Wall clock time and date at job start Tue Mar 31 2020 00:02:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53007 * 109.46827 * 2 1 4 4 O 1.42901 * 109.47396 * 240.00143 * 2 1 3 5 5 C 1.36010 * 116.99589 * 275.22425 * 4 2 1 6 6 C 1.38034 * 120.01367 * 5.40780 * 5 4 2 7 7 C 1.39810 * 119.87033 * 179.77095 * 6 5 4 8 8 C 1.47522 * 120.05429 * 180.20741 * 7 6 5 9 9 N 1.34777 * 120.00398 * 180.27644 * 8 7 6 10 10 O 1.21603 * 119.99734 * 0.27221 * 8 7 6 11 11 C 1.39754 * 119.89213 * 0.48150 * 7 6 5 12 12 C 1.37710 * 120.01645 * 359.77102 * 11 7 6 13 13 C 1.39030 * 120.13426 * 359.97438 * 12 11 7 14 14 N 1.39301 * 119.94768 * 179.97438 * 13 12 11 15 15 C 1.46499 * 119.99979 * 0.02562 * 14 13 12 16 16 C 1.50698 * 109.47037 * 180.02562 * 15 14 13 17 17 H 1.08002 * 120.00454 * 359.97438 * 16 15 14 18 18 C 1.37885 * 120.00059 * 180.02562 * 16 15 14 19 19 N 1.31517 * 119.99727 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 119.99983 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.46958 * 90.00273 * 20 18 16 22 22 H 1.48504 * 109.46862 * 209.99821 * 20 18 16 23 23 H 1.48499 * 109.47439 * 329.99887 * 20 18 16 24 24 H 1.08998 * 109.47164 * 60.00192 * 1 2 3 25 25 H 1.08997 * 109.46934 * 300.00259 * 1 2 3 26 26 H 1.09004 * 109.46705 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47627 * 119.99564 * 2 1 3 28 28 H 1.08997 * 109.47179 * 59.99768 * 3 2 1 29 29 H 1.09003 * 109.47079 * 180.02562 * 3 2 1 30 30 H 1.09009 * 109.46736 * 300.00094 * 3 2 1 31 31 H 1.08001 * 120.06113 * 359.97438 * 6 5 4 32 32 H 0.97004 * 119.99738 * 359.97438 * 9 8 7 33 33 H 0.96996 * 120.00606 * 180.02562 * 9 8 7 34 34 H 1.07999 * 119.98788 * 179.74913 * 11 7 6 35 35 H 1.08009 * 119.92985 * 179.97438 * 12 11 7 36 36 H 0.97003 * 119.99883 * 180.02562 * 14 13 12 37 37 H 1.08998 * 109.46848 * 299.99960 * 15 14 13 38 38 H 1.08995 * 109.46930 * 60.00048 * 15 14 13 39 39 H 0.96992 * 119.99967 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.1082 -2.0282 -1.0993 6 6 1.6543 -2.6999 0.0179 7 6 1.7560 -4.0929 0.0820 8 6 1.2680 -4.8153 1.2721 9 7 1.3717 -6.1576 1.3352 10 8 0.7723 -4.1996 2.1961 11 6 2.3260 -4.7992 -0.9807 12 6 2.7822 -4.1240 -2.0908 13 6 2.6766 -2.7394 -2.1578 14 7 3.1398 -2.0603 -3.2824 15 6 3.7370 -2.8051 -4.3936 16 6 4.1535 -1.8436 -5.4766 17 1 3.9893 -0.7836 -5.3502 18 6 4.7432 -2.3171 -6.6295 19 7 4.9427 -3.6078 -6.7838 20 14 5.2587 -1.1252 -7.9723 21 1 6.6569 -0.6855 -7.7338 22 1 5.1701 -1.7989 -9.2928 23 1 4.3590 0.0561 -7.9579 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8935 -0.5137 0.8900 28 1 1.6766 1.9564 0.8899 29 1 3.1300 1.4426 -0.0005 30 1 1.6766 1.9564 -0.8901 31 1 1.2184 -2.1508 0.8394 32 1 1.7669 -6.6487 0.5979 33 1 1.0505 -6.6326 2.1175 34 1 2.4091 -5.8749 -0.9310 35 1 3.2228 -4.6713 -2.9111 36 1 3.0669 -1.0941 -3.3298 37 1 4.6106 -3.3509 -4.0371 38 1 3.0070 -3.5090 -4.7931 39 1 5.3571 -3.9410 -7.5950 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000566969508.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:46 Heat of formation + Delta-G solvation = -85.797883 kcal Electronic energy + Delta-G solvation = -21349.699831 eV Core-core repulsion = 18062.935103 eV Total energy + Delta-G solvation = -3286.764728 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.52935 -40.19318 -38.71481 -36.59354 -34.87776 -34.42291 -33.92859 -31.17399 -30.61544 -28.41155 -28.05610 -25.40561 -24.07538 -23.59840 -21.67044 -21.35688 -19.77131 -18.88648 -18.20156 -17.50198 -17.30438 -16.91213 -16.42701 -16.34957 -15.69148 -15.47104 -15.40019 -14.95095 -14.85988 -14.44287 -14.22415 -13.93563 -13.62806 -13.56076 -13.13765 -13.04697 -12.84177 -12.73452 -12.66494 -12.31294 -12.01295 -11.77821 -11.57425 -11.43839 -11.17843 -11.07899 -10.64873 -10.54826 -9.52172 -8.30563 -8.05283 -6.43104 0.08113 0.49279 1.42125 1.42411 1.53671 1.96847 2.25568 2.34763 2.66907 2.82056 2.97974 3.05464 3.84110 3.87498 3.99989 4.06678 4.11141 4.20382 4.30548 4.53010 4.70182 4.75282 4.81629 4.87835 4.97400 5.00425 5.07550 5.23612 5.26249 5.30377 5.31515 5.40896 5.52387 5.76443 5.88586 5.97956 6.29872 6.50603 6.52655 6.75223 7.04871 7.28928 7.38810 8.80843 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.016306 B = 0.004668 C = 0.003695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.758566 B = 5996.899567 C = 7576.597166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.070 3.930 3 C -0.143 4.143 4 O -0.329 6.329 5 C 0.028 3.972 6 C -0.105 4.105 7 C -0.200 4.200 8 C 0.574 3.426 9 N -0.831 5.831 10 O -0.596 6.596 11 C -0.042 4.042 12 C -0.202 4.202 13 C 0.217 3.783 14 N -0.717 5.717 15 C 0.269 3.731 16 C -0.559 4.559 17 H 0.065 0.935 18 C 0.015 3.985 19 N -0.922 5.922 20 Si 0.972 3.028 21 H -0.272 1.272 22 H -0.279 1.279 23 H -0.266 1.266 24 H 0.063 0.937 25 H 0.093 0.907 26 H 0.048 0.952 27 H 0.071 0.929 28 H 0.101 0.899 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.140 0.860 32 H 0.415 0.585 33 H 0.412 0.588 34 H 0.162 0.838 35 H 0.127 0.873 36 H 0.399 0.601 37 H 0.002 0.998 38 H 0.002 0.998 39 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.374 0.128 13.890 15.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.014 3.986 3 C -0.200 4.200 4 O -0.244 6.244 5 C -0.021 4.021 6 C -0.126 4.126 7 C -0.206 4.206 8 C 0.362 3.638 9 N -0.396 5.396 10 O -0.479 6.479 11 C -0.062 4.062 12 C -0.226 4.226 13 C 0.107 3.893 14 N -0.340 5.340 15 C 0.146 3.854 16 C -0.597 4.597 17 H 0.083 0.917 18 C -0.185 4.185 19 N -0.560 5.560 20 Si 0.797 3.203 21 H -0.197 1.197 22 H -0.204 1.204 23 H -0.190 1.190 24 H 0.082 0.918 25 H 0.111 0.889 26 H 0.067 0.933 27 H 0.089 0.911 28 H 0.119 0.881 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.158 0.842 32 H 0.248 0.752 33 H 0.244 0.756 34 H 0.180 0.820 35 H 0.145 0.855 36 H 0.234 0.766 37 H 0.020 0.980 38 H 0.020 0.980 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.433 0.536 13.885 15.312 hybrid contribution 0.351 0.200 -0.847 0.939 sum -6.082 0.736 13.037 14.405 Atomic orbital electron populations 1.22338 0.94488 1.02501 1.03813 1.22640 0.94963 0.94297 0.86654 1.21862 1.01757 0.92415 1.03978 1.86040 1.82721 1.15516 1.40161 1.18241 1.05123 0.83468 0.95224 1.21056 1.00337 0.94419 0.96769 1.19328 1.10981 0.93419 0.96901 1.18129 0.76875 0.83196 0.85604 1.43521 1.64763 1.06236 1.25051 1.90745 1.47846 1.68802 1.40511 1.21133 0.93889 1.00596 0.90539 1.20595 1.09242 0.91198 1.01523 1.17988 0.92593 0.92292 0.86393 1.45137 1.63304 1.09414 1.16168 1.18713 0.91387 0.91982 0.83307 1.21541 1.41431 0.94112 1.02626 0.91679 1.25799 0.95062 0.97101 1.00553 1.70040 1.43308 1.14134 1.28538 0.85335 0.78787 0.78574 0.77645 1.19729 1.20424 1.19036 0.91773 0.88854 0.93270 0.91111 0.88071 0.92283 0.91736 0.84248 0.75247 0.75574 0.82044 0.85476 0.76645 0.97987 0.98010 0.92135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.90 9.17 71.98 0.66 -3.24 16 2 C 0.07 1.77 2.85 30.60 0.09 1.85 16 3 C -0.14 -2.87 9.56 71.98 0.69 -2.19 16 4 O -0.33 -10.95 9.03 -93.67 -0.85 -11.79 16 5 C 0.03 0.98 6.61 22.55 0.15 1.13 16 6 C -0.11 -3.38 7.78 22.60 0.18 -3.20 16 7 C -0.20 -5.88 5.88 -20.08 -0.12 -6.00 16 8 C 0.57 15.63 8.03 86.69 0.70 16.33 16 9 N -0.83 -13.91 8.82 -175.81 -1.55 -15.46 16 10 O -0.60 -20.53 17.17 -4.04 -0.07 -20.60 16 11 C -0.04 -1.15 9.53 22.51 0.21 -0.93 16 12 C -0.20 -7.05 9.28 22.33 0.21 -6.84 16 13 C 0.22 8.46 6.67 38.48 0.26 8.72 16 14 N -0.72 -31.40 5.70 -342.76 -1.95 -33.36 16 15 C 0.27 13.68 4.65 85.63 0.40 14.08 16 16 C -0.56 -30.29 9.28 25.60 0.24 -30.06 16 17 H 0.07 3.41 7.60 -2.91 -0.02 3.39 16 18 C 0.02 0.82 5.46 84.66 0.46 1.29 16 19 N -0.92 -52.33 13.29 21.45 0.28 -52.04 16 20 Si 0.97 42.15 29.54 68.60 2.03 44.18 16 21 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 22 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 23 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 24 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.05 1.24 6.89 -2.38 -0.02 1.23 16 27 H 0.07 1.76 6.32 -2.39 -0.02 1.75 16 28 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 31 H 0.14 4.30 4.99 -2.91 -0.01 4.29 16 32 H 0.42 4.65 6.84 -92.71 -0.63 4.01 16 33 H 0.41 5.38 8.93 -92.71 -0.83 4.55 16 34 H 0.16 2.88 6.39 -2.91 -0.02 2.86 16 35 H 0.13 4.70 6.70 -2.91 -0.02 4.68 16 36 H 0.40 17.20 7.66 -92.71 -0.71 16.49 16 37 H 0.00 0.13 7.94 -2.39 -0.02 0.11 16 38 H 0.00 0.11 7.94 -2.39 -0.02 0.09 16 39 H 0.27 14.34 8.31 -92.71 -0.77 13.57 16 Total: -1.00 -67.42 326.80 0.94 -66.47 By element: Atomic # 1 Polarization: 32.73 SS G_CDS: -1.06 Total: 31.66 kcal Atomic # 6 Polarization: -13.17 SS G_CDS: 4.12 Total: -9.06 kcal Atomic # 7 Polarization: -97.64 SS G_CDS: -3.22 Total: -100.86 kcal Atomic # 8 Polarization: -31.48 SS G_CDS: -0.91 Total: -32.40 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.18 kcal Total: -67.42 0.94 -66.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566969508.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.326 kcal (2) G-P(sol) polarization free energy of solvation -67.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds