Wall clock time and date at job start Tue Mar 31 2020 00:48:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47000 * 2 1 4 4 C 1.50697 * 109.47477 * 239.99450 * 2 1 3 5 5 H 1.08003 * 119.99645 * 239.99938 * 4 2 1 6 6 C 1.37874 * 120.00083 * 60.00383 * 4 2 1 7 7 N 1.31510 * 119.99813 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00103 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46783 * 89.99694 * 8 6 4 10 10 H 1.48495 * 109.47334 * 209.99479 * 8 6 4 11 11 H 1.48499 * 109.47227 * 329.99896 * 8 6 4 12 12 O 1.45208 * 109.46671 * 119.99197 * 2 1 3 13 13 C 1.34226 * 116.99939 * 269.99967 * 12 2 1 14 14 O 1.20825 * 120.00359 * 0.02562 * 13 12 2 15 15 C 1.50706 * 119.99822 * 179.97438 * 13 12 2 16 16 H 1.09000 * 109.46601 * 300.02524 * 15 13 12 17 17 C 1.53112 * 109.46202 * 60.00622 * 15 13 12 18 18 C 1.53366 * 109.50847 * 190.29178 * 17 15 13 19 19 C 1.50831 * 108.37943 * 310.05942 * 18 17 15 20 20 C 1.39298 * 127.90087 * 196.52857 * 19 18 17 21 21 N 1.31074 * 108.07955 * 179.97438 * 20 19 18 22 22 N 1.40288 * 108.27184 * 359.97438 * 21 20 19 23 23 C 1.46500 * 126.09499 * 180.02562 * 22 21 20 24 24 C 1.34329 * 107.81899 * 0.07516 * 22 21 20 25 25 C 1.50817 * 128.03640 * 179.76956 * 24 22 21 26 26 H 1.08996 * 109.47551 * 300.00812 * 1 2 3 27 27 H 1.08999 * 109.46721 * 60.00751 * 1 2 3 28 28 H 1.09002 * 109.47000 * 180.02562 * 1 2 3 29 29 H 0.97000 * 120.00339 * 180.02562 * 7 6 4 30 30 H 1.08999 * 109.46256 * 310.30097 * 17 15 13 31 31 H 1.09002 * 109.46856 * 70.28845 * 17 15 13 32 32 H 1.09003 * 109.67961 * 69.77475 * 18 17 15 33 33 H 1.08993 * 109.68209 * 190.29660 * 18 17 15 34 34 H 1.07999 * 125.95953 * 359.89887 * 20 19 18 35 35 H 1.08991 * 109.47291 * 89.97547 * 23 22 21 36 36 H 1.09001 * 109.47385 * 209.98023 * 23 22 21 37 37 H 1.09003 * 109.46998 * 329.97372 * 23 22 21 38 38 H 1.08997 * 109.68563 * 76.93868 * 25 24 22 39 39 H 1.09000 * 109.68264 * 316.37932 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.6534 -1.5886 -1.1311 6 6 1.6995 -0.2395 -2.4827 7 7 0.9430 0.8294 -2.6034 8 14 2.3228 -1.1198 -4.0077 9 1 1.3451 -2.1619 -4.4121 10 1 2.4876 -0.1407 -5.1119 11 1 3.6311 -1.7568 -3.7116 12 8 2.0139 -0.6844 1.1857 13 6 2.2170 0.0643 2.2812 14 8 1.9973 1.2520 2.2505 15 6 2.7180 -0.5769 3.5497 16 1 2.0086 -1.3368 3.8774 17 6 4.0790 -1.2281 3.2891 18 6 4.4711 -2.0943 4.4924 19 6 4.3070 -1.2705 5.7452 20 6 4.8316 -1.5234 7.0105 21 7 4.4481 -0.5583 7.8103 22 7 3.6648 0.3405 7.0709 23 6 3.0368 1.5612 7.5825 24 6 3.5923 -0.1181 5.8104 25 6 2.8622 0.4919 4.6401 26 1 -0.3634 0.5139 0.8898 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 0.7084 1.1606 -3.4845 30 1 4.0185 -1.8515 2.3971 31 1 4.8302 -0.4525 3.1399 32 1 3.8233 -2.9696 4.5413 33 1 5.5093 -2.4110 4.3940 34 1 5.4461 -2.3681 7.2851 35 1 3.7243 2.3991 7.4674 36 1 2.1229 1.7615 7.0232 37 1 2.7959 1.4311 8.6375 38 1 3.4304 1.3377 4.2533 39 1 1.8747 0.8268 4.9577 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000798829648.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:48:18 Heat of formation + Delta-G solvation = -45.092667 kcal Electronic energy + Delta-G solvation = -21641.615708 eV Core-core repulsion = 18356.616091 eV Total energy + Delta-G solvation = -3284.999617 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.56810 -41.32895 -38.03516 -37.05333 -35.30185 -34.60635 -31.86097 -31.22609 -30.65491 -27.49702 -27.44749 -25.82048 -23.65343 -23.00819 -21.88255 -21.16792 -19.71141 -18.87278 -18.47535 -17.64830 -17.21545 -16.70056 -16.58197 -16.12722 -15.38632 -15.09029 -14.92077 -14.74019 -14.45132 -14.18174 -13.90930 -13.75010 -13.70194 -13.22371 -13.17326 -13.02793 -12.81073 -12.78500 -12.62503 -12.38589 -12.14871 -11.91245 -11.77263 -11.56341 -11.47680 -11.16203 -10.96651 -10.57687 -10.23157 -9.15509 -8.27159 -6.43640 0.86017 1.32390 1.43888 1.45795 1.53096 1.57868 1.84907 2.03419 2.42908 3.03923 3.43599 3.57584 3.72799 3.77225 3.95849 4.16853 4.32260 4.32776 4.35231 4.46254 4.51658 4.56912 4.61468 4.65472 4.79233 4.85147 4.87636 4.94209 5.06179 5.18261 5.22890 5.30283 5.38833 5.50921 5.65002 5.77464 5.93819 6.06860 6.10985 6.61750 6.73780 6.97184 7.28386 8.80509 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.034338 B = 0.003777 C = 0.003500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.219763 B = 7412.149255 C = 7998.559060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.217 3.783 3 H 0.008 0.992 4 C -0.546 4.546 5 H 0.070 0.930 6 C 0.016 3.984 7 N -0.918 5.918 8 Si 0.982 3.018 9 H -0.268 1.268 10 H -0.280 1.280 11 H -0.264 1.264 12 O -0.357 6.357 13 C 0.454 3.546 14 O -0.552 6.552 15 C -0.062 4.062 16 H 0.128 0.872 17 C -0.110 4.110 18 C -0.027 4.027 19 C -0.249 4.249 20 C 0.054 3.946 21 N -0.331 5.331 22 N -0.374 5.374 23 C 0.090 3.910 24 C 0.078 3.922 25 C -0.031 4.031 26 H 0.024 0.976 27 H 0.080 0.920 28 H 0.046 0.954 29 H 0.270 0.730 30 H 0.082 0.918 31 H 0.062 0.938 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.211 0.789 35 H 0.084 0.916 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.085 0.915 39 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.365 -4.379 16.976 18.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.164 3.836 3 H 0.025 0.975 4 C -0.584 4.584 5 H 0.088 0.912 6 C -0.184 4.184 7 N -0.556 5.556 8 Si 0.805 3.195 9 H -0.193 1.193 10 H -0.205 1.205 11 H -0.188 1.188 12 O -0.273 6.273 13 C 0.299 3.701 14 O -0.444 6.444 15 C -0.082 4.082 16 H 0.146 0.854 17 C -0.148 4.148 18 C -0.065 4.065 19 C -0.261 4.261 20 C -0.130 4.130 21 N -0.153 5.153 22 N -0.156 5.156 23 C -0.051 4.051 24 C -0.051 4.051 25 C -0.070 4.070 26 H 0.043 0.957 27 H 0.098 0.902 28 H 0.065 0.935 29 H 0.079 0.921 30 H 0.101 0.899 31 H 0.081 0.919 32 H 0.106 0.894 33 H 0.113 0.887 34 H 0.228 0.772 35 H 0.102 0.898 36 H 0.119 0.881 37 H 0.118 0.882 38 H 0.103 0.897 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 5.178 -3.297 18.063 19.078 hybrid contribution -0.142 0.111 -1.661 1.671 sum 5.037 -3.186 16.402 17.451 Atomic orbital electron populations 1.21993 0.96856 1.00436 1.00816 1.20339 0.91944 0.92092 0.79270 0.97466 1.21311 1.33294 1.13882 0.89875 0.91207 1.25817 0.94755 0.95634 1.02154 1.70016 1.36716 1.23731 1.25158 0.85198 0.79105 0.78083 0.77146 1.19265 1.20508 1.18778 1.86468 1.75908 1.43583 1.21346 1.24264 0.73613 0.85623 0.86650 1.90577 1.50186 1.18434 1.85213 1.21023 1.00988 0.98619 0.87570 0.85422 1.21609 0.93027 0.99883 1.00242 1.19972 1.03218 0.95974 0.87301 1.20239 1.08422 0.99678 0.97738 1.24046 0.99645 0.98330 0.90989 1.77448 1.13859 1.03494 1.20531 1.48452 1.40094 1.20789 1.06237 1.22149 0.98460 0.82114 1.02353 1.20821 1.00622 0.96522 0.87122 1.19997 1.00681 0.96867 0.89489 0.95719 0.90173 0.93486 0.92066 0.89918 0.91917 0.89434 0.88656 0.77215 0.89775 0.88128 0.88199 0.89684 0.88886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.28 9.33 71.98 0.67 -6.61 16 2 C 0.22 11.71 2.56 29.85 0.08 11.79 16 3 H 0.01 0.46 7.16 -2.39 -0.02 0.44 16 4 C -0.55 -30.45 8.90 25.60 0.23 -30.22 16 5 H 0.07 3.78 7.81 -2.91 -0.02 3.76 16 6 C 0.02 0.87 5.30 84.65 0.45 1.32 16 7 N -0.92 -52.26 11.32 21.45 0.24 -52.02 16 8 Si 0.98 42.21 29.54 68.60 2.03 44.24 16 9 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 10 H -0.28 -11.74 7.11 99.48 0.71 -11.04 16 11 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 12 O -0.36 -16.54 9.58 -51.38 -0.49 -17.03 16 13 C 0.45 18.13 7.23 71.24 0.51 18.65 16 14 O -0.55 -25.37 15.04 21.97 0.33 -25.04 16 15 C -0.06 -1.74 2.60 -11.38 -0.03 -1.77 16 16 H 0.13 3.09 8.11 -2.39 -0.02 3.07 16 17 C -0.11 -2.71 5.19 30.75 0.16 -2.55 16 18 C -0.03 -0.50 6.28 30.01 0.19 -0.31 16 19 C -0.25 -5.53 5.91 -20.14 -0.12 -5.65 16 20 C 0.05 1.13 12.00 85.06 1.02 2.15 16 21 N -0.33 -8.28 12.59 -57.27 -0.72 -9.00 16 22 N -0.37 -8.67 4.00 -356.01 -1.42 -10.10 16 23 C 0.09 1.38 11.32 127.77 1.45 2.82 16 24 C 0.08 1.87 6.73 41.64 0.28 2.15 16 25 C -0.03 -0.79 4.63 30.01 0.14 -0.65 16 26 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.08 4.39 6.07 -2.39 -0.01 4.37 16 28 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 29 H 0.27 14.38 8.31 -92.71 -0.77 13.61 16 30 H 0.08 2.17 7.87 -2.39 -0.02 2.15 16 31 H 0.06 1.62 8.11 -2.39 -0.02 1.61 16 32 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.21 2.86 8.06 -2.91 -0.02 2.84 16 35 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.10 1.26 7.57 -2.39 -0.02 1.25 16 37 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.08 2.34 7.79 -2.39 -0.02 2.32 16 39 H 0.09 2.15 7.75 -2.39 -0.02 2.14 16 Total: -1.00 -69.32 324.82 6.03 -63.29 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: 1.04 Total: 14.54 kcal Atomic # 6 Polarization: -13.90 SS G_CDS: 5.02 Total: -8.88 kcal Atomic # 7 Polarization: -69.21 SS G_CDS: -1.90 Total: -71.12 kcal Atomic # 8 Polarization: -41.91 SS G_CDS: -0.16 Total: -42.07 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.24 kcal Total: -69.32 6.03 -63.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798829648.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.200 kcal (2) G-P(sol) polarization free energy of solvation -69.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds