Wall clock time and date at job start Tue Mar 31 2020 00:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08993 * 109.47269 * 2 1 4 4 C 1.50702 * 109.47193 * 239.99923 * 2 1 3 5 5 H 1.07995 * 120.00109 * 240.00033 * 4 2 1 6 6 C 1.37885 * 119.99624 * 59.99866 * 4 2 1 7 7 N 1.31512 * 120.00230 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99797 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.46850 * 270.00139 * 8 6 4 10 10 H 1.48500 * 109.47070 * 29.99759 * 8 6 4 11 11 H 1.48495 * 109.47212 * 150.00287 * 8 6 4 12 12 N 1.46906 * 109.47217 * 120.00389 * 2 1 3 13 13 C 1.46895 * 110.99895 * 176.04775 * 12 2 1 14 14 C 1.46904 * 110.99437 * 299.99555 * 12 2 1 15 15 C 1.50706 * 109.46673 * 170.00052 * 14 12 2 16 16 O 1.21296 * 119.99974 * 0.02562 * 15 14 12 17 17 N 1.34772 * 119.99810 * 180.02562 * 15 14 12 18 18 C 1.40110 * 119.99805 * 174.72994 * 17 15 14 19 19 C 1.38843 * 120.01497 * 326.53983 * 18 17 15 20 20 C 1.38094 * 119.98508 * 179.71973 * 19 18 17 21 21 C 1.38723 * 120.01191 * 0.55828 * 20 19 18 22 22 O 1.35969 * 119.98744 * 179.70102 * 21 20 19 23 23 C 1.38729 * 120.02993 * 359.72080 * 21 20 19 24 24 C 1.38084 * 120.01404 * 0.02562 * 23 21 20 25 25 H 1.08995 * 109.47476 * 59.99997 * 1 2 3 26 26 H 1.09007 * 109.47289 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47339 * 299.99331 * 1 2 3 28 28 H 0.96992 * 119.99992 * 180.02562 * 7 6 4 29 29 H 1.09004 * 109.47656 * 59.99756 * 13 12 2 30 30 H 1.08997 * 109.47146 * 179.97438 * 13 12 2 31 31 H 1.09000 * 109.47356 * 299.99804 * 13 12 2 32 32 H 1.08992 * 109.47516 * 289.99959 * 14 12 2 33 33 H 1.09005 * 109.46627 * 50.00727 * 14 12 2 34 34 H 0.97001 * 120.00315 * 354.72765 * 17 15 14 35 35 H 1.07997 * 120.01060 * 359.97438 * 19 18 17 36 36 H 1.07998 * 119.99655 * 180.28278 * 20 19 18 37 37 H 0.96703 * 113.99655 * 270.02562 * 22 21 20 38 38 H 1.08000 * 119.98936 * 179.97438 * 23 21 20 39 39 H 1.08001 * 120.00697 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9435 0.8302 -2.6034 8 14 2.3212 -1.1203 -4.0080 9 1 3.6296 -0.5458 -4.4124 10 1 2.4858 -2.5662 -3.7120 11 1 1.3430 -0.9492 -5.1121 12 7 2.0197 -0.6926 1.1994 13 6 3.4850 -0.7946 1.1870 14 6 1.5487 -0.0264 2.4211 15 6 1.8580 -0.8912 3.6159 16 8 2.4163 -1.9574 3.4646 17 7 1.5142 -0.4800 4.8525 18 6 1.7010 -1.3299 5.9505 19 6 1.5570 -2.7025 5.7987 20 6 1.7468 -3.5402 6.8801 21 6 2.0699 -3.0096 8.1205 22 8 2.2508 -3.8343 9.1862 23 6 2.2082 -1.6378 8.2741 24 6 2.0238 -0.7995 7.1924 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 0.7088 1.1614 -3.4844 29 1 3.9187 0.2051 1.1591 30 1 3.8209 -1.3110 2.0862 31 1 3.8030 -1.3531 0.3066 32 1 2.0519 0.9345 2.5280 33 1 0.4722 0.1323 2.3563 34 1 1.1376 0.4045 4.9823 35 1 1.3006 -3.1154 4.8343 36 1 1.6394 -4.6082 6.7612 37 1 1.4440 -4.0083 9.6902 38 1 2.4594 -1.2254 9.2402 39 1 2.1311 0.2684 7.3123 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000748802541.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:43:23 Heat of formation + Delta-G solvation = -57.361396 kcal Electronic energy + Delta-G solvation = -21187.954214 eV Core-core repulsion = 17902.422585 eV Total energy + Delta-G solvation = -3285.531629 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.63161 -40.19168 -38.49424 -37.50909 -35.25426 -34.74286 -31.98475 -31.28238 -30.44805 -28.76447 -26.81538 -25.31988 -24.12414 -23.34830 -21.79261 -21.01894 -19.33829 -18.82368 -18.43217 -18.01829 -16.98708 -16.74667 -16.37604 -16.11350 -15.74417 -15.36918 -15.33272 -15.04637 -14.45878 -14.31076 -14.08918 -13.86350 -13.47548 -13.29156 -12.97591 -12.95059 -12.82498 -12.63933 -12.53460 -12.10171 -11.99986 -11.92830 -11.49839 -11.21428 -10.94031 -10.67260 -10.51137 -9.97275 -9.00507 -8.92020 -8.12654 -6.22890 0.15766 0.36506 1.41263 1.42852 1.53474 1.57986 1.95891 2.43065 2.70874 3.15850 3.34777 3.39861 3.73308 3.98385 4.01390 4.29930 4.36513 4.39810 4.52059 4.58620 4.61623 4.68946 4.91253 5.01830 5.01969 5.10077 5.14100 5.24500 5.32728 5.45258 5.48163 5.49266 5.71604 5.76350 5.92219 6.25148 6.33913 6.40274 6.70384 6.89667 6.90617 7.18652 7.45836 8.93303 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.042969 B = 0.003201 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.479963 B = 8746.443417 C = 9029.989354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.218 3.782 3 H -0.024 1.024 4 C -0.523 4.523 5 H 0.053 0.947 6 C 0.016 3.984 7 N -0.916 5.916 8 Si 0.956 3.044 9 H -0.276 1.276 10 H -0.274 1.274 11 H -0.280 1.280 12 N -0.536 5.536 13 C 0.043 3.957 14 C 0.033 3.967 15 C 0.519 3.481 16 O -0.538 6.538 17 N -0.663 5.663 18 C 0.129 3.871 19 C -0.126 4.126 20 C -0.136 4.136 21 C 0.082 3.918 22 O -0.509 6.509 23 C -0.124 4.124 24 C -0.123 4.123 25 H 0.063 0.937 26 H 0.027 0.973 27 H 0.042 0.958 28 H 0.263 0.737 29 H 0.011 0.989 30 H 0.068 0.932 31 H 0.054 0.946 32 H 0.075 0.925 33 H 0.120 0.880 34 H 0.428 0.572 35 H 0.114 0.886 36 H 0.134 0.866 37 H 0.409 0.591 38 H 0.157 0.843 39 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.679 -0.401 22.597 22.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.111 3.889 3 H -0.007 1.007 4 C -0.561 4.561 5 H 0.071 0.929 6 C -0.183 4.183 7 N -0.556 5.556 8 Si 0.782 3.218 9 H -0.202 1.202 10 H -0.199 1.199 11 H -0.206 1.206 12 N -0.261 5.261 13 C -0.105 4.105 14 C -0.098 4.098 15 C 0.307 3.693 16 O -0.414 6.414 17 N -0.311 5.311 18 C 0.035 3.965 19 C -0.147 4.147 20 C -0.156 4.156 21 C 0.037 3.963 22 O -0.322 6.322 23 C -0.143 4.143 24 C -0.144 4.144 25 H 0.082 0.918 26 H 0.046 0.954 27 H 0.061 0.939 28 H 0.072 0.928 29 H 0.029 0.971 30 H 0.086 0.914 31 H 0.073 0.927 32 H 0.092 0.908 33 H 0.138 0.862 34 H 0.267 0.733 35 H 0.132 0.868 36 H 0.152 0.848 37 H 0.268 0.732 38 H 0.175 0.825 39 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -1.000 -1.502 22.073 22.147 hybrid contribution -0.059 0.675 -1.065 1.263 sum -1.059 -0.827 21.008 21.051 Atomic orbital electron populations 1.21707 0.96777 0.99310 1.00433 1.19108 0.92969 0.90464 0.86324 1.00691 1.21414 1.31225 1.12297 0.91181 0.92917 1.25615 0.95339 0.95777 1.01578 1.69978 1.37553 1.23956 1.24129 0.85585 0.78131 0.78930 0.79158 1.20164 1.19895 1.20554 1.61753 1.10629 1.52431 1.01296 1.22206 0.87694 0.98684 1.01894 1.22082 1.03943 0.95233 0.88539 1.21047 0.77000 0.86873 0.84392 1.90668 1.40630 1.24498 1.85571 1.43456 1.63580 1.19420 1.04645 1.17986 1.00336 0.90202 0.87997 1.21047 1.01504 0.92954 0.99194 1.21420 1.00891 1.00725 0.92518 1.18528 1.01027 0.89479 0.87230 1.84803 1.39039 1.67149 1.41183 1.21481 1.00521 0.91920 1.00365 1.21060 1.01042 1.01771 0.90478 0.91778 0.95402 0.93899 0.92806 0.97079 0.91374 0.92687 0.90766 0.86206 0.73281 0.86836 0.84798 0.73193 0.82496 0.82226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.83 8.76 71.98 0.63 -5.20 16 2 C 0.22 10.92 2.06 44.17 0.09 11.01 16 3 H -0.02 -1.32 8.14 -2.39 -0.02 -1.34 16 4 C -0.52 -29.19 7.93 25.60 0.20 -28.99 16 5 H 0.05 3.01 6.39 -2.91 -0.02 3.00 16 6 C 0.02 0.88 5.30 84.66 0.45 1.32 16 7 N -0.92 -51.88 11.32 21.45 0.24 -51.63 16 8 Si 0.96 44.17 29.54 68.60 2.03 46.20 16 9 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 10 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 11 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 12 N -0.54 -23.52 4.36 -906.03 -3.95 -27.47 16 13 C 0.04 1.86 8.88 127.69 1.13 3.00 16 14 C 0.03 1.09 5.27 85.56 0.45 1.54 16 15 C 0.52 16.28 7.26 87.66 0.64 16.92 16 16 O -0.54 -21.36 12.03 -3.08 -0.04 -21.40 16 17 N -0.66 -14.83 5.35 -303.39 -1.62 -16.45 16 18 C 0.13 3.01 6.28 38.11 0.24 3.25 16 19 C -0.13 -3.45 8.65 22.38 0.19 -3.25 16 20 C -0.14 -3.17 9.98 22.35 0.22 -2.94 16 21 C 0.08 1.61 6.70 22.50 0.15 1.76 16 22 O -0.51 -8.28 13.50 -93.20 -1.26 -9.54 16 23 C -0.12 -2.03 9.98 22.35 0.22 -1.80 16 24 C -0.12 -2.10 9.96 22.38 0.22 -1.87 16 25 H 0.06 3.33 6.07 -2.39 -0.01 3.32 16 26 H 0.03 1.31 8.14 -2.38 -0.02 1.29 16 27 H 0.04 1.65 6.20 -2.39 -0.01 1.64 16 28 H 0.26 14.13 8.31 -92.71 -0.77 13.36 16 29 H 0.01 0.44 8.14 -2.38 -0.02 0.42 16 30 H 0.07 2.81 5.82 -2.39 -0.01 2.80 16 31 H 0.05 2.55 6.23 -2.39 -0.01 2.54 16 32 H 0.07 2.16 8.12 -2.39 -0.02 2.14 16 33 H 0.12 3.59 5.83 -2.38 -0.01 3.58 16 34 H 0.43 6.08 8.82 -92.71 -0.82 5.26 16 35 H 0.11 3.71 6.42 -2.91 -0.02 3.69 16 36 H 0.13 2.83 8.06 -2.91 -0.02 2.81 16 37 H 0.41 2.36 9.06 -74.06 -0.67 1.69 16 38 H 0.16 1.70 8.06 -2.91 -0.02 1.68 16 39 H 0.16 1.69 8.06 -2.91 -0.02 1.67 16 Total: -1.00 -71.37 320.32 -0.15 -71.52 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -0.40 Total: 14.04 kcal Atomic # 6 Polarization: -10.11 SS G_CDS: 4.85 Total: -5.26 kcal Atomic # 7 Polarization: -90.23 SS G_CDS: -5.33 Total: -95.56 kcal Atomic # 8 Polarization: -29.64 SS G_CDS: -1.30 Total: -30.94 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -71.37 -0.15 -71.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748802541.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.156 kcal (2) G-P(sol) polarization free energy of solvation -71.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds