Wall clock time and date at job start Tue Mar 31 2020 00:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.47303 * 2 1 4 4 C 1.50707 * 109.47091 * 240.00178 * 2 1 3 5 5 H 1.07998 * 120.00336 * 240.00033 * 4 2 1 6 6 C 1.37884 * 119.99623 * 59.99823 * 4 2 1 7 7 N 1.31518 * 120.00031 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99709 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47178 * 60.00073 * 8 6 4 10 10 H 1.48497 * 109.46986 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47120 * 300.00007 * 8 6 4 12 12 O 1.45196 * 109.47482 * 120.00325 * 2 1 3 13 13 C 1.34234 * 116.99938 * 269.99807 * 12 2 1 14 14 O 1.20822 * 119.99973 * 0.02562 * 13 12 2 15 15 C 1.50700 * 120.00068 * 179.97438 * 13 12 2 16 16 H 1.09002 * 109.71482 * 59.38780 * 15 13 12 17 17 C 1.53382 * 109.71871 * 180.02562 * 15 13 12 18 18 C 1.53027 * 109.72253 * 170.22924 * 17 15 13 19 19 C 1.53371 * 109.75429 * 288.29399 * 18 17 15 20 20 C 1.50946 * 108.20512 * 50.66690 * 19 18 17 21 21 N 1.30129 * 128.28609 * 163.24544 * 20 19 18 22 22 N 1.40314 * 108.12111 * 180.11731 * 21 20 19 23 23 C 1.46501 * 126.00259 * 179.97438 * 22 21 20 24 24 C 1.35197 * 107.99540 * 359.97438 * 22 21 20 25 25 C 1.34571 * 107.61812 * 359.95365 * 24 22 21 26 26 H 1.09002 * 109.47001 * 299.99731 * 1 2 3 27 27 H 1.08994 * 109.47774 * 59.99812 * 1 2 3 28 28 H 1.09004 * 109.47303 * 180.02562 * 1 2 3 29 29 H 0.96998 * 119.99390 * 180.02562 * 7 6 4 30 30 H 1.08995 * 109.42906 * 290.30477 * 17 15 13 31 31 H 1.08997 * 109.42853 * 50.15512 * 17 15 13 32 32 H 1.08991 * 109.42748 * 48.38624 * 18 17 15 33 33 H 1.09004 * 109.41939 * 168.26988 * 18 17 15 34 34 H 1.09008 * 109.71566 * 170.34131 * 19 18 17 35 35 H 1.08995 * 109.71959 * 290.98426 * 19 18 17 36 36 H 1.09006 * 109.46885 * 270.00858 * 23 22 21 37 37 H 1.08995 * 109.47525 * 30.01331 * 23 22 21 38 38 H 1.09005 * 109.46861 * 150.01388 * 23 22 21 39 39 H 1.07997 * 126.19653 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6991 -0.2392 -2.4828 7 7 0.9425 0.8298 -2.6034 8 14 2.3211 -1.1202 -4.0080 9 1 1.8256 -2.5201 -4.0079 10 1 1.8257 -0.4204 -5.2205 11 1 3.8061 -1.1207 -4.0083 12 8 2.0140 -0.6845 1.1855 13 6 2.2172 0.0640 2.2811 14 8 1.9974 1.2516 2.2506 15 6 2.7184 -0.5773 3.5494 16 1 3.6824 -1.0517 3.3655 17 6 2.8651 0.4868 4.6443 18 6 3.1368 -0.1904 5.9894 19 6 1.8640 -0.8878 6.4852 20 6 1.3327 -1.7506 5.3664 21 7 0.4694 -2.7217 5.4375 22 7 0.2822 -3.2347 4.1450 23 6 -0.6078 -4.3387 3.7772 24 6 1.0675 -2.5313 3.2986 25 6 1.7252 -1.6088 4.0249 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 0.7079 1.1609 -3.4844 30 1 3.6949 1.1489 4.3976 31 1 1.9455 1.0682 4.7104 32 1 3.9310 -0.9273 5.8704 33 1 3.4448 0.5602 6.7174 34 1 2.0981 -1.5094 7.3495 35 1 1.1187 -0.1413 6.7596 36 1 -0.0633 -5.2809 3.8406 37 1 -1.4574 -4.3634 4.4595 38 1 -0.9648 -4.1933 2.7576 39 1 1.1516 -2.6820 2.2325 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000798830499.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:48:30 Heat of formation + Delta-G solvation = -25.283486 kcal Electronic energy + Delta-G solvation = -22159.252906 eV Core-core repulsion = 18875.112279 eV Total energy + Delta-G solvation = -3284.140627 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.42860 -39.43296 -36.73149 -35.46008 -33.28931 -32.63956 -31.85313 -29.54729 -28.50516 -27.13492 -25.33527 -24.15608 -22.17307 -21.50464 -20.59066 -19.45691 -18.68027 -16.99417 -16.57587 -16.46516 -15.60696 -15.20774 -15.01079 -14.75253 -14.38796 -14.28262 -13.64479 -12.99968 -12.90753 -12.77052 -12.69585 -12.40035 -12.17964 -11.78436 -11.62836 -11.29461 -11.14806 -11.04243 -10.91803 -10.81198 -10.78601 -10.39205 -10.32398 -10.28124 -9.56783 -9.51086 -9.09979 -8.91414 -8.50123 -8.15850 -6.19365 -4.26610 2.03739 2.56650 2.78395 3.14733 3.24326 3.28458 3.30648 3.77387 4.31865 4.39542 4.84446 4.88222 5.01124 5.08576 5.13797 5.15124 5.31145 5.39578 5.40412 5.53481 5.62154 5.72912 5.74488 5.88218 6.02238 6.10192 6.23437 6.31305 6.45499 6.63851 6.75179 6.87547 6.91964 7.14927 7.19788 7.59268 7.72329 7.83368 7.95230 8.14111 8.66283 8.90348 9.39129 10.87916 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.021240 B = 0.005099 C = 0.004451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.973523 B = 5489.606837 C = 6289.354990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.215 3.785 3 H 0.046 0.954 4 C -0.521 4.521 5 H 0.068 0.932 6 C 0.063 3.937 7 N -0.889 5.889 8 Si 0.911 3.089 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.274 1.274 12 O -0.358 6.358 13 C 0.461 3.539 14 O -0.519 6.519 15 C 0.000 4.000 16 H 0.106 0.894 17 C -0.103 4.103 18 C -0.113 4.113 19 C -0.037 4.037 20 C 0.086 3.914 21 N -0.299 5.299 22 N -0.385 5.385 23 C 0.105 3.895 24 C 0.087 3.913 25 C -0.238 4.238 26 H 0.015 0.985 27 H 0.098 0.902 28 H 0.034 0.966 29 H 0.266 0.734 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.072 0.928 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.007 -6.874 14.437 16.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.163 3.837 3 H 0.063 0.937 4 C -0.559 4.559 5 H 0.086 0.914 6 C -0.139 4.139 7 N -0.527 5.527 8 Si 0.738 3.262 9 H -0.200 1.200 10 H -0.211 1.211 11 H -0.200 1.200 12 O -0.274 6.274 13 C 0.303 3.697 14 O -0.409 6.409 15 C -0.020 4.020 16 H 0.124 0.876 17 C -0.140 4.140 18 C -0.151 4.151 19 C -0.077 4.077 20 C -0.083 4.083 21 N -0.120 5.120 22 N -0.167 5.167 23 C -0.036 4.036 24 C -0.058 4.058 25 C -0.249 4.249 26 H 0.034 0.966 27 H 0.117 0.883 28 H 0.053 0.947 29 H 0.076 0.924 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.094 0.906 34 H 0.099 0.901 35 H 0.101 0.899 36 H 0.090 0.910 37 H 0.104 0.896 38 H 0.108 0.892 39 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -0.046 -7.239 14.921 16.584 hybrid contribution 0.562 0.039 -1.684 1.776 sum 0.517 -7.201 13.237 15.077 Atomic orbital electron populations 1.22137 0.97734 0.99807 1.01338 1.20585 0.91215 0.93982 0.77913 0.93663 1.20984 1.32522 1.13475 0.88929 0.91403 1.24887 0.94931 0.95080 0.99046 1.69894 1.35960 1.22543 1.24253 0.86350 0.79250 0.79485 0.81129 1.20012 1.21055 1.19974 1.86434 1.75895 1.43718 1.21361 1.23262 0.74692 0.85865 0.85850 1.90583 1.48583 1.17029 1.84716 1.19379 0.97884 0.94321 0.90450 0.87623 1.21452 1.03630 0.96480 0.92451 1.21566 0.96912 0.99774 0.96827 1.20132 0.97236 0.96457 0.93827 1.22262 0.95433 0.95342 0.95234 1.76946 1.21010 1.14246 0.99846 1.48458 1.35041 1.28436 1.04786 1.21820 0.93061 0.86714 1.02034 1.22435 0.92667 0.92817 0.97879 1.19498 1.08367 1.03825 0.93209 0.96633 0.88341 0.94734 0.92360 0.90698 0.90552 0.91318 0.90642 0.90118 0.89867 0.90982 0.89621 0.89239 0.79605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.84 9.33 37.15 0.35 -3.49 16 2 C 0.22 5.71 2.56 -27.88 -0.07 5.63 16 3 H 0.05 1.34 7.16 -51.93 -0.37 0.97 16 4 C -0.52 -14.33 8.90 -34.43 -0.31 -14.63 16 5 H 0.07 1.82 7.81 -52.49 -0.41 1.41 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -25.08 11.32 55.43 0.63 -24.45 16 8 Si 0.91 20.78 29.54 -169.99 -5.02 15.76 16 9 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 10 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 12 O -0.36 -8.25 8.35 -39.27 -0.33 -8.58 16 13 C 0.46 9.68 7.12 36.01 0.26 9.94 16 14 O -0.52 -12.37 15.06 -18.75 -0.28 -12.65 16 15 C 0.00 0.00 3.00 -92.64 -0.28 -0.28 16 16 H 0.11 1.50 8.14 -51.93 -0.42 1.08 16 17 C -0.10 -1.38 4.62 -26.52 -0.12 -1.51 16 18 C -0.11 -1.15 5.86 -26.53 -0.16 -1.31 16 19 C -0.04 -0.42 6.31 -27.57 -0.17 -0.59 16 20 C 0.09 1.27 7.10 -82.34 -0.58 0.69 16 21 N -0.30 -4.71 12.56 33.75 0.42 -4.28 16 22 N -0.39 -5.62 4.02 -68.29 -0.27 -5.89 16 23 C 0.11 1.04 11.47 59.85 0.69 1.73 16 24 C 0.09 1.38 10.71 -17.37 -0.19 1.19 16 25 C -0.24 -3.80 5.41 -104.98 -0.57 -4.37 16 26 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.10 2.66 6.07 -51.93 -0.32 2.35 16 28 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 30 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.08 1.15 7.75 -51.93 -0.40 0.75 16 32 H 0.07 0.66 8.10 -51.93 -0.42 0.24 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.08 0.77 8.14 -51.92 -0.42 0.35 16 35 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.19 2.97 7.07 -52.49 -0.37 2.60 16 LS Contribution 323.54 15.07 4.88 4.88 Total: -1.00 -32.40 323.54 -6.88 -39.28 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -5.65 Total: 1.33 kcal Atomic # 6 Polarization: -4.14 SS G_CDS: -1.25 Total: -5.39 kcal Atomic # 7 Polarization: -35.40 SS G_CDS: 0.78 Total: -34.63 kcal Atomic # 8 Polarization: -20.62 SS G_CDS: -0.61 Total: -21.23 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.40 -6.88 -39.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798830499.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.995 kcal (2) G-P(sol) polarization free energy of solvation -32.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds