Wall clock time and date at job start Tue Mar 31 2020 00:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34680 * 117.00459 * 2 1 4 4 O 1.21434 * 119.99315 * 0.02562 * 3 2 1 5 5 C 1.48062 * 120.00476 * 179.97438 * 3 2 1 6 6 C 1.39345 * 119.72950 * 180.02562 * 5 3 2 7 7 C 1.38588 * 119.05841 * 179.97438 * 6 5 3 8 8 C 1.38618 * 118.48929 * 359.73492 * 7 6 5 9 9 C 1.38584 * 119.35753 * 0.52898 * 8 7 6 10 10 C 1.50708 * 119.54582 * 179.73107 * 9 8 7 11 11 N 1.46902 * 109.46760 * 94.72796 * 10 9 8 12 12 C 1.46898 * 111.00283 * 293.95026 * 11 10 9 13 13 C 1.46906 * 110.99573 * 169.99885 * 11 10 9 14 14 H 1.09000 * 109.47202 * 60.00133 * 13 11 10 15 15 C 1.52998 * 109.46958 * 299.99941 * 13 11 10 16 16 C 1.50699 * 109.46990 * 180.02562 * 13 11 10 17 17 H 1.08005 * 119.99734 * 0.02562 * 16 13 11 18 18 C 1.37876 * 120.00116 * 180.02562 * 16 13 11 19 19 N 1.31516 * 119.99947 * 359.97438 * 18 16 13 20 20 Si 1.86795 * 120.00011 * 179.97438 * 18 16 13 21 21 H 1.48504 * 109.47244 * 60.00135 * 20 18 16 22 22 H 1.48506 * 109.47128 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47486 * 299.99779 * 20 18 16 24 24 N 1.31500 * 120.90725 * 359.45413 * 9 8 7 25 25 H 1.08997 * 109.47271 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47159 * 300.00280 * 1 2 3 27 27 H 1.08996 * 109.46870 * 60.00059 * 1 2 3 28 28 H 1.08003 * 120.47307 * 359.95504 * 6 5 3 29 29 H 1.08004 * 120.75489 * 180.02562 * 7 6 5 30 30 H 1.08004 * 120.32538 * 180.25993 * 8 7 6 31 31 H 1.08993 * 109.46930 * 334.73045 * 10 9 8 32 32 H 1.09000 * 109.47035 * 214.72384 * 10 9 8 33 33 H 1.08997 * 109.47334 * 296.05250 * 12 11 10 34 34 H 1.09000 * 109.46674 * 56.05127 * 12 11 10 35 35 H 1.08995 * 109.47296 * 176.04950 * 12 11 10 36 36 H 1.08997 * 109.47598 * 60.00269 * 15 13 11 37 37 H 1.09002 * 109.46781 * 180.02562 * 15 13 11 38 38 H 1.09000 * 109.47321 * 300.00119 * 15 13 11 39 39 H 0.96998 * 120.00296 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2000 0.0000 4 8 1.4021 2.2184 0.0005 5 6 3.5421 1.2775 0.0006 6 6 4.1689 2.5220 0.0011 7 6 5.5536 2.5783 0.0022 8 6 6.2638 1.3879 0.0083 9 6 5.5746 0.1856 0.0020 10 6 6.3425 -1.1112 0.0025 11 7 6.4870 -1.5941 1.3823 12 6 7.3316 -0.6876 2.1716 13 6 7.0176 -2.9637 1.4078 14 1 7.9953 -2.9837 0.9263 15 6 6.0616 -3.8950 0.6598 16 6 7.1513 -3.4241 2.8365 17 1 6.8698 -2.7653 3.6447 18 6 7.6329 -4.6863 3.1119 19 7 7.9752 -5.4887 2.1277 20 14 7.7992 -5.2567 4.8829 21 1 6.4671 -5.2300 5.5387 22 1 8.3355 -6.6413 4.9087 23 1 8.7267 -4.3526 5.6091 24 7 4.2598 0.1607 0.0011 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 3.5839 3.4299 0.0004 29 1 6.0677 3.5281 0.0030 30 1 7.3438 1.3972 0.0135 31 1 7.3293 -0.9492 -0.4310 32 1 5.8036 -1.8527 -0.5873 33 1 8.3404 -0.6793 1.7589 34 1 6.9161 0.3195 2.1357 35 1 7.3649 -1.0303 3.2057 36 1 5.9644 -3.5622 -0.3736 37 1 6.4551 -4.9113 0.6791 38 1 5.0839 -3.8750 1.1413 39 1 8.3136 -6.3769 2.3214 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000562493154.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:43:07 Heat of formation + Delta-G solvation = -32.319329 kcal Electronic energy + Delta-G solvation = -21482.175382 eV Core-core repulsion = 18197.729658 eV Total energy + Delta-G solvation = -3284.445724 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.85210 -39.70772 -36.98929 -36.46759 -33.17455 -32.69859 -31.63263 -29.09888 -27.99545 -27.32036 -24.87739 -24.75094 -23.66735 -21.90184 -21.01052 -19.41126 -18.23735 -17.11841 -16.44435 -16.28726 -16.23617 -15.91627 -15.24319 -14.49109 -14.35711 -13.96955 -13.68466 -13.62409 -13.33527 -12.88609 -12.58043 -12.42352 -12.21692 -11.85505 -11.84340 -11.16434 -10.98594 -10.90084 -10.83868 -10.72398 -10.60672 -10.13186 -10.10563 -9.95157 -9.85641 -9.40155 -9.12390 -8.85277 -8.40488 -7.21605 -6.00462 -4.04862 0.48753 1.19945 2.36427 2.55791 3.33005 3.37412 3.40603 3.76849 4.08764 4.42129 4.67133 4.71438 4.92261 4.92656 5.03229 5.10772 5.16744 5.30724 5.33282 5.46155 5.54585 5.77033 5.95321 6.01767 6.08640 6.19275 6.22874 6.34024 6.53038 6.72762 6.88588 7.09883 7.15079 7.50970 7.52469 7.70673 7.83219 7.99229 8.19903 8.31160 8.56973 9.00460 9.59844 11.06290 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.020144 B = 0.004317 C = 0.003896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.640159 B = 6484.077923 C = 7185.713397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.328 6.328 3 C 0.528 3.472 4 O -0.508 6.508 5 C 0.086 3.914 6 C -0.117 4.117 7 C -0.086 4.086 8 C -0.134 4.134 9 C 0.154 3.846 10 C 0.093 3.907 11 N -0.527 5.527 12 C 0.034 3.966 13 C 0.214 3.786 14 H 0.000 1.000 15 C -0.134 4.134 16 C -0.503 4.503 17 H 0.062 0.938 18 C 0.060 3.940 19 N -0.893 5.893 20 Si 0.897 3.103 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.278 1.278 24 N -0.414 5.414 25 H 0.104 0.896 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.146 0.854 29 H 0.144 0.856 30 H 0.141 0.859 31 H 0.043 0.957 32 H 0.098 0.902 33 H 0.014 0.986 34 H 0.040 0.960 35 H 0.077 0.923 36 H 0.009 0.991 37 H 0.085 0.915 38 H 0.037 0.963 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.810 13.912 -6.130 16.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.243 6.243 3 C 0.372 3.628 4 O -0.396 6.396 5 C -0.050 4.050 6 C -0.138 4.138 7 C -0.111 4.111 8 C -0.155 4.155 9 C 0.012 3.988 10 C -0.036 4.036 11 N -0.252 5.252 12 C -0.114 4.114 13 C 0.109 3.891 14 H 0.018 0.982 15 C -0.192 4.192 16 C -0.542 4.542 17 H 0.081 0.919 18 C -0.141 4.141 19 N -0.532 5.532 20 Si 0.725 3.275 21 H -0.202 1.202 22 H -0.214 1.214 23 H -0.204 1.204 24 N -0.125 5.125 25 H 0.123 0.877 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.164 0.836 29 H 0.161 0.839 30 H 0.159 0.841 31 H 0.060 0.940 32 H 0.116 0.884 33 H 0.032 0.968 34 H 0.059 0.941 35 H 0.096 0.904 36 H 0.028 0.972 37 H 0.104 0.896 38 H 0.056 0.944 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.911 13.172 -5.943 16.475 hybrid contribution 1.131 0.543 0.642 1.409 sum -6.781 13.715 -5.301 16.192 Atomic orbital electron populations 1.23341 0.76284 1.04061 1.02317 1.86749 1.23009 1.31530 1.82965 1.20892 0.88021 0.81687 0.72220 1.90817 1.66064 1.36274 1.46458 1.19987 0.90721 0.90280 1.04054 1.21984 0.95389 0.97990 0.98399 1.21532 0.93283 0.99029 0.97282 1.22411 1.02012 0.92912 0.98157 1.21530 0.88849 0.95678 0.92720 1.21094 0.96541 0.91847 0.94075 1.62129 1.51085 1.04472 1.07509 1.22285 0.93780 0.94986 1.00396 1.19277 0.91789 0.81382 0.96646 0.98235 1.21859 0.99368 1.02904 0.95030 1.21091 1.42214 0.99452 0.91430 0.91942 1.24911 0.95426 0.96562 0.97233 1.69880 1.44124 1.08391 1.30830 0.86581 0.78418 0.77586 0.84925 1.20225 1.21363 1.20391 1.67524 1.08048 1.29417 1.07549 0.87722 0.91835 0.91947 0.83646 0.83872 0.84103 0.93951 0.88424 0.96757 0.94139 0.90393 0.97175 0.89646 0.94381 0.92924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.56 101.05 1.07 1.42 16 2 O -0.33 -4.92 10.38 -40.44 -0.42 -5.34 16 3 C 0.53 8.11 7.95 34.76 0.28 8.39 16 4 O -0.51 -7.96 16.11 -19.22 -0.31 -8.27 16 5 C 0.09 1.32 6.75 -83.03 -0.56 0.76 16 6 C -0.12 -1.43 9.63 -39.04 -0.38 -1.81 16 7 C -0.09 -0.91 10.17 -39.31 -0.40 -1.31 16 8 C -0.13 -1.68 8.24 -39.31 -0.32 -2.00 16 9 C 0.15 2.47 5.65 -82.60 -0.47 2.00 16 10 C 0.09 1.68 5.10 -4.97 -0.03 1.65 16 11 N -0.53 -11.27 4.61 -237.73 -1.10 -12.36 16 12 C 0.03 0.65 8.95 60.06 0.54 1.19 16 13 C 0.21 5.34 2.06 -68.86 -0.14 5.20 16 14 H 0.00 0.00 8.14 -51.93 -0.42 -0.42 16 15 C -0.13 -3.27 8.76 37.16 0.33 -2.94 16 16 C -0.50 -13.64 7.93 -34.44 -0.27 -13.92 16 17 H 0.06 1.69 6.40 -52.48 -0.34 1.36 16 18 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16 19 N -0.89 -25.17 11.32 55.43 0.63 -24.54 16 20 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 22 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 N -0.41 -7.18 10.03 -6.07 -0.06 -7.24 16 25 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.15 1.51 7.64 -52.48 -0.40 1.11 16 29 H 0.14 1.00 8.06 -52.48 -0.42 0.57 16 30 H 0.14 1.46 8.06 -52.48 -0.42 1.04 16 31 H 0.04 0.70 8.02 -51.93 -0.42 0.28 16 32 H 0.10 1.85 5.83 -51.93 -0.30 1.55 16 33 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.04 0.67 6.15 -51.93 -0.32 0.35 16 35 H 0.08 1.62 6.24 -51.93 -0.32 1.29 16 36 H 0.01 0.21 6.20 -51.93 -0.32 -0.11 16 37 H 0.08 2.27 6.07 -51.93 -0.32 1.96 16 38 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 326.18 15.07 4.92 4.92 Total: -1.00 -31.18 326.18 -7.07 -38.25 By element: Atomic # 1 Polarization: 3.46 SS G_CDS: -5.25 Total: -1.79 kcal Atomic # 6 Polarization: 0.64 SS G_CDS: -0.45 Total: 0.18 kcal Atomic # 7 Polarization: -43.62 SS G_CDS: -0.53 Total: -44.15 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: -0.73 Total: -13.61 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.18 -7.07 -38.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000562493154.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.932 kcal (2) G-P(sol) polarization free energy of solvation -31.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds