Wall clock time and date at job start Tue Mar 31 2020 00:56:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42901 * 114.00093 * 2 1 4 4 C 1.53005 * 109.47200 * 180.02562 * 3 2 1 5 5 H 1.08999 * 109.46809 * 175.00247 * 4 3 2 6 6 C 1.52993 * 109.47378 * 54.99593 * 4 3 2 7 7 N 1.46501 * 109.46817 * 294.99473 * 4 3 2 8 8 N 1.40093 * 120.00242 * 210.00208 * 7 4 3 9 9 C 1.29744 * 120.00458 * 179.97438 * 8 7 4 10 10 C 1.47504 * 120.00069 * 179.97438 * 9 8 7 11 11 C 1.39748 * 120.12299 * 359.73363 * 10 9 8 12 12 C 1.37981 * 119.97922 * 179.74413 * 11 10 9 13 13 C 1.38257 * 120.22696 * 0.50388 * 12 11 10 14 14 C 1.38979 * 120.24652 * 359.76747 * 13 12 11 15 15 O 1.35756 * 119.98926 * 179.97438 * 14 13 12 16 16 C 1.34837 * 116.99826 * 174.48103 * 15 14 13 17 17 H 1.07997 * 119.99644 * 5.06772 * 16 15 14 18 18 C 1.38649 * 119.99939 * 185.05797 * 16 15 14 19 19 N 1.31555 * 119.99822 * 180.02562 * 18 16 15 20 20 Si 1.86801 * 119.99982 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47347 * 89.99829 * 20 18 16 22 22 H 1.48502 * 109.46795 * 209.99585 * 20 18 16 23 23 H 1.48496 * 109.47032 * 329.99703 * 20 18 16 24 24 C 1.38607 * 120.01636 * 359.97438 * 14 13 12 25 25 H 1.08997 * 109.47173 * 60.00013 * 1 2 3 26 26 H 1.09004 * 109.47179 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47108 * 299.99968 * 1 2 3 28 28 H 1.08996 * 109.47591 * 59.99826 * 3 2 1 29 29 H 1.09002 * 109.46675 * 300.00076 * 3 2 1 30 30 H 1.08999 * 109.47189 * 60.00231 * 6 4 3 31 31 H 1.09001 * 109.47232 * 180.02562 * 6 4 3 32 32 H 1.09001 * 109.46957 * 300.00028 * 6 4 3 33 33 H 0.96998 * 119.99893 * 29.99792 * 7 4 3 34 34 H 1.07998 * 119.99605 * 0.28080 * 9 8 7 35 35 H 1.08002 * 120.01439 * 359.97347 * 11 10 9 36 36 H 1.07992 * 119.88554 * 180.25456 * 12 11 10 37 37 H 1.07996 * 119.87472 * 179.74978 * 13 12 11 38 38 H 0.97000 * 120.00176 * 180.02562 * 19 18 16 39 39 H 1.08006 * 120.11664 * 180.02562 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.9784 2.1765 -0.0902 6 6 3.9781 0.3198 -1.1825 7 7 3.9766 0.5641 1.2510 8 7 5.2301 0.8847 1.7881 9 6 5.6207 0.3355 2.8968 10 6 6.9407 0.6728 3.4619 11 6 7.7752 1.5793 2.8024 12 6 9.0072 1.8966 3.3365 13 6 9.4249 1.3127 4.5180 14 6 8.6051 0.4057 5.1788 15 8 9.0207 -0.1649 6.3384 16 6 8.1346 -0.9466 6.9880 17 1 7.1749 -1.1610 6.5416 18 6 8.4557 -1.4752 8.2289 19 7 7.5914 -2.2382 8.8624 20 14 10.1156 -1.1039 9.0011 21 1 10.0131 0.1254 9.8279 22 1 10.5287 -2.2439 9.8584 23 1 11.1244 -0.8981 7.9311 24 6 7.3632 0.0836 4.6542 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.6886 1.8464 0.8899 29 1 1.6885 1.8463 -0.8900 30 1 3.6499 0.7815 -2.1137 31 1 5.0647 0.2333 -1.1826 32 1 3.5351 -0.6721 -1.0928 33 1 3.4008 -0.0688 1.7078 34 1 4.9813 -0.3723 3.4032 35 1 7.4543 2.0342 1.8769 36 1 9.6491 2.6005 2.8277 37 1 10.3921 1.5622 4.9289 38 1 7.8158 -2.6078 9.7307 39 1 6.7246 -0.6208 5.1666 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777903930.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:56:54 Heat of formation + Delta-G solvation = -23.974535 kcal Electronic energy + Delta-G solvation = -20331.317075 eV Core-core repulsion = 17047.233208 eV Total energy + Delta-G solvation = -3284.083866 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.81202 -39.44922 -38.56429 -37.42336 -35.08629 -34.37032 -32.18731 -30.77167 -29.18172 -28.27024 -27.14270 -26.54192 -24.52481 -23.10040 -21.88110 -21.43738 -19.81946 -18.84933 -17.92866 -17.31552 -17.11005 -16.79598 -16.55647 -16.12635 -15.68440 -15.56203 -15.44267 -15.13044 -14.65218 -14.31003 -14.10401 -14.02372 -13.92553 -13.45891 -13.05669 -12.86515 -12.73536 -12.50087 -12.38158 -12.35950 -12.02128 -11.97559 -11.91327 -11.39674 -11.06635 -10.87945 -10.66013 -10.04158 -9.15205 -8.52591 -8.45944 -6.18543 0.04780 0.73463 1.34792 1.38577 1.55440 1.66053 1.87389 2.31838 2.81920 2.86050 3.12839 3.25078 3.76980 3.88647 4.08214 4.13326 4.33133 4.35075 4.43846 4.47127 4.50301 4.54858 4.56900 4.66859 4.71942 4.84946 4.88868 4.92728 5.01330 5.19521 5.24523 5.37921 5.45890 5.68977 5.79135 5.84448 5.94555 6.13738 6.26596 6.28229 6.88782 7.41013 7.63361 8.65723 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.023884 B = 0.003110 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.075863 B = 9001.938510 C =10010.854307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.411 6.411 3 C 0.055 3.945 4 C 0.180 3.820 5 H 0.100 0.900 6 C -0.156 4.156 7 N -0.654 5.654 8 N -0.221 5.221 9 C 0.053 3.947 10 C -0.002 4.002 11 C -0.156 4.156 12 C -0.070 4.070 13 C -0.183 4.183 14 C 0.120 3.880 15 O -0.244 6.244 16 C -0.397 4.397 17 H 0.081 0.919 18 C 0.009 3.991 19 N -0.925 5.925 20 Si 0.970 3.030 21 H -0.266 1.266 22 H -0.270 1.270 23 H -0.261 1.261 24 C -0.215 4.215 25 H 0.057 0.943 26 H 0.090 0.910 27 H 0.044 0.956 28 H 0.055 0.945 29 H 0.091 0.909 30 H 0.082 0.918 31 H 0.043 0.957 32 H 0.051 0.949 33 H 0.380 0.620 34 H 0.108 0.892 35 H 0.141 0.859 36 H 0.163 0.837 37 H 0.133 0.867 38 H 0.284 0.716 39 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.641 9.063 -19.335 23.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.330 6.330 3 C -0.022 4.022 4 C 0.075 3.925 5 H 0.118 0.882 6 C -0.215 4.215 7 N -0.392 5.392 8 N -0.028 5.028 9 C -0.158 4.158 10 C -0.004 4.004 11 C -0.176 4.176 12 C -0.088 4.088 13 C -0.203 4.203 14 C 0.071 3.929 15 O -0.152 6.152 16 C -0.474 4.474 17 H 0.099 0.901 18 C -0.189 4.189 19 N -0.567 5.567 20 Si 0.793 3.207 21 H -0.191 1.191 22 H -0.195 1.195 23 H -0.185 1.185 24 C -0.236 4.236 25 H 0.075 0.925 26 H 0.109 0.891 27 H 0.063 0.937 28 H 0.074 0.926 29 H 0.109 0.891 30 H 0.101 0.899 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.218 0.782 34 H 0.125 0.875 35 H 0.159 0.841 36 H 0.180 0.820 37 H 0.151 0.849 38 H 0.093 0.907 39 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -9.242 9.513 -19.990 23.990 hybrid contribution -0.724 -1.194 1.573 2.104 sum -9.967 8.319 -18.417 22.532 Atomic orbital electron populations 1.22890 0.79578 1.03579 1.00885 1.87869 1.21286 1.28259 1.95603 1.22930 0.91899 0.85147 1.02261 1.20905 0.92024 0.97491 0.82039 0.88237 1.22140 1.00675 1.00662 0.98054 1.48271 1.13499 1.50864 1.26568 1.73975 1.00823 1.17767 1.10277 1.23782 0.96381 1.01127 0.94497 1.18200 0.92231 0.96792 0.93169 1.21218 0.94758 1.00229 1.01428 1.21096 0.95958 0.98213 0.93512 1.20677 1.01079 1.00063 0.98444 1.19471 0.93495 0.93143 0.86789 1.83535 1.40449 1.58697 1.32506 1.20702 0.98157 1.26556 1.01952 0.90123 1.25268 1.02734 0.95367 0.95532 1.69733 1.37167 1.33702 1.16060 0.85216 0.78678 0.78359 0.78474 1.19101 1.19450 1.18510 1.21231 0.97964 1.05753 0.98692 0.92490 0.89110 0.93714 0.92648 0.89149 0.89876 0.93771 0.93021 0.78201 0.87455 0.84138 0.81999 0.84880 0.90684 0.86985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 113.37 1.25 1.56 16 2 O -0.41 -7.14 9.54 -148.98 -1.42 -8.56 16 3 C 0.06 0.79 5.71 71.98 0.41 1.20 16 4 C 0.18 3.32 3.65 44.99 0.16 3.48 16 5 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 6 C -0.16 -2.82 9.32 71.98 0.67 -2.15 16 7 N -0.65 -16.25 6.10 -169.39 -1.03 -17.28 16 8 N -0.22 -6.59 10.61 -52.16 -0.55 -7.14 16 9 C 0.05 1.76 10.75 87.45 0.94 2.70 16 10 C 0.00 -0.06 5.87 -20.16 -0.12 -0.18 16 11 C -0.16 -5.03 9.58 22.57 0.22 -4.81 16 12 C -0.07 -2.14 10.02 22.21 0.22 -1.92 16 13 C -0.18 -6.88 9.98 22.45 0.22 -6.66 16 14 C 0.12 5.61 6.64 22.54 0.15 5.76 16 15 O -0.24 -13.25 8.58 -22.89 -0.20 -13.44 16 16 C -0.40 -23.48 9.94 67.92 0.68 -22.80 16 17 H 0.08 4.99 5.43 -2.91 -0.02 4.98 16 18 C 0.01 0.52 5.49 84.83 0.47 0.99 16 19 N -0.93 -55.64 13.96 21.61 0.30 -55.33 16 20 Si 0.97 45.58 28.62 68.60 1.96 47.54 16 21 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 22 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 23 H -0.26 -12.17 7.11 99.48 0.71 -11.46 16 24 C -0.21 -9.61 8.90 22.67 0.20 -9.41 16 25 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 26 H 0.09 0.94 8.14 -2.38 -0.02 0.92 16 27 H 0.04 0.48 8.14 -2.39 -0.02 0.46 16 28 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.04 0.92 8.14 -2.39 -0.02 0.91 16 32 H 0.05 1.06 7.56 -2.39 -0.02 1.04 16 33 H 0.38 9.45 8.36 -213.33 -1.78 7.67 16 34 H 0.11 3.48 8.02 -2.91 -0.02 3.46 16 35 H 0.14 3.95 7.55 -2.91 -0.02 3.92 16 36 H 0.16 3.51 8.06 -2.91 -0.02 3.49 16 37 H 0.13 4.53 8.06 -2.91 -0.02 4.51 16 38 H 0.28 15.65 8.31 -92.71 -0.77 14.88 16 39 H 0.11 5.47 5.63 -2.91 -0.02 5.45 16 Total: -1.00 -67.71 337.72 3.80 -63.91 By element: Atomic # 1 Polarization: 23.27 SS G_CDS: -0.73 Total: 22.54 kcal Atomic # 6 Polarization: -37.70 SS G_CDS: 5.47 Total: -32.23 kcal Atomic # 7 Polarization: -78.47 SS G_CDS: -1.28 Total: -79.75 kcal Atomic # 8 Polarization: -20.38 SS G_CDS: -1.62 Total: -22.00 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 1.96 Total: 47.54 kcal Total: -67.71 3.80 -63.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777903930.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.932 kcal (2) G-P(sol) polarization free energy of solvation -67.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds