Wall clock time and date at job start Tue Mar 31 2020 00:15:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 115.55336 * 2 1 4 4 C 1.53002 * 117.49883 * 145.70280 * 2 1 3 5 5 C 1.52999 * 117.49874 * 214.32502 * 2 1 3 6 6 H 1.08995 * 117.50075 * 0.02562 * 5 2 1 7 7 C 1.50704 * 117.49872 * 145.02181 * 5 2 1 8 8 C 1.34515 * 125.79099 * 239.99829 * 7 5 2 9 9 C 1.41385 * 106.83992 * 179.97438 * 8 7 5 10 10 C 1.34512 * 106.83926 * 0.23220 * 9 8 7 11 11 C 1.50702 * 125.78762 * 179.76997 * 10 9 8 12 12 N 1.46502 * 109.47150 * 90.02179 * 11 10 9 13 13 C 1.34778 * 120.00069 * 180.02562 * 12 11 10 14 14 O 1.21588 * 119.99576 * 359.97438 * 13 12 11 15 15 N 1.34771 * 120.00104 * 180.02562 * 13 12 11 16 16 C 1.46494 * 120.00042 * 180.02562 * 15 13 12 17 17 C 1.50703 * 109.47226 * 179.97438 * 16 15 13 18 18 H 1.07999 * 120.00058 * 359.97438 * 17 16 15 19 19 C 1.37876 * 120.00115 * 179.97438 * 17 16 15 20 20 N 1.31516 * 119.99989 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00155 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47179 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47301 * 119.99985 * 21 19 17 24 24 H 1.48497 * 109.47540 * 240.00067 * 21 19 17 25 25 O 1.34305 * 108.42433 * 359.63135 * 10 9 8 26 26 H 1.08999 * 109.46929 * 205.67385 * 1 2 3 27 27 H 1.08994 * 109.47239 * 325.67592 * 1 2 3 28 28 H 1.09001 * 109.47067 * 85.67305 * 1 2 3 29 29 H 1.08998 * 117.49742 * 0.02562 * 4 2 1 30 30 H 1.08995 * 117.50199 * 214.97752 * 4 2 1 31 31 H 1.08002 * 126.57938 * 359.94618 * 8 7 5 32 32 H 1.08002 * 126.57514 * 179.97438 * 9 8 7 33 33 H 1.08999 * 109.47283 * 210.02243 * 11 10 9 34 34 H 1.09005 * 109.47007 * 330.02445 * 11 10 9 35 35 H 0.97003 * 119.99826 * 359.97438 * 12 11 10 36 36 H 0.97003 * 119.99792 * 359.97438 * 15 13 12 37 37 H 1.09004 * 109.47114 * 299.99338 * 16 15 13 38 38 H 1.09000 * 109.47480 * 59.99736 * 16 15 13 39 39 H 0.97001 * 120.00143 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2365 -1.1212 0.7647 5 6 2.2365 -1.1208 -0.7653 6 1 1.6113 -1.8579 -1.2691 7 6 3.5293 -0.7807 -1.4610 8 6 3.7641 -0.8879 -2.7812 9 6 5.0962 -0.4658 -2.9959 10 6 5.5975 -0.1309 -1.7934 11 6 6.9930 0.3731 -1.5297 12 7 7.0103 1.8349 -1.6241 13 6 8.1599 2.5096 -1.4247 14 8 9.1826 1.9049 -1.1661 15 7 8.1757 3.8544 -1.5111 16 6 9.4254 4.5877 -1.2950 17 6 9.1735 6.0656 -1.4476 18 1 8.1818 6.4230 -1.6825 19 6 10.2091 6.9616 -1.2873 20 7 11.4167 6.5265 -1.0007 21 14 9.8971 8.7936 -1.4772 22 1 8.4649 9.0212 -1.7970 23 1 10.2369 9.4877 -0.2091 24 1 10.7411 9.3283 -2.5757 25 8 4.6424 -0.3189 -0.8681 26 1 -0.3633 -0.9262 0.4452 27 1 -0.3633 0.8487 0.5794 28 1 -0.3633 0.0775 -1.0247 29 1 1.6112 -1.8590 1.2675 30 1 3.1715 -0.8756 1.2681 31 1 3.0685 -1.2309 -3.5328 32 1 5.6135 -0.4246 -3.9431 33 1 7.3062 0.0698 -0.5306 34 1 7.6765 -0.0468 -2.2678 35 1 6.1945 2.3173 -1.8307 36 1 7.3597 4.3368 -1.7170 37 1 9.7972 4.3840 -0.2907 38 1 10.1658 4.2680 -2.0283 39 1 12.1454 7.1569 -0.8883 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787358592.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:15:02 Heat of formation + Delta-G solvation = -0.546325 kcal Electronic energy + Delta-G solvation = -20335.117696 eV Core-core repulsion = 17052.049753 eV Total energy + Delta-G solvation = -3283.067943 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.81738 -39.17049 -38.09327 -34.88920 -33.99520 -33.13146 -32.30888 -30.65115 -28.85808 -27.23846 -25.68709 -22.81681 -22.22824 -21.93192 -21.09602 -20.24046 -20.08221 -18.27374 -17.19187 -16.39611 -16.09594 -15.53755 -15.27049 -14.84580 -14.70131 -14.48934 -13.92084 -13.61468 -13.45439 -13.23089 -13.04546 -12.95132 -12.60845 -12.22929 -12.13844 -11.94762 -11.85070 -11.65242 -10.95595 -10.91612 -10.89580 -10.46527 -10.29379 -10.03154 -9.49480 -9.33845 -8.83694 -8.68891 -8.42604 -7.76095 -6.13985 -4.20354 1.37616 2.33291 2.59709 3.25286 3.31905 3.35042 3.45254 3.54535 3.92856 4.06687 4.34677 4.37180 4.44371 4.56338 4.88201 4.89681 4.95613 5.12189 5.22188 5.22816 5.35515 5.38523 5.39935 5.57352 5.61390 5.64975 5.71903 5.85520 5.89392 5.92830 6.33369 6.73880 7.01410 7.10766 7.51747 7.56170 7.58650 7.90675 8.04891 8.77617 8.93455 9.32261 9.48595 10.96337 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.022868 B = 0.002858 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.108958 B = 9793.159525 C =10522.836016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.139 4.139 3 H 0.108 0.892 4 C -0.165 4.165 5 C -0.082 4.082 6 H 0.134 0.866 7 C 0.024 3.976 8 C -0.207 4.207 9 C -0.184 4.184 10 C -0.027 4.027 11 C 0.224 3.776 12 N -0.756 5.756 13 C 0.695 3.305 14 O -0.600 6.600 15 N -0.727 5.727 16 C 0.266 3.734 17 C -0.541 4.541 18 H 0.063 0.937 19 C 0.063 3.937 20 N -0.885 5.885 21 Si 0.904 3.096 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.282 1.282 25 O -0.167 6.167 26 H 0.058 0.942 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.103 0.897 30 H 0.102 0.898 31 H 0.148 0.852 32 H 0.152 0.848 33 H 0.079 0.921 34 H 0.096 0.904 35 H 0.394 0.606 36 H 0.387 0.613 37 H 0.025 0.975 38 H 0.025 0.975 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.908 -15.456 -1.068 26.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.158 4.158 3 H 0.127 0.873 4 C -0.202 4.202 5 C -0.100 4.100 6 H 0.151 0.849 7 C -0.027 4.027 8 C -0.226 4.226 9 C -0.204 4.204 10 C -0.077 4.077 11 C 0.100 3.900 12 N -0.415 5.415 13 C 0.395 3.605 14 O -0.479 6.479 15 N -0.379 5.379 16 C 0.145 3.855 17 C -0.579 4.579 18 H 0.081 0.919 19 C -0.141 4.141 20 N -0.523 5.523 21 Si 0.731 3.269 22 H -0.197 1.197 23 H -0.208 1.208 24 H -0.208 1.208 25 O -0.064 6.064 26 H 0.077 0.923 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.121 0.879 30 H 0.120 0.880 31 H 0.166 0.834 32 H 0.169 0.831 33 H 0.098 0.902 34 H 0.114 0.886 35 H 0.227 0.773 36 H 0.219 0.781 37 H 0.043 0.957 38 H 0.043 0.957 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -20.662 -15.861 -0.462 26.052 hybrid contribution -0.815 1.366 -0.572 1.690 sum -21.477 -14.496 -1.034 25.932 Atomic orbital electron populations 1.21390 0.92080 1.02334 1.02223 1.22528 0.95535 0.94873 1.02824 0.87339 1.23204 1.03267 1.01347 0.92405 1.20594 0.91902 1.03241 0.94267 0.84867 1.21397 0.87153 1.02487 0.91677 1.21485 0.97516 1.08278 0.95322 1.21676 0.95370 1.05025 0.98364 1.22422 0.91636 1.06381 0.87266 1.19313 0.86582 0.80402 1.03711 1.45204 1.11185 1.05863 1.79224 1.16090 0.82981 0.82757 0.78700 1.90882 1.32146 1.68248 1.56618 1.45716 1.14792 1.03490 1.73944 1.19007 0.79738 0.89580 0.97175 1.21265 0.95869 0.90683 1.50117 0.91896 1.24949 0.94832 0.99499 0.94795 1.69991 1.00408 1.34923 1.46973 0.86355 0.78339 0.84348 0.77810 1.19669 1.20822 1.20812 1.83953 1.19530 1.65205 1.37708 0.92293 0.91648 0.91885 0.87888 0.87975 0.83420 0.83061 0.90234 0.88628 0.77266 0.78094 0.95659 0.95651 0.92520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.68 10.19 37.16 0.38 -0.30 16 2 C -0.14 -1.04 6.11 -90.62 -0.55 -1.60 16 3 H 0.11 0.95 8.14 -51.93 -0.42 0.52 16 4 C -0.17 -1.24 9.81 -26.73 -0.26 -1.51 16 5 C -0.08 -0.66 5.96 -91.77 -0.55 -1.20 16 6 H 0.13 0.80 8.14 -51.93 -0.42 0.38 16 7 C 0.02 0.25 6.80 -35.62 -0.24 0.01 16 8 C -0.21 -2.12 10.81 -39.70 -0.43 -2.55 16 9 C -0.18 -2.04 10.81 -39.70 -0.43 -2.47 16 10 C -0.03 -0.33 6.69 -35.62 -0.24 -0.57 16 11 C 0.22 3.10 6.20 -5.19 -0.03 3.06 16 12 N -0.76 -11.84 5.55 -66.41 -0.37 -12.21 16 13 C 0.69 14.61 8.57 -86.92 -0.74 13.86 16 14 O -0.60 -15.10 16.34 5.29 0.09 -15.01 16 15 N -0.73 -15.87 5.55 -66.42 -0.37 -16.24 16 16 C 0.27 7.21 5.43 -5.20 -0.03 7.18 16 17 C -0.54 -14.87 9.28 -34.44 -0.32 -15.19 16 18 H 0.06 1.62 7.60 -52.49 -0.40 1.22 16 19 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 20 N -0.89 -26.33 13.29 55.43 0.74 -25.60 16 21 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 22 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 O -0.17 -2.13 10.36 5.70 0.06 -2.07 16 26 H 0.06 0.27 7.90 -51.93 -0.41 -0.14 16 27 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.10 0.59 8.05 -51.93 -0.42 0.17 16 30 H 0.10 0.90 7.96 -51.93 -0.41 0.49 16 31 H 0.15 1.17 8.06 -52.49 -0.42 0.75 16 32 H 0.15 1.45 8.06 -52.49 -0.42 1.03 16 33 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 35 H 0.39 5.25 8.48 -40.82 -0.35 4.91 16 36 H 0.39 7.25 8.34 -40.82 -0.34 6.91 16 37 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 341.94 15.07 5.15 5.15 Total: -1.00 -33.23 341.94 -8.96 -42.19 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -5.69 Total: 7.39 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: -3.54 Total: 0.39 kcal Atomic # 7 Polarization: -54.04 SS G_CDS: 0.00 Total: -54.05 kcal Atomic # 8 Polarization: -17.22 SS G_CDS: 0.15 Total: -17.08 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.23 -8.96 -42.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787358592.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.640 kcal (2) G-P(sol) polarization free energy of solvation -33.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds