 6 7.0810 0.3386 -8.3438 15 1 7.8499 0.8413 -8.9117 16 6 6.1648 -0.4979 -8.9931 17 7 6.0817 -0.4884 -10.2978 18 14 5.0615 -1.6275 -7.9951 19 1 3.7761 -0.9402 -7.7116 20 1 4.7991 -2.8700 -8.7651 21 1 5.7322 -1.9706 -6.7154 22 6 8.1561 0.7805 -6.1750 23 6 8.0298 0.9552 -4.8162 24 7 6.8493 0.8933 -4.2269 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.2568 1.8015 1.9563 29 1 2.6614 2.7670 1.4425 30 1 2.8828 1.0775 1.9564 31 1 3.8427 2.2369 -0.6443 32 1 3.9931 0.5052 -0.2617 33 1 2.6545 -0.0553 -2.2724 34 1 2.5042 1.6765 -2.6550 35 1 3.7098 0.3423 -4.6964 36 1 4.8508 0.2683 -6.8204 37 1 5.4473 -1.0681 -10.7477 38 1 9.1258 0.8376 -6.6471 39 1 8.9101 1.1511 -4.2219 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000541066334.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:34:46 Heat of formation + Delta-G solvation = -78.027446 kcal Electronic energy + Delta-G solvation = -21051.300388 eV Core-core repulsion = 17764.872611 eV Total energy + Delta-G solvation = -3286.427777 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.41799 -39.91105 -39.13118 -36.16983 -35.53614 -34.66014 -33.22870 -31.59790 -30.29401 -27.94027 -27.52033 -25.78252 -24.21578 -23.07133 -21.92100 -21.23243 -19.55799 -18.61241 -17.82845 -17.62433 -17.28202 -16.53864 -16.44832 -16.05949 -15.94249 -15.70440 -15.22831 -14.87322 -14.76810 -14.67606 -14.16974 -13.88163 -13.44600 -13.34613 -13.18123 -12.77659 -12.67636 -12.63187 -12.40281 -12.21186 -12.03845 -11.83722 -11.53014 -11.50940 -11.28976 -10.96765 -10.50839 -10.15142 -9.67336 -9.00783 -8.95686 -6.74443 0.52161 0.74779 1.22147 1.37530 1.47010 1.83038 2.06313 2.08657 2.67474 2.91517 3.49614 3.56018 3.81711 4.00841 4.14546 4.23345 4.37440 4.44585 4.53766 4.56123 4.58229 4.64783 4.65859 4.73755 4.77504 4.82075 4.92678 5.00426 5.06616 5.11426 5.24313 5.28165 5.35119 5.51943 5.69363 6.02128 6.19468 6.36103 6.46999 6.51788 6.67607 7.23712 7.67940 8.10602 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.024946 B = 0.003921 C = 0.003468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.153086 B = 7139.073519 C = 8071.170316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.408 6.408 3 C 0.087 3.913 4 H 0.082 0.918 5 C -0.173 4.173 6 C -0.098 4.098 7 C -0.123 4.123 8 C 0.495 3.505 9 O -0.522 6.522 10 N -0.659 5.659 11 C 0.364 3.636 12 C -0.326 4.326 13 C 0.113 3.887 14 C -0.469 4.469 15 H 0.066 0.934 16 C 0.051 3.949 17 N -0.838 5.838 18 Si 0.968 3.032 19 H -0.241 1.241 20 H -0.277 1.277 21 H -0.264 1.264 22 C -0.283 4.283 23 C 0.128 3.872 24 N -0.572 5.572 25 H 0.048 0.952 26 H 0.053 0.947 27 H 0.090 0.910 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.052 0.948 31 H 0.079 0.921 32 H 0.055 0.945 33 H 0.113 0.887 34 H 0.122 0.878 35 H 0.425 0.575 36 H 0.119 0.881 37 H 0.298 0.702 38 H 0.121 0.879 39 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.883 1.253 15.970 21.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.328 6.328 3 C 0.030 3.970 4 H 0.100 0.900 5 C -0.231 4.231 6 C -0.136 4.136 7 C -0.163 4.163 8 C 0.283 3.717 9 O -0.395 6.395 10 N -0.307 5.307 11 C 0.135 3.865 12 C -0.351 4.351 13 C 0.104 3.896 14 C -0.500 4.500 15 H 0.084 0.916 16 C -0.166 4.166 17 N -0.463 5.463 18 Si 0.792 3.208 19 H -0.166 1.166 20 H -0.204 1.204 21 H -0.189 1.189 22 C -0.306 4.306 23 C -0.024 4.024 24 N -0.292 5.292 25 H 0.067 0.933 26 H 0.072 0.928 27 H 0.108 0.892 28 H 0.086 0.914 29 H 0.093 0.907 30 H 0.071 0.929 31 H 0.098 0.902 32 H 0.074 0.926 33 H 0.131 0.869 34 H 0.140 0.860 35 H 0.263 0.737 36 H 0.136 0.864 37 H 0.109 0.891 38 H 0.139 0.861 39 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -14.219 1.349 17.119 22.295 hybrid contribution -0.337 -0.451 -1.493 1.596 sum -14.556 0.898 15.626 21.374 Atomic orbital electron populations 1.22950 0.79886 1.03507 1.00885 1.87926 1.21088 1.28523 1.95234 1.22191 0.93973 0.84766 0.96072 0.89967 1.22257 1.02621 1.01964 0.96234 1.21420 0.96513 1.02789 0.92917 1.21681 0.92407 1.06368 0.95851 1.21802 0.93060 0.75716 0.81137 1.90758 1.37686 1.45768 1.65254 1.43702 1.08437 1.68046 1.10541 1.18332 0.86740 0.93567 0.87875 1.21349 0.98562 1.22040 0.93134 1.17909 0.91295 0.87168 0.93192 1.19487 1.13559 1.25791 0.91168 0.91597 1.26845 0.96408 0.97457 0.95887 1.69622 1.32219 1.33778 1.10722 0.85462 0.79295 0.77354 0.78695 1.16612 1.20397 1.18858 1.22124 0.98530 1.15041 0.94932 1.22398 0.94372 0.93551 0.92117 1.67486 0.97917 1.24420 1.39379 0.93299 0.92808 0.89152 0.91377 0.90659 0.92907 0.90230 0.92615 0.86888 0.86031 0.73692 0.86352 0.89084 0.86099 0.82271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 10.82 113.37 1.23 1.51 16 2 O -0.41 -7.60 9.88 -148.98 -1.47 -9.07 16 3 C 0.09 1.43 2.72 30.60 0.08 1.51 16 4 H 0.08 1.00 7.79 -2.39 -0.02 0.98 16 5 C -0.17 -2.55 9.53 71.98 0.69 -1.86 16 6 C -0.10 -2.12 4.21 30.59 0.13 -1.99 16 7 C -0.12 -2.61 5.60 29.85 0.17 -2.44 16 8 C 0.49 16.51 7.79 87.66 0.68 17.19 16 9 O -0.52 -22.27 14.24 -3.00 -0.04 -22.31 16 10 N -0.66 -23.03 5.39 -308.66 -1.66 -24.69 16 11 C 0.36 16.36 7.42 132.75 0.98 17.34 16 12 C -0.33 -15.26 6.94 22.99 0.16 -15.10 16 13 C 0.11 5.75 5.16 -21.11 -0.11 5.64 16 14 C -0.47 -25.55 9.67 23.52 0.23 -25.32 16 15 H 0.07 3.84 8.06 -2.91 -0.02 3.81 16 16 C 0.05 2.61 5.48 85.29 0.47 3.07 16 17 N -0.84 -43.76 13.92 21.84 0.30 -43.46 16 18 Si 0.97 40.56 24.42 68.60 1.68 42.24 16 19 H -0.24 -8.91 6.67 99.48 0.66 -8.25 16 20 H -0.28 -10.92 7.11 99.48 0.71 -10.21 16 21 H -0.26 -11.85 6.65 99.48 0.66 -11.19 16 22 C -0.28 -13.35 9.90 22.84 0.23 -13.12 16 23 C 0.13 5.74 11.15 84.50 0.94 6.68 16 24 N -0.57 -27.44 7.85 -193.53 -1.52 -28.96 16 25 H 0.05 0.47 7.87 -2.39 -0.02 0.45 16 26 H 0.05 0.50 8.09 -2.38 -0.02 0.48 16 27 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.07 0.82 7.87 -2.39 -0.02 0.80 16 29 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.08 1.78 8.10 -2.39 -0.02 1.76 16 32 H 0.05 1.47 8.10 -2.39 -0.02 1.46 16 33 H 0.11 2.11 7.82 -2.39 -0.02 2.09 16 34 H 0.12 1.83 8.14 -2.38 -0.02 1.81 16 35 H 0.42 11.34 8.70 -92.71 -0.81 10.53 16 36 H 0.12 5.18 4.43 -2.91 -0.01 5.17 16 37 H 0.30 13.86 8.29 -92.71 -0.77 13.09 16 38 H 0.12 5.29 8.06 -2.91 -0.02 5.27 16 39 H 0.16 6.02 8.06 -2.91 -0.02 6.00 16 Total: -1.00 -69.68 326.32 3.32 -66.37 By element: Atomic # 1 Polarization: 26.63 SS G_CDS: 0.16 Total: 26.79 kcal Atomic # 6 Polarization: -12.78 SS G_CDS: 5.87 Total: -6.90 kcal Atomic # 7 Polarization: -94.23 SS G_CDS: -2.88 Total: -97.11 kcal Atomic # 8 Polarization: -29.86 SS G_CDS: -1.52 Total: -31.38 kcal Atomic # 14 Polarization: 40.56 SS G_CDS: 1.68 Total: 42.24 kcal Total: -69.68 3.32 -66.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541066334.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.662 kcal (2) G-P(sol) polarization free energy of solvation -69.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds