Wall clock time and date at job start Tue Mar 31 2020 00:48:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47000 * 2 1 4 4 C 1.50697 * 109.47477 * 239.99450 * 2 1 3 5 5 H 1.08003 * 119.99645 * 239.99938 * 4 2 1 6 6 C 1.37874 * 120.00083 * 60.00383 * 4 2 1 7 7 N 1.31510 * 119.99813 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00103 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46783 * 89.99694 * 8 6 4 10 10 H 1.48495 * 109.47334 * 209.99479 * 8 6 4 11 11 H 1.48499 * 109.47227 * 329.99896 * 8 6 4 12 12 O 1.45208 * 109.46671 * 119.99197 * 2 1 3 13 13 C 1.34226 * 116.99939 * 269.99967 * 12 2 1 14 14 O 1.20825 * 120.00359 * 0.02562 * 13 12 2 15 15 C 1.50706 * 119.99822 * 179.97438 * 13 12 2 16 16 H 1.09000 * 109.46601 * 300.02524 * 15 13 12 17 17 C 1.53112 * 109.46202 * 60.00622 * 15 13 12 18 18 C 1.53366 * 109.50847 * 190.29178 * 17 15 13 19 19 C 1.50831 * 108.37943 * 310.05942 * 18 17 15 20 20 C 1.39298 * 127.90087 * 196.52857 * 19 18 17 21 21 N 1.31074 * 108.07955 * 179.97438 * 20 19 18 22 22 N 1.40288 * 108.27184 * 359.97438 * 21 20 19 23 23 C 1.46500 * 126.09499 * 180.02562 * 22 21 20 24 24 C 1.34329 * 107.81899 * 0.07516 * 22 21 20 25 25 C 1.50817 * 128.03640 * 179.76956 * 24 22 21 26 26 H 1.08996 * 109.47551 * 300.00812 * 1 2 3 27 27 H 1.08999 * 109.46721 * 60.00751 * 1 2 3 28 28 H 1.09002 * 109.47000 * 180.02562 * 1 2 3 29 29 H 0.97000 * 120.00339 * 180.02562 * 7 6 4 30 30 H 1.08999 * 109.46256 * 310.30097 * 17 15 13 31 31 H 1.09002 * 109.46856 * 70.28845 * 17 15 13 32 32 H 1.09003 * 109.67961 * 69.77475 * 18 17 15 33 33 H 1.08993 * 109.68209 * 190.29660 * 18 17 15 34 34 H 1.07999 * 125.95953 * 359.89887 * 20 19 18 35 35 H 1.08991 * 109.47291 * 89.97547 * 23 22 21 36 36 H 1.09001 * 109.47385 * 209.98023 * 23 22 21 37 37 H 1.09003 * 109.46998 * 329.97372 * 23 22 21 38 38 H 1.08997 * 109.68563 * 76.93868 * 25 24 22 39 39 H 1.09000 * 109.68264 * 316.37932 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.6534 -1.5886 -1.1311 6 6 1.6995 -0.2395 -2.4827 7 7 0.9430 0.8294 -2.6034 8 14 2.3228 -1.1198 -4.0077 9 1 1.3451 -2.1619 -4.4121 10 1 2.4876 -0.1407 -5.1119 11 1 3.6311 -1.7568 -3.7116 12 8 2.0139 -0.6844 1.1857 13 6 2.2170 0.0643 2.2812 14 8 1.9973 1.2520 2.2505 15 6 2.7180 -0.5769 3.5497 16 1 2.0086 -1.3368 3.8774 17 6 4.0790 -1.2281 3.2891 18 6 4.4711 -2.0943 4.4924 19 6 4.3070 -1.2705 5.7452 20 6 4.8316 -1.5234 7.0105 21 7 4.4481 -0.5583 7.8103 22 7 3.6648 0.3405 7.0709 23 6 3.0368 1.5612 7.5825 24 6 3.5923 -0.1181 5.8104 25 6 2.8622 0.4919 4.6401 26 1 -0.3634 0.5139 0.8898 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 0.7084 1.1606 -3.4845 30 1 4.0185 -1.8515 2.3971 31 1 4.8302 -0.4525 3.1399 32 1 3.8233 -2.9696 4.5413 33 1 5.5093 -2.4110 4.3940 34 1 5.4461 -2.3681 7.2851 35 1 3.7243 2.3991 7.4674 36 1 2.1229 1.7615 7.0232 37 1 2.7959 1.4311 8.6375 38 1 3.4304 1.3377 4.2533 39 1 1.8747 0.8268 4.9577 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000798829648.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:48:19 Heat of formation + Delta-G solvation = -26.897933 kcal Electronic energy + Delta-G solvation = -21640.826726 eV Core-core repulsion = 18356.616091 eV Total energy + Delta-G solvation = -3284.210634 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.62218 -39.69372 -36.61093 -35.52706 -33.74257 -33.26984 -30.34924 -30.10244 -29.25565 -26.69488 -25.35849 -24.52106 -22.53625 -21.37496 -20.96215 -19.54745 -18.68199 -17.28944 -16.63663 -16.41784 -15.80607 -15.34022 -15.01469 -14.49311 -14.33110 -14.20454 -13.67549 -13.51779 -13.17387 -12.95264 -12.83750 -12.50084 -12.16851 -11.99498 -11.84479 -11.50268 -11.24564 -11.07720 -10.87843 -10.81934 -10.70737 -10.54539 -10.39568 -10.29091 -9.61807 -9.52228 -9.32416 -8.92687 -8.50957 -8.25045 -6.20126 -4.27060 1.78472 2.38070 2.73564 2.93853 3.23795 3.29218 3.32659 3.57696 4.30450 4.40125 4.59651 4.67173 4.86450 4.98492 5.01732 5.05835 5.13160 5.21861 5.33391 5.41200 5.46919 5.59400 5.75295 5.84544 5.87532 5.97047 6.23391 6.27948 6.30970 6.61120 6.62089 6.86056 6.88953 6.93646 7.14520 7.58014 7.63191 7.70500 7.91288 8.12057 8.60535 8.86249 9.38593 10.87338 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.034338 B = 0.003777 C = 0.003500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.219763 B = 7412.149255 C = 7998.559060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.215 3.785 3 H 0.046 0.954 4 C -0.521 4.521 5 H 0.069 0.931 6 C 0.062 3.938 7 N -0.890 5.890 8 Si 0.912 3.088 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.271 1.271 12 O -0.352 6.352 13 C 0.458 3.542 14 O -0.523 6.523 15 C -0.074 4.074 16 H 0.108 0.892 17 C -0.112 4.112 18 C -0.036 4.036 19 C -0.242 4.242 20 C 0.054 3.946 21 N -0.306 5.306 22 N -0.368 5.368 23 C 0.099 3.901 24 C 0.091 3.909 25 C -0.040 4.040 26 H 0.015 0.985 27 H 0.099 0.901 28 H 0.037 0.963 29 H 0.266 0.734 30 H 0.089 0.911 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.182 0.818 35 H 0.075 0.925 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.097 0.903 39 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.670 -2.789 16.401 17.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.162 3.838 3 H 0.064 0.936 4 C -0.559 4.559 5 H 0.088 0.912 6 C -0.140 4.140 7 N -0.527 5.527 8 Si 0.738 3.262 9 H -0.204 1.204 10 H -0.210 1.210 11 H -0.196 1.196 12 O -0.268 6.268 13 C 0.301 3.699 14 O -0.414 6.414 15 C -0.094 4.094 16 H 0.126 0.874 17 C -0.150 4.150 18 C -0.075 4.075 19 C -0.253 4.253 20 C -0.130 4.130 21 N -0.128 5.128 22 N -0.150 5.150 23 C -0.042 4.042 24 C -0.037 4.037 25 C -0.079 4.079 26 H 0.034 0.966 27 H 0.118 0.882 28 H 0.056 0.944 29 H 0.076 0.924 30 H 0.108 0.892 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.094 0.906 34 H 0.199 0.801 35 H 0.093 0.907 36 H 0.107 0.893 37 H 0.107 0.893 38 H 0.115 0.885 39 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 4.484 -1.711 17.456 18.104 hybrid contribution 0.072 -0.455 -1.557 1.623 sum 4.555 -2.166 15.899 16.680 Atomic orbital electron populations 1.22166 0.97613 1.00121 1.01381 1.20646 0.91352 0.93929 0.77827 0.93580 1.21025 1.32496 1.13468 0.88864 0.91248 1.24886 0.94937 0.95070 0.99089 1.69894 1.36098 1.22575 1.24183 0.86274 0.79332 0.79134 0.81412 1.20355 1.20997 1.19573 1.86476 1.75516 1.43554 1.21252 1.23159 0.74755 0.85842 0.86169 1.90593 1.49018 1.16978 1.84795 1.20929 0.99916 0.98106 0.90425 0.87421 1.21607 0.94284 0.99896 0.99200 1.19983 1.01705 0.96425 0.89342 1.19980 1.08659 0.99686 0.97009 1.23551 0.99950 0.97996 0.91520 1.77484 1.13037 1.02678 1.19556 1.48160 1.40210 1.20148 1.06465 1.21867 0.97883 0.83009 1.01471 1.20862 0.99999 0.95904 0.86976 1.20142 1.00233 0.97782 0.89746 0.96592 0.88241 0.94404 0.92401 0.89215 0.91172 0.90898 0.90627 0.80113 0.90665 0.89346 0.89349 0.88480 0.89662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.88 9.33 37.16 0.35 -3.53 16 2 C 0.21 5.66 2.56 -27.88 -0.07 5.59 16 3 H 0.05 1.34 7.16 -51.93 -0.37 0.97 16 4 C -0.52 -14.36 8.90 -34.44 -0.31 -14.67 16 5 H 0.07 1.88 7.81 -52.48 -0.41 1.47 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -25.02 11.32 55.43 0.63 -24.39 16 8 Si 0.91 20.80 29.54 -169.99 -5.02 15.78 16 9 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 12 O -0.35 -8.07 9.58 -39.25 -0.38 -8.44 16 13 C 0.46 9.08 7.23 36.01 0.26 9.34 16 14 O -0.52 -11.72 15.04 -18.75 -0.28 -12.01 16 15 C -0.07 -1.07 2.60 -91.52 -0.24 -1.30 16 16 H 0.11 1.41 8.11 -51.93 -0.42 0.99 16 17 C -0.11 -1.46 5.19 -26.48 -0.14 -1.59 16 18 C -0.04 -0.39 6.28 -27.63 -0.17 -0.56 16 19 C -0.24 -2.96 5.91 -105.05 -0.62 -3.59 16 20 C 0.05 0.64 12.00 -17.48 -0.21 0.43 16 21 N -0.31 -4.09 12.59 30.55 0.38 -3.71 16 22 N -0.37 -4.54 4.00 -63.88 -0.26 -4.80 16 23 C 0.10 0.83 11.32 59.85 0.68 1.51 16 24 C 0.09 1.16 6.73 -82.33 -0.55 0.61 16 25 C -0.04 -0.52 4.63 -27.64 -0.13 -0.65 16 26 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.10 2.66 6.07 -51.93 -0.32 2.35 16 28 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 30 H 0.09 1.23 7.87 -51.93 -0.41 0.82 16 31 H 0.07 0.93 8.11 -51.93 -0.42 0.51 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.18 1.52 8.06 -52.49 -0.42 1.10 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.09 0.61 7.57 -51.93 -0.39 0.22 16 37 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.10 1.33 7.79 -51.93 -0.40 0.93 16 39 H 0.08 1.03 7.75 -51.93 -0.40 0.62 16 LS Contribution 324.82 15.07 4.90 4.90 Total: -1.00 -32.10 324.82 -6.92 -39.02 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -5.64 Total: 0.48 kcal Atomic # 6 Polarization: -5.58 SS G_CDS: -1.25 Total: -6.83 kcal Atomic # 7 Polarization: -33.65 SS G_CDS: 0.76 Total: -32.89 kcal Atomic # 8 Polarization: -19.79 SS G_CDS: -0.66 Total: -20.45 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -32.10 -6.92 -39.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798829648.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.121 kcal (2) G-P(sol) polarization free energy of solvation -32.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds