Wall clock time and date at job start Tue Mar 31 2020 00:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 113.99418 * 2 1 4 4 C 1.53002 * 109.47022 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.47280 * 185.00057 * 4 3 2 6 6 C 1.52999 * 109.47186 * 305.00047 * 4 3 2 7 7 N 1.46501 * 109.47139 * 64.99706 * 4 3 2 8 8 N 1.40101 * 120.00130 * 150.00086 * 7 4 3 9 9 C 1.29739 * 120.00374 * 180.02562 * 8 7 4 10 10 C 1.47501 * 120.00294 * 179.97438 * 9 8 7 11 11 C 1.39756 * 120.11910 * 0.02562 * 10 9 8 12 12 C 1.37975 * 119.97695 * 179.97438 * 11 10 9 13 13 C 1.38257 * 120.23003 * 359.97438 * 12 11 10 14 14 C 1.38975 * 120.24579 * 0.04159 * 13 12 11 15 15 O 1.35759 * 119.99062 * 180.02562 * 14 13 12 16 16 C 1.34834 * 117.00306 * 174.42222 * 15 14 13 17 17 H 1.07999 * 119.99544 * 5.06513 * 16 15 14 18 18 C 1.38653 * 120.00355 * 185.06051 * 16 15 14 19 19 N 1.31558 * 119.99810 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99975 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.47214 * 0.02562 * 20 18 16 22 22 H 1.48494 * 109.46892 * 120.00387 * 20 18 16 23 23 H 1.48499 * 109.47314 * 240.00525 * 20 18 16 24 24 C 1.38604 * 120.01731 * 359.95584 * 14 13 12 25 25 H 1.08994 * 109.47472 * 60.00642 * 1 2 3 26 26 H 1.09010 * 109.46501 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47508 * 299.99968 * 1 2 3 28 28 H 1.08995 * 109.47519 * 59.99842 * 3 2 1 29 29 H 1.08998 * 109.46893 * 299.99445 * 3 2 1 30 30 H 1.09004 * 109.47435 * 180.02562 * 6 4 3 31 31 H 1.09006 * 109.47101 * 299.99790 * 6 4 3 32 32 H 1.09000 * 109.47003 * 59.99840 * 6 4 3 33 33 H 0.96996 * 120.00215 * 330.00119 * 7 4 3 34 34 H 1.08006 * 119.99796 * 359.97438 * 9 8 7 35 35 H 1.08000 * 120.01187 * 0.02562 * 11 10 9 36 36 H 1.07999 * 119.88533 * 179.97438 * 12 11 10 37 37 H 1.08006 * 119.87662 * 180.02562 * 13 12 11 38 38 H 0.96999 * 119.99545 * 179.97438 * 19 18 16 39 39 H 1.08006 * 120.11407 * 180.29990 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5353 1.1848 0.0006 5 1 3.9783 2.1767 0.0902 6 6 3.9780 0.3200 1.1826 7 7 3.9766 0.5641 -1.2508 8 7 5.2302 0.8848 -1.7879 9 6 5.6208 0.3355 -2.8965 10 6 6.9404 0.6736 -3.4622 11 6 7.7722 1.5850 -2.8059 12 6 9.0062 1.8987 -3.3375 13 6 9.4245 1.3140 -4.5184 14 6 8.6048 0.4067 -5.1791 15 8 9.0209 -0.1647 -6.3381 16 6 8.2310 -1.1207 -6.8674 17 1 7.2752 -1.3424 -6.4161 18 6 8.6456 -1.8189 -7.9913 19 7 9.8101 -1.5491 -8.5408 20 14 7.5515 -3.1437 -8.7241 21 1 6.3044 -3.2535 -7.9255 22 1 7.2119 -2.7863 -10.1248 23 1 8.2681 -4.4442 -8.7049 24 6 7.3632 0.0841 -4.6542 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0278 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.6884 1.8465 0.8899 29 1 1.6885 1.8463 -0.8900 30 1 5.0647 0.2344 1.1834 31 1 3.6497 0.7818 2.1138 32 1 3.5351 -0.6719 1.0930 33 1 3.4009 -0.0689 -1.7076 34 1 4.9798 -0.3693 -3.4051 35 1 7.4496 2.0429 -1.8825 36 1 9.6476 2.6035 -2.8293 37 1 10.3917 1.5634 -4.9292 38 1 10.1003 -2.0379 -9.3268 39 1 6.7269 -0.6244 -5.1638 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777903929.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:56:51 Heat of formation + Delta-G solvation = -26.901525 kcal Electronic energy + Delta-G solvation = -20329.263811 eV Core-core repulsion = 17045.053021 eV Total energy + Delta-G solvation = -3284.210790 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.69566 -39.43357 -38.47082 -37.38547 -35.06899 -34.20114 -32.16139 -30.58946 -29.12595 -28.26180 -27.25285 -26.53325 -24.46141 -23.20270 -21.86544 -21.41076 -19.80713 -18.65937 -17.91130 -17.30885 -17.07902 -16.68997 -16.49422 -16.05063 -15.87025 -15.49067 -15.47475 -14.99715 -14.61224 -14.29071 -14.11848 -13.97553 -13.50849 -13.41598 -13.03561 -12.85375 -12.72927 -12.42234 -12.35821 -12.27426 -12.07372 -12.00700 -11.93181 -11.30367 -11.01590 -10.78643 -10.65151 -10.01776 -9.07096 -8.49901 -8.43031 -6.10969 0.07763 0.77899 1.37455 1.44621 1.55390 1.70488 1.89285 2.20568 2.82736 2.92831 3.27207 3.55821 3.79010 3.90724 4.09412 4.14760 4.35454 4.36253 4.44866 4.48151 4.51420 4.56256 4.58638 4.68248 4.73950 4.85849 4.90137 4.94164 5.11640 5.17028 5.23150 5.30176 5.38482 5.71821 5.73686 5.84907 6.06726 6.14865 6.23137 6.29841 7.02175 7.44776 7.83419 8.80569 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.018185 B = 0.003335 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.377706 B = 8393.487476 C = 9744.043367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.410 6.410 3 C 0.056 3.944 4 C 0.180 3.820 5 H 0.098 0.902 6 C -0.157 4.157 7 N -0.653 5.653 8 N -0.224 5.224 9 C 0.056 3.944 10 C 0.002 3.998 11 C -0.164 4.164 12 C -0.070 4.070 13 C -0.195 4.195 14 C 0.114 3.886 15 O -0.231 6.231 16 C -0.410 4.410 17 H 0.102 0.898 18 C -0.023 4.023 19 N -0.922 5.922 20 Si 1.016 2.984 21 H -0.251 1.251 22 H -0.269 1.269 23 H -0.270 1.270 24 C -0.219 4.219 25 H 0.045 0.955 26 H 0.091 0.909 27 H 0.055 0.945 28 H 0.089 0.911 29 H 0.056 0.944 30 H 0.042 0.958 31 H 0.081 0.919 32 H 0.052 0.948 33 H 0.381 0.619 34 H 0.115 0.885 35 H 0.140 0.860 36 H 0.156 0.844 37 H 0.118 0.882 38 H 0.272 0.728 39 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.575 5.058 18.217 25.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.329 6.329 3 C -0.022 4.022 4 C 0.075 3.925 5 H 0.116 0.884 6 C -0.216 4.216 7 N -0.392 5.392 8 N -0.032 5.032 9 C -0.155 4.155 10 C -0.001 4.001 11 C -0.184 4.184 12 C -0.087 4.087 13 C -0.215 4.215 14 C 0.064 3.936 15 O -0.138 6.138 16 C -0.487 4.487 17 H 0.119 0.881 18 C -0.220 4.220 19 N -0.560 5.560 20 Si 0.836 3.164 21 H -0.174 1.174 22 H -0.194 1.194 23 H -0.195 1.195 24 C -0.240 4.240 25 H 0.064 0.936 26 H 0.109 0.891 27 H 0.074 0.926 28 H 0.107 0.893 29 H 0.074 0.926 30 H 0.061 0.939 31 H 0.100 0.900 32 H 0.071 0.929 33 H 0.219 0.781 34 H 0.133 0.867 35 H 0.158 0.842 36 H 0.174 0.826 37 H 0.136 0.864 38 H 0.081 0.919 39 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -17.019 5.600 18.864 26.017 hybrid contribution -0.862 -1.356 -1.516 2.209 sum -17.881 4.244 17.349 25.273 Atomic orbital electron populations 1.22891 0.79584 1.03585 1.00874 1.87869 1.21269 1.28210 1.95602 1.22919 0.91855 0.85159 1.02251 1.20887 0.92031 0.97431 0.82102 0.88396 1.22143 1.00638 1.00710 0.98067 1.48234 1.13498 1.50888 1.26545 1.73998 1.00839 1.17862 1.10507 1.23776 0.96139 1.01110 0.94441 1.18210 0.92257 0.96438 0.93157 1.21159 0.94767 1.00834 1.01662 1.21030 0.96153 0.98110 0.93445 1.20610 1.00561 1.01934 0.98433 1.19723 0.93464 0.93693 0.86734 1.83965 1.48079 1.49218 1.32571 1.21845 1.01417 1.13715 1.11680 0.88058 1.26541 0.98433 1.00675 0.96393 1.70192 1.21452 1.42298 1.22107 0.84557 0.77534 0.76112 0.78203 1.17448 1.19405 1.19475 1.21184 0.97463 1.06387 0.99005 0.93648 0.89071 0.92602 0.89277 0.92559 0.93860 0.89989 0.92916 0.78105 0.86741 0.84238 0.82617 0.86439 0.91936 0.85909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 113.37 1.25 1.53 16 2 O -0.41 -6.71 9.54 -148.98 -1.42 -8.13 16 3 C 0.06 0.76 5.71 71.98 0.41 1.17 16 4 C 0.18 3.23 3.65 44.99 0.16 3.39 16 5 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 6 C -0.16 -2.77 9.32 71.98 0.67 -2.10 16 7 N -0.65 -15.56 6.10 -169.38 -1.03 -16.59 16 8 N -0.22 -6.54 10.61 -52.16 -0.55 -7.10 16 9 C 0.06 1.79 10.75 87.45 0.94 2.73 16 10 C 0.00 0.06 5.87 -20.16 -0.12 -0.05 16 11 C -0.16 -5.56 9.58 22.57 0.22 -5.34 16 12 C -0.07 -2.37 10.02 22.21 0.22 -2.15 16 13 C -0.20 -8.32 9.98 22.45 0.22 -8.10 16 14 C 0.11 5.71 6.64 22.53 0.15 5.86 16 15 O -0.23 -13.96 9.76 -22.88 -0.22 -14.18 16 16 C -0.41 -23.94 9.48 67.92 0.64 -23.30 16 17 H 0.10 5.42 5.20 -2.91 -0.02 5.41 16 18 C -0.02 -1.33 5.49 84.83 0.47 -0.86 16 19 N -0.92 -56.88 13.67 21.61 0.30 -56.58 16 20 Si 1.02 43.10 29.55 68.60 2.03 45.13 16 21 H -0.25 -9.82 7.11 99.48 0.71 -9.11 16 22 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 23 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 24 C -0.22 -9.70 8.91 22.67 0.20 -9.50 16 25 H 0.04 0.43 8.14 -2.39 -0.02 0.41 16 26 H 0.09 0.84 8.14 -2.38 -0.02 0.82 16 27 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 28 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 32 H 0.05 1.05 7.56 -2.39 -0.02 1.04 16 33 H 0.38 8.85 8.36 -213.32 -1.78 7.07 16 34 H 0.12 3.36 8.02 -2.91 -0.02 3.34 16 35 H 0.14 4.12 7.55 -2.91 -0.02 4.10 16 36 H 0.16 3.99 8.06 -2.91 -0.02 3.96 16 37 H 0.12 4.89 8.06 -2.91 -0.02 4.86 16 38 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 39 H 0.12 5.48 5.63 -2.91 -0.02 5.47 16 Total: -1.00 -71.13 338.84 3.80 -67.32 By element: Atomic # 1 Polarization: 27.58 SS G_CDS: -0.73 Total: 26.85 kcal Atomic # 6 Polarization: -42.16 SS G_CDS: 5.44 Total: -36.72 kcal Atomic # 7 Polarization: -78.98 SS G_CDS: -1.29 Total: -80.27 kcal Atomic # 8 Polarization: -20.67 SS G_CDS: -1.64 Total: -22.31 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -71.13 3.80 -67.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777903929.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.423 kcal (2) G-P(sol) polarization free energy of solvation -71.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds