Wall clock time and date at job start Tue Mar 31 2020 00:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08993 * 109.47269 * 2 1 4 4 C 1.50702 * 109.47193 * 239.99923 * 2 1 3 5 5 H 1.07995 * 120.00109 * 240.00033 * 4 2 1 6 6 C 1.37885 * 119.99624 * 59.99866 * 4 2 1 7 7 N 1.31512 * 120.00230 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99797 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.46850 * 270.00139 * 8 6 4 10 10 H 1.48500 * 109.47070 * 29.99759 * 8 6 4 11 11 H 1.48495 * 109.47212 * 150.00287 * 8 6 4 12 12 N 1.46906 * 109.47217 * 120.00389 * 2 1 3 13 13 C 1.46895 * 110.99895 * 176.04775 * 12 2 1 14 14 C 1.46904 * 110.99437 * 299.99555 * 12 2 1 15 15 C 1.50706 * 109.46673 * 170.00052 * 14 12 2 16 16 O 1.21296 * 119.99974 * 0.02562 * 15 14 12 17 17 N 1.34772 * 119.99810 * 180.02562 * 15 14 12 18 18 C 1.40110 * 119.99805 * 174.72994 * 17 15 14 19 19 C 1.38843 * 120.01497 * 326.53983 * 18 17 15 20 20 C 1.38094 * 119.98508 * 179.71973 * 19 18 17 21 21 C 1.38723 * 120.01191 * 0.55828 * 20 19 18 22 22 O 1.35969 * 119.98744 * 179.70102 * 21 20 19 23 23 C 1.38729 * 120.02993 * 359.72080 * 21 20 19 24 24 C 1.38084 * 120.01404 * 0.02562 * 23 21 20 25 25 H 1.08995 * 109.47476 * 59.99997 * 1 2 3 26 26 H 1.09007 * 109.47289 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47339 * 299.99331 * 1 2 3 28 28 H 0.96992 * 119.99992 * 180.02562 * 7 6 4 29 29 H 1.09004 * 109.47656 * 59.99756 * 13 12 2 30 30 H 1.08997 * 109.47146 * 179.97438 * 13 12 2 31 31 H 1.09000 * 109.47356 * 299.99804 * 13 12 2 32 32 H 1.08992 * 109.47516 * 289.99959 * 14 12 2 33 33 H 1.09005 * 109.46627 * 50.00727 * 14 12 2 34 34 H 0.97001 * 120.00315 * 354.72765 * 17 15 14 35 35 H 1.07997 * 120.01060 * 359.97438 * 19 18 17 36 36 H 1.07998 * 119.99655 * 180.28278 * 20 19 18 37 37 H 0.96703 * 113.99655 * 270.02562 * 22 21 20 38 38 H 1.08000 * 119.98936 * 179.97438 * 23 21 20 39 39 H 1.08001 * 120.00697 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9435 0.8302 -2.6034 8 14 2.3212 -1.1203 -4.0080 9 1 3.6296 -0.5458 -4.4124 10 1 2.4858 -2.5662 -3.7120 11 1 1.3430 -0.9492 -5.1121 12 7 2.0197 -0.6926 1.1994 13 6 3.4850 -0.7946 1.1870 14 6 1.5487 -0.0264 2.4211 15 6 1.8580 -0.8912 3.6159 16 8 2.4163 -1.9574 3.4646 17 7 1.5142 -0.4800 4.8525 18 6 1.7010 -1.3299 5.9505 19 6 1.5570 -2.7025 5.7987 20 6 1.7468 -3.5402 6.8801 21 6 2.0699 -3.0096 8.1205 22 8 2.2508 -3.8343 9.1862 23 6 2.2082 -1.6378 8.2741 24 6 2.0238 -0.7995 7.1924 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 0.7088 1.1614 -3.4844 29 1 3.9187 0.2051 1.1591 30 1 3.8209 -1.3110 2.0862 31 1 3.8030 -1.3531 0.3066 32 1 2.0519 0.9345 2.5280 33 1 0.4722 0.1323 2.3563 34 1 1.1376 0.4045 4.9823 35 1 1.3006 -3.1154 4.8343 36 1 1.6394 -4.6082 6.7612 37 1 1.4440 -4.0083 9.6902 38 1 2.4594 -1.2254 9.2402 39 1 2.1311 0.2684 7.3123 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000748802541.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:43:23 Heat of formation + Delta-G solvation = -32.603991 kcal Electronic energy + Delta-G solvation = -21186.880652 eV Core-core repulsion = 17902.422585 eV Total energy + Delta-G solvation = -3284.458068 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.55530 -39.17749 -37.18240 -36.23895 -34.19808 -32.76158 -31.13531 -29.61346 -29.02451 -27.44843 -24.88703 -23.68573 -23.19276 -22.30200 -20.45203 -19.41489 -18.56377 -17.71044 -17.04060 -16.24453 -15.72087 -15.54964 -15.29269 -14.62894 -14.47434 -13.92284 -13.84193 -13.71385 -13.45064 -12.95953 -12.57718 -12.56718 -12.27824 -12.15406 -11.68787 -11.16031 -11.01820 -10.87008 -10.71164 -10.66047 -10.22740 -10.18877 -10.13264 -9.97569 -9.38483 -9.09579 -8.90630 -8.44984 -8.04727 -7.23176 -6.04120 -4.07816 1.03906 1.21711 2.77270 3.04194 3.30626 3.37138 3.42679 3.55882 4.08721 4.40201 4.69725 4.80457 4.94558 5.04236 5.18010 5.28985 5.41283 5.47069 5.68944 5.75882 5.84602 5.94152 6.19963 6.29627 6.29855 6.38983 6.42410 6.73262 6.80186 6.89501 6.96821 7.09111 7.35938 7.45438 7.48201 7.65256 7.81151 8.12792 8.26044 8.32965 8.53839 8.98781 9.57280 11.03090 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.042969 B = 0.003201 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.479963 B = 8746.443417 C = 9029.989354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.212 3.788 3 H 0.000 1.000 4 C -0.502 4.502 5 H 0.065 0.935 6 C 0.059 3.941 7 N -0.895 5.895 8 Si 0.898 3.102 9 H -0.282 1.282 10 H -0.273 1.273 11 H -0.287 1.287 12 N -0.519 5.519 13 C 0.033 3.967 14 C 0.033 3.967 15 C 0.514 3.486 16 O -0.496 6.496 17 N -0.684 5.684 18 C 0.152 3.848 19 C -0.106 4.106 20 C -0.123 4.123 21 C 0.077 3.923 22 O -0.500 6.500 23 C -0.126 4.126 24 C -0.137 4.137 25 H 0.088 0.912 26 H 0.036 0.964 27 H 0.007 0.993 28 H 0.261 0.739 29 H 0.006 0.994 30 H 0.060 0.940 31 H 0.076 0.924 32 H 0.053 0.947 33 H 0.108 0.892 34 H 0.409 0.591 35 H 0.142 0.858 36 H 0.130 0.870 37 H 0.386 0.614 38 H 0.129 0.871 39 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.656 -1.177 20.464 20.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.107 3.893 3 H 0.018 0.982 4 C -0.541 4.541 5 H 0.083 0.917 6 C -0.142 4.142 7 N -0.535 5.535 8 Si 0.726 3.274 9 H -0.208 1.208 10 H -0.198 1.198 11 H -0.213 1.213 12 N -0.245 5.245 13 C -0.115 4.115 14 C -0.098 4.098 15 C 0.302 3.698 16 O -0.368 6.368 17 N -0.331 5.331 18 C 0.057 3.943 19 C -0.127 4.127 20 C -0.142 4.142 21 C 0.033 3.967 22 O -0.310 6.310 23 C -0.145 4.145 24 C -0.157 4.157 25 H 0.106 0.894 26 H 0.056 0.944 27 H 0.026 0.974 28 H 0.070 0.930 29 H 0.025 0.975 30 H 0.079 0.921 31 H 0.095 0.905 32 H 0.071 0.929 33 H 0.125 0.875 34 H 0.245 0.755 35 H 0.160 0.840 36 H 0.148 0.852 37 H 0.241 0.759 38 H 0.147 0.853 39 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -0.943 -2.303 19.880 20.035 hybrid contribution -0.056 0.945 -0.581 1.111 sum -1.000 -1.358 19.299 19.373 Atomic orbital electron populations 1.21892 0.97694 0.99875 0.99869 1.19318 0.92339 0.92020 0.85646 0.98227 1.21146 1.31017 1.12370 0.89536 0.91653 1.24923 0.95162 0.95094 0.99046 1.69877 1.36984 1.23099 1.23490 0.86494 0.78423 0.80186 0.82329 1.20775 1.19750 1.21252 1.61910 1.10380 1.51742 1.00424 1.22348 0.87724 0.98775 1.02645 1.22031 1.03172 0.94549 0.90086 1.21330 0.77271 0.87743 0.83490 1.90674 1.38377 1.22905 1.84846 1.43815 1.64641 1.18736 1.05925 1.17834 0.98657 0.90623 0.87185 1.21162 0.99864 0.91806 0.99819 1.21331 1.00163 1.00509 0.92165 1.18424 1.02235 0.88733 0.87352 1.84866 1.37208 1.67345 1.41534 1.21144 1.01614 0.92461 0.99250 1.20759 1.03031 1.00125 0.91834 0.89386 0.94438 0.97448 0.92960 0.97528 0.92108 0.90490 0.92898 0.87462 0.75499 0.84003 0.85168 0.75942 0.85290 0.85325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.18 8.76 37.16 0.33 -2.86 16 2 C 0.21 5.27 2.06 -68.86 -0.14 5.13 16 3 H 0.00 0.00 8.14 -51.93 -0.42 -0.42 16 4 C -0.50 -13.75 7.93 -34.44 -0.27 -14.03 16 5 H 0.07 1.82 6.39 -52.49 -0.34 1.48 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 7 N -0.90 -25.14 11.32 55.43 0.63 -24.51 16 8 Si 0.90 21.36 29.54 -169.99 -5.02 16.33 16 9 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 10 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 12 N -0.52 -11.35 4.36 -237.73 -1.04 -12.38 16 13 C 0.03 0.70 8.88 60.06 0.53 1.24 16 14 C 0.03 0.57 5.27 -4.97 -0.03 0.54 16 15 C 0.51 8.26 7.26 -10.98 -0.08 8.18 16 16 O -0.50 -9.71 12.03 5.54 0.07 -9.65 16 17 N -0.68 -8.26 5.35 -9.83 -0.05 -8.32 16 18 C 0.15 1.89 6.28 -83.62 -0.53 1.36 16 19 C -0.11 -1.44 8.65 -39.41 -0.34 -1.78 16 20 C -0.12 -1.45 9.98 -39.46 -0.39 -1.84 16 21 C 0.08 0.84 6.70 -39.22 -0.26 0.58 16 22 O -0.50 -4.71 13.50 -19.64 -0.27 -4.97 16 23 C -0.13 -1.24 9.98 -39.46 -0.39 -1.63 16 24 C -0.14 -1.39 9.96 -39.41 -0.39 -1.78 16 25 H 0.09 2.27 6.07 -51.93 -0.32 1.96 16 26 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 27 H 0.01 0.14 6.20 -51.93 -0.32 -0.19 16 28 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 29 H 0.01 0.13 8.14 -51.93 -0.42 -0.29 16 30 H 0.06 1.24 5.82 -51.93 -0.30 0.94 16 31 H 0.08 1.73 6.23 -51.93 -0.32 1.41 16 32 H 0.05 0.83 8.12 -51.93 -0.42 0.40 16 33 H 0.11 1.71 5.83 -51.93 -0.30 1.41 16 34 H 0.41 3.49 8.82 -40.82 -0.36 3.13 16 35 H 0.14 2.19 6.42 -52.49 -0.34 1.85 16 36 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 37 H 0.39 1.65 9.06 45.56 0.41 2.07 16 38 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 39 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 LS Contribution 320.32 15.07 4.83 4.83 Total: -1.00 -32.59 320.32 -7.20 -39.79 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -4.28 Total: 4.26 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: -2.07 Total: -5.38 kcal Atomic # 7 Polarization: -44.75 SS G_CDS: -0.46 Total: -45.21 kcal Atomic # 8 Polarization: -14.42 SS G_CDS: -0.20 Total: -14.62 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.59 -7.20 -39.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748802541.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.185 kcal (2) G-P(sol) polarization free energy of solvation -32.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds