Wall clock time and date at job start Tue Mar 31 2020 00:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 113.99418 * 2 1 4 4 C 1.53002 * 109.47022 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.47280 * 185.00057 * 4 3 2 6 6 C 1.52999 * 109.47186 * 305.00047 * 4 3 2 7 7 N 1.46501 * 109.47139 * 64.99706 * 4 3 2 8 8 N 1.40101 * 120.00130 * 150.00086 * 7 4 3 9 9 C 1.29739 * 120.00374 * 180.02562 * 8 7 4 10 10 C 1.47501 * 120.00294 * 179.97438 * 9 8 7 11 11 C 1.39756 * 120.11910 * 0.02562 * 10 9 8 12 12 C 1.37975 * 119.97695 * 179.97438 * 11 10 9 13 13 C 1.38257 * 120.23003 * 359.97438 * 12 11 10 14 14 C 1.38975 * 120.24579 * 0.04159 * 13 12 11 15 15 O 1.35759 * 119.99062 * 180.02562 * 14 13 12 16 16 C 1.34834 * 117.00306 * 174.42222 * 15 14 13 17 17 H 1.07999 * 119.99544 * 5.06513 * 16 15 14 18 18 C 1.38653 * 120.00355 * 185.06051 * 16 15 14 19 19 N 1.31558 * 119.99810 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99975 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.47214 * 0.02562 * 20 18 16 22 22 H 1.48494 * 109.46892 * 120.00387 * 20 18 16 23 23 H 1.48499 * 109.47314 * 240.00525 * 20 18 16 24 24 C 1.38604 * 120.01731 * 359.95584 * 14 13 12 25 25 H 1.08994 * 109.47472 * 60.00642 * 1 2 3 26 26 H 1.09010 * 109.46501 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47508 * 299.99968 * 1 2 3 28 28 H 1.08995 * 109.47519 * 59.99842 * 3 2 1 29 29 H 1.08998 * 109.46893 * 299.99445 * 3 2 1 30 30 H 1.09004 * 109.47435 * 180.02562 * 6 4 3 31 31 H 1.09006 * 109.47101 * 299.99790 * 6 4 3 32 32 H 1.09000 * 109.47003 * 59.99840 * 6 4 3 33 33 H 0.96996 * 120.00215 * 330.00119 * 7 4 3 34 34 H 1.08006 * 119.99796 * 359.97438 * 9 8 7 35 35 H 1.08000 * 120.01187 * 0.02562 * 11 10 9 36 36 H 1.07999 * 119.88533 * 179.97438 * 12 11 10 37 37 H 1.08006 * 119.87662 * 180.02562 * 13 12 11 38 38 H 0.96999 * 119.99545 * 179.97438 * 19 18 16 39 39 H 1.08006 * 120.11407 * 180.29990 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5353 1.1848 0.0006 5 1 3.9783 2.1767 0.0902 6 6 3.9780 0.3200 1.1826 7 7 3.9766 0.5641 -1.2508 8 7 5.2302 0.8848 -1.7879 9 6 5.6208 0.3355 -2.8965 10 6 6.9404 0.6736 -3.4622 11 6 7.7722 1.5850 -2.8059 12 6 9.0062 1.8987 -3.3375 13 6 9.4245 1.3140 -4.5184 14 6 8.6048 0.4067 -5.1791 15 8 9.0209 -0.1647 -6.3381 16 6 8.2310 -1.1207 -6.8674 17 1 7.2752 -1.3424 -6.4161 18 6 8.6456 -1.8189 -7.9913 19 7 9.8101 -1.5491 -8.5408 20 14 7.5515 -3.1437 -8.7241 21 1 6.3044 -3.2535 -7.9255 22 1 7.2119 -2.7863 -10.1248 23 1 8.2681 -4.4442 -8.7049 24 6 7.3632 0.0841 -4.6542 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0278 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.6884 1.8465 0.8899 29 1 1.6885 1.8463 -0.8900 30 1 5.0647 0.2344 1.1834 31 1 3.6497 0.7818 2.1138 32 1 3.5351 -0.6719 1.0930 33 1 3.4009 -0.0689 -1.7076 34 1 4.9798 -0.3693 -3.4051 35 1 7.4496 2.0429 -1.8825 36 1 9.6476 2.6035 -2.8293 37 1 10.3917 1.5634 -4.9292 38 1 10.1003 -2.0379 -9.3268 39 1 6.7269 -0.6244 -5.1638 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777903929.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:56:52 Heat of formation + Delta-G solvation = -6.454147 kcal Electronic energy + Delta-G solvation = -20328.377146 eV Core-core repulsion = 17045.053021 eV Total energy + Delta-G solvation = -3283.324125 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -38.97135 -38.67443 -36.99747 -36.07669 -33.98140 -32.22644 -30.75730 -28.97141 -27.84228 -27.63244 -25.92101 -25.25214 -23.05036 -21.54462 -20.97906 -19.92080 -18.00472 -16.99399 -16.96882 -16.34723 -16.19271 -15.59602 -14.98848 -14.68396 -14.38722 -14.19093 -13.76206 -13.58305 -13.49795 -13.16039 -12.77934 -12.47848 -12.35128 -12.08309 -12.03654 -11.64830 -11.45192 -11.22103 -11.13299 -10.75126 -10.72373 -10.67267 -10.40526 -10.06246 -9.81075 -9.34528 -8.85412 -8.58124 -7.44254 -7.07917 -6.40737 -4.00068 1.58289 2.41029 2.97431 3.09227 3.15998 3.20377 3.21608 3.43304 3.99894 4.55386 4.70145 4.79390 4.92061 4.99908 5.04870 5.13599 5.20247 5.21585 5.31370 5.33626 5.37934 5.47985 5.68518 5.83052 5.88937 6.03553 6.16991 6.21590 6.27210 6.54128 6.72857 6.77599 6.87871 7.12991 7.24734 7.35573 7.41887 7.46181 7.83645 8.03912 8.65690 9.05248 9.75921 10.77654 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.018185 B = 0.003335 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.377706 B = 8393.487476 C = 9744.043367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.387 6.387 3 C 0.051 3.949 4 C 0.189 3.811 5 H 0.092 0.908 6 C -0.164 4.164 7 N -0.661 5.661 8 N -0.232 5.232 9 C 0.079 3.921 10 C -0.004 4.004 11 C -0.175 4.175 12 C -0.084 4.084 13 C -0.181 4.181 14 C 0.150 3.850 15 O -0.180 6.180 16 C -0.391 4.391 17 H 0.092 0.908 18 C 0.039 3.961 19 N -0.864 5.864 20 Si 0.939 3.061 21 H -0.267 1.267 22 H -0.277 1.277 23 H -0.276 1.276 24 C -0.209 4.209 25 H 0.041 0.959 26 H 0.086 0.914 27 H 0.041 0.959 28 H 0.063 0.937 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.063 0.937 33 H 0.378 0.622 34 H 0.104 0.896 35 H 0.115 0.885 36 H 0.114 0.886 37 H 0.117 0.883 38 H 0.269 0.731 39 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.094 4.401 15.632 22.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.306 6.306 3 C -0.027 4.027 4 C 0.083 3.917 5 H 0.110 0.890 6 C -0.223 4.223 7 N -0.399 5.399 8 N -0.039 5.039 9 C -0.133 4.133 10 C -0.006 4.006 11 C -0.196 4.196 12 C -0.102 4.102 13 C -0.201 4.201 14 C 0.097 3.903 15 O -0.084 6.084 16 C -0.467 4.467 17 H 0.109 0.891 18 C -0.165 4.165 19 N -0.500 5.500 20 Si 0.764 3.236 21 H -0.191 1.191 22 H -0.202 1.202 23 H -0.202 1.202 24 C -0.231 4.231 25 H 0.059 0.941 26 H 0.104 0.896 27 H 0.059 0.941 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.215 0.785 34 H 0.122 0.878 35 H 0.133 0.867 36 H 0.132 0.868 37 H 0.135 0.865 38 H 0.078 0.922 39 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -14.509 4.911 16.220 22.309 hybrid contribution -1.492 -1.354 -1.104 2.298 sum -16.001 3.557 15.116 22.297 Atomic orbital electron populations 1.22747 0.81008 1.02838 0.99944 1.87905 1.19664 1.27603 1.95393 1.22950 0.93614 0.85196 1.00944 1.20576 0.90331 0.97381 0.83407 0.89015 1.22220 1.01908 1.01091 0.97034 1.47962 1.14714 1.51226 1.26015 1.74145 0.99584 1.18780 1.11359 1.24051 0.96563 0.99280 0.93376 1.18024 0.91008 0.97274 0.94321 1.20769 0.95236 1.02169 1.01446 1.20608 0.95823 0.98774 0.95035 1.20347 1.00536 1.01952 0.97307 1.19186 0.91806 0.92521 0.86813 1.84003 1.46617 1.47611 1.30159 1.21343 1.00825 1.13396 1.11155 0.89081 1.25260 0.96811 0.98248 0.96199 1.70049 1.18934 1.40071 1.20905 0.85672 0.79226 0.79679 0.78997 1.19147 1.20217 1.20189 1.21184 0.98154 1.05849 0.97867 0.94076 0.89596 0.94074 0.91852 0.92652 0.92192 0.92401 0.91836 0.78475 0.87830 0.86670 0.86840 0.86477 0.92153 0.85251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.32 16 2 O -0.39 -3.67 9.54 -35.23 -0.34 -4.01 16 3 C 0.05 0.43 5.71 37.16 0.21 0.64 16 4 C 0.19 1.97 3.65 -67.93 -0.25 1.72 16 5 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 6 C -0.16 -1.66 9.32 37.16 0.35 -1.31 16 7 N -0.66 -8.69 6.10 -4.89 -0.03 -8.72 16 8 N -0.23 -3.68 10.61 32.16 0.34 -3.33 16 9 C 0.08 1.32 10.75 -14.66 -0.16 1.16 16 10 C 0.00 -0.07 5.87 -105.07 -0.62 -0.69 16 11 C -0.18 -3.20 9.58 -39.11 -0.37 -3.58 16 12 C -0.08 -1.53 10.02 -39.67 -0.40 -1.93 16 13 C -0.18 -3.83 9.98 -39.30 -0.39 -4.22 16 14 C 0.15 3.61 6.64 -39.17 -0.26 3.35 16 15 O -0.18 -5.12 9.76 0.01 0.00 -5.12 16 16 C -0.39 -10.88 9.48 30.89 0.29 -10.58 16 17 H 0.09 2.34 5.20 -52.49 -0.27 2.07 16 18 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 19 N -0.86 -25.40 13.67 55.48 0.76 -24.64 16 20 Si 0.94 20.55 29.55 -169.99 -5.02 15.52 16 21 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 22 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 23 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 24 C -0.21 -4.53 8.91 -38.96 -0.35 -4.88 16 25 H 0.04 0.25 8.14 -51.93 -0.42 -0.18 16 26 H 0.09 0.49 8.14 -51.92 -0.42 0.06 16 27 H 0.04 0.22 8.14 -51.93 -0.42 -0.21 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.70 7.56 -51.93 -0.39 0.31 16 33 H 0.38 4.79 8.36 -182.60 -1.53 3.27 16 34 H 0.10 1.58 8.02 -52.48 -0.42 1.16 16 35 H 0.12 1.94 7.55 -52.49 -0.40 1.54 16 36 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 37 H 0.12 2.37 8.06 -52.48 -0.42 1.95 16 38 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 39 H 0.13 2.78 5.63 -52.48 -0.30 2.49 16 LS Contribution 338.84 15.07 5.11 5.11 Total: -1.00 -31.22 338.84 -6.78 -38.00 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -6.67 Total: 5.22 kcal Atomic # 6 Polarization: -17.11 SS G_CDS: -0.93 Total: -18.03 kcal Atomic # 7 Polarization: -37.76 SS G_CDS: 1.07 Total: -36.69 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: -0.34 Total: -9.12 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.22 -6.78 -38.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777903929.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.544 kcal (2) G-P(sol) polarization free energy of solvation -31.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds