Wall clock time and date at job start Tue Mar 31 2020 00:15:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 115.55336 * 2 1 4 4 C 1.53002 * 117.49883 * 145.70280 * 2 1 3 5 5 C 1.52999 * 117.49874 * 214.32502 * 2 1 3 6 6 H 1.08995 * 117.50075 * 0.02562 * 5 2 1 7 7 C 1.50704 * 117.49872 * 145.02181 * 5 2 1 8 8 C 1.34515 * 125.79099 * 239.99829 * 7 5 2 9 9 C 1.41385 * 106.83992 * 179.97438 * 8 7 5 10 10 C 1.34512 * 106.83926 * 0.23220 * 9 8 7 11 11 C 1.50702 * 125.78762 * 179.76997 * 10 9 8 12 12 N 1.46502 * 109.47150 * 90.02179 * 11 10 9 13 13 C 1.34778 * 120.00069 * 180.02562 * 12 11 10 14 14 O 1.21588 * 119.99576 * 359.97438 * 13 12 11 15 15 N 1.34771 * 120.00104 * 180.02562 * 13 12 11 16 16 C 1.46494 * 120.00042 * 180.02562 * 15 13 12 17 17 C 1.50703 * 109.47226 * 179.97438 * 16 15 13 18 18 H 1.07999 * 120.00058 * 359.97438 * 17 16 15 19 19 C 1.37876 * 120.00115 * 179.97438 * 17 16 15 20 20 N 1.31516 * 119.99989 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00155 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47179 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47301 * 119.99985 * 21 19 17 24 24 H 1.48497 * 109.47540 * 240.00067 * 21 19 17 25 25 O 1.34305 * 108.42433 * 359.63135 * 10 9 8 26 26 H 1.08999 * 109.46929 * 205.67385 * 1 2 3 27 27 H 1.08994 * 109.47239 * 325.67592 * 1 2 3 28 28 H 1.09001 * 109.47067 * 85.67305 * 1 2 3 29 29 H 1.08998 * 117.49742 * 0.02562 * 4 2 1 30 30 H 1.08995 * 117.50199 * 214.97752 * 4 2 1 31 31 H 1.08002 * 126.57938 * 359.94618 * 8 7 5 32 32 H 1.08002 * 126.57514 * 179.97438 * 9 8 7 33 33 H 1.08999 * 109.47283 * 210.02243 * 11 10 9 34 34 H 1.09005 * 109.47007 * 330.02445 * 11 10 9 35 35 H 0.97003 * 119.99826 * 359.97438 * 12 11 10 36 36 H 0.97003 * 119.99792 * 359.97438 * 15 13 12 37 37 H 1.09004 * 109.47114 * 299.99338 * 16 15 13 38 38 H 1.09000 * 109.47480 * 59.99736 * 16 15 13 39 39 H 0.97001 * 120.00143 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2365 -1.1212 0.7647 5 6 2.2365 -1.1208 -0.7653 6 1 1.6113 -1.8579 -1.2691 7 6 3.5293 -0.7807 -1.4610 8 6 3.7641 -0.8879 -2.7812 9 6 5.0962 -0.4658 -2.9959 10 6 5.5975 -0.1309 -1.7934 11 6 6.9930 0.3731 -1.5297 12 7 7.0103 1.8349 -1.6241 13 6 8.1599 2.5096 -1.4247 14 8 9.1826 1.9049 -1.1661 15 7 8.1757 3.8544 -1.5111 16 6 9.4254 4.5877 -1.2950 17 6 9.1735 6.0656 -1.4476 18 1 8.1818 6.4230 -1.6825 19 6 10.2091 6.9616 -1.2873 20 7 11.4167 6.5265 -1.0007 21 14 9.8971 8.7936 -1.4772 22 1 8.4649 9.0212 -1.7970 23 1 10.2369 9.4877 -0.2091 24 1 10.7411 9.3283 -2.5757 25 8 4.6424 -0.3189 -0.8681 26 1 -0.3633 -0.9262 0.4452 27 1 -0.3633 0.8487 0.5794 28 1 -0.3633 0.0775 -1.0247 29 1 1.6112 -1.8590 1.2675 30 1 3.1715 -0.8756 1.2681 31 1 3.0685 -1.2309 -3.5328 32 1 5.6135 -0.4246 -3.9431 33 1 7.3062 0.0698 -0.5306 34 1 7.6765 -0.0468 -2.2678 35 1 6.1945 2.3173 -1.8307 36 1 7.3597 4.3368 -1.7170 37 1 9.7972 4.3840 -0.2907 38 1 10.1658 4.2680 -2.0283 39 1 12.1454 7.1569 -0.8883 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787358592.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:15:01 Heat of formation + Delta-G solvation = -22.883168 kcal Electronic energy + Delta-G solvation = -20336.086294 eV Core-core repulsion = 17052.049753 eV Total energy + Delta-G solvation = -3284.036541 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.69579 -40.88424 -38.70159 -36.47895 -35.83689 -34.37441 -33.99743 -31.68525 -29.73800 -28.88245 -26.87906 -24.59306 -23.24177 -22.80735 -21.94839 -21.68948 -20.92751 -19.95679 -18.40091 -17.81529 -17.47253 -16.95255 -16.68605 -16.36956 -16.00613 -15.47585 -15.03163 -14.93833 -14.69174 -14.46310 -14.04340 -13.92784 -13.82896 -13.77294 -13.26250 -12.96584 -12.86519 -12.79707 -12.73956 -12.38584 -12.21869 -11.59046 -11.45018 -11.38073 -11.03372 -10.82921 -10.81771 -10.37621 -9.64903 -9.28101 -8.28221 -6.44477 0.46319 1.42949 1.45389 1.46426 1.58848 1.71677 2.08486 2.19081 2.40685 2.85958 3.06834 3.35115 3.52625 3.63734 3.85898 3.87494 4.07646 4.15134 4.37835 4.40489 4.48206 4.69422 4.82208 4.88114 4.95356 4.99663 5.06359 5.07876 5.11819 5.19882 5.27472 5.34386 5.40095 5.48279 5.53537 5.64649 5.84714 6.14492 6.18221 6.67064 7.21748 7.26307 7.65674 8.84368 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.022868 B = 0.002858 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.108958 B = 9793.159525 C =10522.836016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.138 4.138 3 H 0.090 0.910 4 C -0.167 4.167 5 C -0.086 4.086 6 H 0.159 0.841 7 C 0.018 3.982 8 C -0.211 4.211 9 C -0.175 4.175 10 C -0.049 4.049 11 C 0.226 3.774 12 N -0.732 5.732 13 C 0.695 3.305 14 O -0.644 6.644 15 N -0.722 5.722 16 C 0.284 3.716 17 C -0.554 4.554 18 H 0.083 0.917 19 C 0.003 3.997 20 N -0.930 5.930 21 Si 0.986 3.014 22 H -0.254 1.254 23 H -0.279 1.279 24 H -0.278 1.278 25 O -0.187 6.187 26 H 0.071 0.929 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.124 0.876 30 H 0.082 0.918 31 H 0.174 0.826 32 H 0.167 0.833 33 H 0.069 0.931 34 H 0.101 0.899 35 H 0.409 0.591 36 H 0.404 0.596 37 H -0.013 1.013 38 H -0.011 1.011 39 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.957 -15.172 -2.003 29.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.157 4.157 3 H 0.108 0.892 4 C -0.204 4.204 5 C -0.104 4.104 6 H 0.176 0.824 7 C -0.032 4.032 8 C -0.230 4.230 9 C -0.195 4.195 10 C -0.098 4.098 11 C 0.103 3.897 12 N -0.390 5.390 13 C 0.395 3.605 14 O -0.527 6.527 15 N -0.375 5.375 16 C 0.161 3.839 17 C -0.592 4.592 18 H 0.101 0.899 19 C -0.196 4.196 20 N -0.569 5.569 21 Si 0.810 3.190 22 H -0.177 1.177 23 H -0.205 1.205 24 H -0.204 1.204 25 O -0.084 6.084 26 H 0.090 0.910 27 H 0.085 0.915 28 H 0.088 0.912 29 H 0.142 0.858 30 H 0.101 0.899 31 H 0.191 0.809 32 H 0.184 0.816 33 H 0.087 0.913 34 H 0.119 0.881 35 H 0.245 0.755 36 H 0.240 0.760 37 H 0.005 0.995 38 H 0.007 0.993 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -23.798 -15.601 -1.415 28.491 hybrid contribution 0.078 1.161 -0.267 1.193 sum -23.720 -14.440 -1.682 27.820 Atomic orbital electron populations 1.21395 0.90281 1.03121 1.02851 1.22547 0.96793 0.93881 1.02454 0.89166 1.23247 1.02871 1.02020 0.92278 1.20853 0.91014 1.04037 0.94484 0.82361 1.22047 0.87294 1.01505 0.92361 1.21821 0.97486 1.08016 0.95679 1.21959 0.95803 1.03374 0.98318 1.22090 0.91217 1.08643 0.87883 1.19306 0.88234 0.78803 1.03370 1.44984 1.09930 1.06769 1.77357 1.16197 0.83687 0.82378 0.78233 1.90851 1.34322 1.69036 1.58468 1.45312 1.13916 1.03940 1.74353 1.18453 0.81016 0.90621 0.93816 1.21623 0.96915 0.90613 1.50054 0.89910 1.26063 0.94330 1.05253 0.93965 1.70147 1.01708 1.37102 1.47945 0.85087 0.79104 0.77101 0.77755 1.17729 1.20459 1.20368 1.83934 1.20266 1.65839 1.38389 0.90995 0.91512 0.91212 0.85751 0.89923 0.80855 0.81585 0.91276 0.88113 0.75526 0.76029 0.99519 0.99333 0.92212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.03 10.19 71.98 0.73 -0.30 16 2 C -0.14 -1.86 6.11 -10.79 -0.07 -1.93 16 3 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 4 C -0.17 -2.29 9.81 30.60 0.30 -1.99 16 5 C -0.09 -1.20 5.96 -11.54 -0.07 -1.27 16 6 H 0.16 1.38 8.14 -2.39 -0.02 1.36 16 7 C 0.02 0.36 6.80 24.83 0.17 0.53 16 8 C -0.21 -3.82 10.81 22.19 0.24 -3.58 16 9 C -0.17 -3.56 10.81 22.19 0.24 -3.32 16 10 C -0.05 -1.17 6.69 24.83 0.17 -1.01 16 11 C 0.23 6.28 6.20 85.63 0.53 6.81 16 12 N -0.73 -22.79 5.55 -482.29 -2.68 -25.47 16 13 C 0.70 29.81 8.57 179.06 1.53 31.34 16 14 O -0.64 -33.69 16.34 -3.99 -0.07 -33.76 16 15 N -0.72 -31.96 5.55 -482.31 -2.68 -34.64 16 16 C 0.28 15.99 5.43 85.64 0.46 16.46 16 17 C -0.55 -30.58 9.28 25.60 0.24 -30.34 16 18 H 0.08 4.14 7.60 -2.91 -0.02 4.12 16 19 C 0.00 0.19 5.46 84.65 0.46 0.65 16 20 N -0.93 -56.60 13.29 21.45 0.28 -56.31 16 21 Si 0.99 42.68 29.54 68.60 2.03 44.70 16 22 H -0.25 -10.15 7.11 99.48 0.71 -9.45 16 23 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 24 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 25 O -0.19 -4.67 10.36 -2.52 -0.03 -4.69 16 26 H 0.07 0.45 7.90 -2.39 -0.02 0.43 16 27 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.12 1.14 8.05 -2.39 -0.02 1.12 16 30 H 0.08 1.46 7.96 -2.39 -0.02 1.44 16 31 H 0.17 2.15 8.06 -2.91 -0.02 2.13 16 32 H 0.17 2.81 8.06 -2.91 -0.02 2.78 16 33 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.10 2.71 8.14 -2.38 -0.02 2.69 16 35 H 0.41 10.47 8.48 -92.71 -0.79 9.68 16 36 H 0.40 14.88 8.34 -92.71 -0.77 14.11 16 37 H -0.01 -0.83 8.14 -2.38 -0.02 -0.85 16 38 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 39 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -73.78 341.94 1.32 -72.46 By element: Atomic # 1 Polarization: 26.13 SS G_CDS: -0.49 Total: 25.64 kcal Atomic # 6 Polarization: 7.12 SS G_CDS: 4.94 Total: 12.06 kcal Atomic # 7 Polarization: -111.35 SS G_CDS: -5.07 Total: -116.42 kcal Atomic # 8 Polarization: -38.36 SS G_CDS: -0.09 Total: -38.45 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.70 kcal Total: -73.78 1.32 -72.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787358592.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.577 kcal (2) G-P(sol) polarization free energy of solvation -73.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds