Wall clock time and date at job start Tue Mar 31 2020 00:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47783 * 2 1 4 4 C 1.50706 * 109.46794 * 119.99753 * 2 1 3 5 5 O 1.21280 * 120.00091 * 94.50528 * 4 2 1 6 6 N 1.34780 * 119.99846 * 274.50381 * 4 2 1 7 7 C 1.46961 * 120.59377 * 4.80208 * 6 4 2 8 8 C 1.53814 * 108.39533 * 124.75691 * 7 6 4 9 9 N 1.46969 * 108.57430 * 49.64142 * 8 7 6 10 10 C 1.36936 * 120.59334 * 124.67119 * 9 8 7 11 11 H 1.08005 * 120.00020 * 212.04871 * 10 9 8 12 12 C 1.38817 * 120.00241 * 32.04562 * 10 9 8 13 13 N 1.31613 * 119.99908 * 10.25813 * 12 10 9 14 14 Si 1.86797 * 119.99862 * 190.25721 * 12 10 9 15 15 H 1.48499 * 109.47023 * 90.00196 * 14 12 10 16 16 H 1.48503 * 109.47037 * 209.99719 * 14 12 10 17 17 H 1.48491 * 109.47526 * 330.00248 * 14 12 10 18 18 C 1.46964 * 118.81338 * 304.63956 * 9 8 7 19 19 C 1.46963 * 120.59082 * 185.08392 * 6 4 2 20 20 C 1.50704 * 109.47179 * 239.99295 * 2 1 3 21 21 C 1.34513 * 125.79013 * 120.00571 * 20 2 1 22 22 C 1.41381 * 106.84147 * 179.75307 * 21 20 2 23 23 C 1.34517 * 106.83930 * 0.36777 * 22 21 20 24 24 O 1.34299 * 125.78947 * 299.98253 * 20 2 1 25 25 H 1.09010 * 109.46570 * 55.01836 * 1 2 3 26 26 H 1.08992 * 109.47533 * 175.01892 * 1 2 3 27 27 H 1.09003 * 109.46870 * 295.02427 * 1 2 3 28 28 H 1.08993 * 109.61297 * 244.54263 * 7 6 4 29 29 H 1.09006 * 109.61172 * 5.05671 * 7 6 4 30 30 H 1.08993 * 109.74721 * 289.85018 * 8 7 6 31 31 H 1.09004 * 109.53253 * 169.29879 * 8 7 6 32 32 H 0.96994 * 120.00248 * 179.97438 * 13 12 10 33 33 H 1.08996 * 109.61011 * 295.48657 * 18 9 8 34 34 H 1.08999 * 109.75127 * 175.05938 * 18 9 8 35 35 H 1.09001 * 109.61237 * 354.95230 * 19 6 4 36 36 H 1.09006 * 109.60790 * 115.45675 * 19 6 4 37 37 H 1.08001 * 126.57645 * 359.97438 * 21 20 2 38 38 H 1.08002 * 126.57462 * 180.23571 * 22 21 20 39 39 H 1.08000 * 125.78442 * 179.88667 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2306 5 8 2.3122 -1.8893 1.1784 6 7 2.1704 -0.0355 2.3890 7 6 1.7371 1.3647 2.4952 8 6 0.7477 1.4790 3.6674 9 7 1.3402 0.8297 4.8452 10 6 1.4805 1.5153 6.0222 11 1 2.3095 1.2965 6.6791 12 6 0.5574 2.4916 6.3711 13 7 -0.5557 2.6214 5.6811 14 14 0.8952 3.6210 7.8201 15 1 1.6210 4.8277 7.3485 16 1 -0.3910 4.0281 8.4408 17 1 1.7242 2.9054 8.8229 18 6 1.7787 -0.5689 4.7374 19 6 2.7628 -0.6849 3.5668 20 6 2.0324 -0.7106 -1.2304 21 6 2.8090 -0.1723 -2.1877 22 6 3.0431 -1.1870 -3.1440 23 6 2.3887 -2.2823 -2.7180 24 8 1.7809 -1.9888 -1.5569 25 1 -0.3633 0.5892 -0.8421 26 1 -0.3634 -1.0237 -0.0892 27 1 -0.3633 0.4347 0.9312 28 1 2.6017 2.0023 2.6793 29 1 1.2467 1.6671 1.5698 30 1 -0.1883 0.9840 3.4088 31 1 0.5603 2.5306 3.8849 32 1 -1.2009 3.3033 5.9251 33 1 0.9161 -1.2097 4.5550 34 1 2.2713 -0.8727 5.6610 35 1 2.9503 -1.7365 3.3493 36 1 3.6989 -0.1899 3.8254 37 1 3.1849 0.8397 -2.2180 38 1 3.6323 -1.0988 -4.0448 39 1 2.3606 -3.2371 -3.2220 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610397156.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:27:48 Heat of formation + Delta-G solvation = 10.535961 kcal Electronic energy + Delta-G solvation = -22167.163349 eV Core-core repulsion = 18884.575970 eV Total energy + Delta-G solvation = -3282.587379 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.52650 -39.71496 -36.81929 -34.31510 -33.71508 -32.79067 -31.25604 -30.14989 -28.55560 -27.05150 -24.64375 -23.47689 -22.79280 -21.70693 -21.15138 -20.03069 -18.60835 -17.34169 -17.09610 -16.17130 -15.87902 -15.52595 -14.92539 -14.71610 -14.23107 -13.89535 -13.57944 -13.43828 -13.33365 -13.13092 -12.75853 -12.70992 -12.51976 -12.06072 -11.70563 -11.52852 -11.45714 -11.29138 -10.89209 -10.76059 -10.51918 -10.24465 -10.10785 -9.88489 -9.86222 -9.36637 -8.62482 -8.42248 -8.25596 -6.69093 -5.88575 -3.39030 1.78184 2.61265 2.85442 3.13662 3.31561 3.38600 3.39621 3.44810 4.40544 4.53720 4.71829 4.96453 5.01040 5.12766 5.19613 5.28389 5.32290 5.65922 5.71343 5.75325 5.82511 5.85330 5.89180 5.94308 6.06439 6.07859 6.16706 6.25414 6.32209 6.41992 6.51134 6.78106 6.91388 7.18875 7.23297 7.45179 7.68891 7.87370 8.35814 8.51885 9.10177 9.70255 10.29124 11.18785 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.040468 B = 0.004041 C = 0.003890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.734766 B = 6927.702639 C = 7196.145138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.031 4.031 3 H 0.119 0.881 4 C 0.513 3.487 5 O -0.545 6.545 6 N -0.595 5.595 7 C 0.074 3.926 8 C 0.159 3.841 9 N -0.591 5.591 10 C -0.256 4.256 11 H 0.066 0.934 12 C 0.006 3.994 13 N -0.905 5.905 14 Si 0.907 3.093 15 H -0.286 1.286 16 H -0.290 1.290 17 H -0.278 1.278 18 C 0.132 3.868 19 C 0.096 3.904 20 C 0.019 3.981 21 C -0.215 4.215 22 C -0.218 4.218 23 C -0.044 4.044 24 O -0.153 6.153 25 H 0.070 0.930 26 H 0.066 0.934 27 H 0.078 0.922 28 H 0.065 0.935 29 H 0.073 0.927 30 H 0.025 0.975 31 H 0.102 0.898 32 H 0.256 0.744 33 H 0.024 0.976 34 H 0.066 0.934 35 H 0.081 0.919 36 H 0.062 0.938 37 H 0.147 0.853 38 H 0.145 0.855 39 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.223 -3.217 -14.524 15.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.053 4.053 3 H 0.137 0.863 4 C 0.300 3.700 5 O -0.423 6.423 6 N -0.327 5.327 7 C -0.050 4.050 8 C 0.033 3.967 9 N -0.314 5.314 10 C -0.386 4.386 11 H 0.084 0.916 12 C -0.193 4.193 13 N -0.549 5.549 14 Si 0.737 3.263 15 H -0.213 1.213 16 H -0.216 1.216 17 H -0.204 1.204 18 C 0.005 3.995 19 C -0.028 4.028 20 C -0.032 4.032 21 C -0.234 4.234 22 C -0.237 4.237 23 C -0.112 4.112 24 O -0.048 6.048 25 H 0.089 0.911 26 H 0.086 0.914 27 H 0.097 0.903 28 H 0.083 0.917 29 H 0.091 0.909 30 H 0.043 0.957 31 H 0.120 0.880 32 H 0.066 0.934 33 H 0.042 0.958 34 H 0.085 0.915 35 H 0.100 0.900 36 H 0.081 0.919 37 H 0.164 0.836 38 H 0.163 0.837 39 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 4.048 -3.915 -14.284 15.354 hybrid contribution 0.298 0.814 0.519 1.010 sum 4.346 -3.101 -13.764 14.763 Atomic orbital electron populations 1.21808 0.90979 1.03678 1.03708 1.19940 0.98611 0.98901 0.87799 0.86276 1.20263 0.78418 0.87173 0.84126 1.90674 1.51354 1.15453 1.84846 1.48041 1.60417 1.13742 1.10502 1.22906 1.00185 0.80538 1.01371 1.21280 0.91073 1.00905 0.83472 1.43934 1.72222 1.06525 1.08712 1.19213 1.05803 1.16183 0.97376 0.91596 1.25197 0.94686 1.01147 0.98230 1.69931 1.08468 1.35042 1.41461 0.86219 0.77121 0.80763 0.82209 1.21319 1.21627 1.20361 1.21301 0.95137 0.87809 0.95271 1.22214 0.96839 0.97882 0.85892 1.21736 1.01369 0.82703 0.97425 1.21535 1.04267 1.01339 0.96280 1.21747 1.05856 0.93668 1.02476 1.24026 0.99285 1.00730 0.87149 1.84100 1.58620 1.27582 1.34464 0.91052 0.91444 0.90310 0.91698 0.90921 0.95736 0.87996 0.93417 0.95818 0.91535 0.90028 0.91929 0.83564 0.83672 0.78396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 8.87 37.16 0.33 -1.53 16 2 C -0.03 -0.44 2.26 -92.92 -0.21 -0.65 16 3 H 0.12 1.41 6.63 -51.93 -0.34 1.06 16 4 C 0.51 9.19 6.79 -10.98 -0.07 9.12 16 5 O -0.55 -11.51 15.23 -6.87 -0.10 -11.61 16 6 N -0.59 -10.75 2.94 -172.21 -0.51 -11.25 16 7 C 0.07 1.28 6.12 -3.37 -0.02 1.26 16 8 C 0.16 3.50 5.47 -3.36 -0.02 3.48 16 9 N -0.59 -14.19 2.96 -171.76 -0.51 -14.70 16 10 C -0.26 -6.71 9.58 -15.06 -0.14 -6.86 16 11 H 0.07 1.70 7.85 -52.48 -0.41 1.29 16 12 C 0.01 0.17 5.06 -17.43 -0.09 0.08 16 13 N -0.90 -24.90 11.04 55.49 0.61 -24.29 16 14 Si 0.91 20.81 29.57 -169.99 -5.03 15.79 16 15 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 16 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 17 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 18 C 0.13 2.76 6.67 -3.60 -0.02 2.74 16 19 C 0.10 1.78 6.60 -3.60 -0.02 1.75 16 20 C 0.02 0.28 5.46 -35.62 -0.19 0.09 16 21 C -0.21 -2.75 10.78 -39.70 -0.43 -3.17 16 22 C -0.22 -2.53 10.91 -39.70 -0.43 -2.96 16 23 C -0.04 -0.52 12.09 29.42 0.36 -0.17 16 24 O -0.15 -2.39 10.05 -6.71 -0.07 -2.45 16 25 H 0.07 0.75 8.14 -51.92 -0.42 0.33 16 26 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.08 1.06 7.26 -51.93 -0.38 0.68 16 28 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.07 1.02 4.92 -51.93 -0.26 0.77 16 30 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.10 2.47 6.05 -51.93 -0.31 2.16 16 32 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 33 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.07 1.33 7.94 -51.93 -0.41 0.92 16 35 H 0.08 1.51 6.99 -51.93 -0.36 1.14 16 36 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.15 1.54 8.06 -52.49 -0.42 1.11 16 38 H 0.15 1.28 8.06 -52.49 -0.42 0.85 16 39 H 0.20 1.57 8.06 -52.49 -0.42 1.14 16 LS Contribution 318.73 15.07 4.80 4.80 Total: -1.00 -31.63 318.73 -7.19 -38.82 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -5.42 Total: 1.72 kcal Atomic # 6 Polarization: 4.15 SS G_CDS: -0.97 Total: 3.18 kcal Atomic # 7 Polarization: -49.84 SS G_CDS: -0.40 Total: -50.24 kcal Atomic # 8 Polarization: -13.89 SS G_CDS: -0.17 Total: -14.07 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.03 Total: 15.79 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -31.63 -7.19 -38.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610397156.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.356 kcal (2) G-P(sol) polarization free energy of solvation -31.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds