Wall clock time and date at job start Tue Mar 31 2020 00:48:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.47303 * 2 1 4 4 C 1.50707 * 109.47091 * 240.00178 * 2 1 3 5 5 H 1.07998 * 120.00336 * 240.00033 * 4 2 1 6 6 C 1.37884 * 119.99623 * 59.99823 * 4 2 1 7 7 N 1.31518 * 120.00031 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99709 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47178 * 60.00073 * 8 6 4 10 10 H 1.48497 * 109.46986 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47120 * 300.00007 * 8 6 4 12 12 O 1.45196 * 109.47482 * 120.00325 * 2 1 3 13 13 C 1.34234 * 116.99938 * 269.99807 * 12 2 1 14 14 O 1.20822 * 119.99973 * 0.02562 * 13 12 2 15 15 C 1.50700 * 120.00068 * 179.97438 * 13 12 2 16 16 H 1.09002 * 109.71482 * 59.38780 * 15 13 12 17 17 C 1.53382 * 109.71871 * 180.02562 * 15 13 12 18 18 C 1.53027 * 109.72253 * 170.22924 * 17 15 13 19 19 C 1.53371 * 109.75429 * 288.29399 * 18 17 15 20 20 C 1.50946 * 108.20512 * 50.66690 * 19 18 17 21 21 N 1.30129 * 128.28609 * 163.24544 * 20 19 18 22 22 N 1.40314 * 108.12111 * 180.11731 * 21 20 19 23 23 C 1.46501 * 126.00259 * 179.97438 * 22 21 20 24 24 C 1.35197 * 107.99540 * 359.97438 * 22 21 20 25 25 C 1.34571 * 107.61812 * 359.95365 * 24 22 21 26 26 H 1.09002 * 109.47001 * 299.99731 * 1 2 3 27 27 H 1.08994 * 109.47774 * 59.99812 * 1 2 3 28 28 H 1.09004 * 109.47303 * 180.02562 * 1 2 3 29 29 H 0.96998 * 119.99390 * 180.02562 * 7 6 4 30 30 H 1.08995 * 109.42906 * 290.30477 * 17 15 13 31 31 H 1.08997 * 109.42853 * 50.15512 * 17 15 13 32 32 H 1.08991 * 109.42748 * 48.38624 * 18 17 15 33 33 H 1.09004 * 109.41939 * 168.26988 * 18 17 15 34 34 H 1.09008 * 109.71566 * 170.34131 * 19 18 17 35 35 H 1.08995 * 109.71959 * 290.98426 * 19 18 17 36 36 H 1.09006 * 109.46885 * 270.00858 * 23 22 21 37 37 H 1.08995 * 109.47525 * 30.01331 * 23 22 21 38 38 H 1.09005 * 109.46861 * 150.01388 * 23 22 21 39 39 H 1.07997 * 126.19653 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6991 -0.2392 -2.4828 7 7 0.9425 0.8298 -2.6034 8 14 2.3211 -1.1202 -4.0080 9 1 1.8256 -2.5201 -4.0079 10 1 1.8257 -0.4204 -5.2205 11 1 3.8061 -1.1207 -4.0083 12 8 2.0140 -0.6845 1.1855 13 6 2.2172 0.0640 2.2811 14 8 1.9974 1.2516 2.2506 15 6 2.7184 -0.5773 3.5494 16 1 3.6824 -1.0517 3.3655 17 6 2.8651 0.4868 4.6443 18 6 3.1368 -0.1904 5.9894 19 6 1.8640 -0.8878 6.4852 20 6 1.3327 -1.7506 5.3664 21 7 0.4694 -2.7217 5.4375 22 7 0.2822 -3.2347 4.1450 23 6 -0.6078 -4.3387 3.7772 24 6 1.0675 -2.5313 3.2986 25 6 1.7252 -1.6088 4.0249 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 0.7079 1.1609 -3.4844 30 1 3.6949 1.1489 4.3976 31 1 1.9455 1.0682 4.7104 32 1 3.9310 -0.9273 5.8704 33 1 3.4448 0.5602 6.7174 34 1 2.0981 -1.5094 7.3495 35 1 1.1187 -0.1413 6.7596 36 1 -0.0633 -5.2809 3.8406 37 1 -1.4574 -4.3634 4.4595 38 1 -0.9648 -4.1933 2.7576 39 1 1.1516 -2.6820 2.2325 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000798830499.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:48:29 Heat of formation + Delta-G solvation = -43.960333 kcal Electronic energy + Delta-G solvation = -22160.062794 eV Core-core repulsion = 18875.112279 eV Total energy + Delta-G solvation = -3284.950516 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.60022 -41.15030 -38.08217 -37.07724 -35.32342 -33.76155 -32.94094 -31.55829 -29.66354 -28.11747 -27.45264 -25.45374 -23.56606 -22.71325 -22.08455 -21.05981 -19.77402 -18.79526 -18.44788 -17.75920 -17.25846 -16.61447 -16.39939 -16.21981 -15.62812 -15.54185 -14.84125 -14.75257 -14.14466 -13.99836 -13.76906 -13.73934 -13.56364 -13.33601 -13.15838 -12.97367 -12.81667 -12.68194 -12.38930 -12.22254 -12.12719 -11.97930 -11.76909 -11.57212 -11.48646 -11.10539 -10.97760 -10.58669 -10.21317 -9.33329 -8.27486 -6.44481 0.86790 1.30551 1.42548 1.46164 1.54016 1.62671 1.66876 2.14044 2.44905 3.03380 3.35268 3.72560 3.84755 3.98995 4.12788 4.17613 4.30470 4.38974 4.42711 4.46673 4.54839 4.66187 4.67414 4.71118 4.77087 4.83754 4.93838 5.02263 5.13581 5.16574 5.21465 5.27974 5.46809 5.49313 5.62243 5.68606 5.93149 6.06044 6.11433 6.61418 6.70140 7.00384 7.27996 8.80003 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.021240 B = 0.005099 C = 0.004451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.973523 B = 5489.606837 C = 6289.354990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.219 3.781 3 H 0.003 0.997 4 C -0.545 4.545 5 H 0.070 0.930 6 C 0.016 3.984 7 N -0.918 5.918 8 Si 0.982 3.018 9 H -0.262 1.262 10 H -0.280 1.280 11 H -0.268 1.268 12 O -0.357 6.357 13 C 0.455 3.545 14 O -0.552 6.552 15 C 0.008 3.992 16 H 0.126 0.874 17 C -0.101 4.101 18 C -0.101 4.101 19 C -0.038 4.038 20 C 0.083 3.917 21 N -0.318 5.318 22 N -0.386 5.386 23 C 0.095 3.905 24 C 0.074 3.926 25 C -0.256 4.256 26 H 0.015 0.985 27 H 0.079 0.921 28 H 0.046 0.954 29 H 0.270 0.730 30 H 0.079 0.921 31 H 0.055 0.945 32 H 0.080 0.920 33 H 0.106 0.894 34 H 0.103 0.897 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.099 0.901 39 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.758 -8.366 15.361 17.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.166 3.834 3 H 0.021 0.979 4 C -0.582 4.582 5 H 0.088 0.912 6 C -0.183 4.183 7 N -0.556 5.556 8 Si 0.805 3.195 9 H -0.187 1.187 10 H -0.205 1.205 11 H -0.193 1.193 12 O -0.273 6.273 13 C 0.299 3.701 14 O -0.444 6.444 15 C -0.011 4.011 16 H 0.143 0.857 17 C -0.139 4.139 18 C -0.139 4.139 19 C -0.077 4.077 20 C -0.085 4.085 21 N -0.139 5.139 22 N -0.168 5.168 23 C -0.045 4.045 24 C -0.072 4.072 25 C -0.268 4.268 26 H 0.034 0.966 27 H 0.098 0.902 28 H 0.066 0.934 29 H 0.079 0.921 30 H 0.098 0.902 31 H 0.074 0.926 32 H 0.098 0.902 33 H 0.124 0.876 34 H 0.121 0.879 35 H 0.107 0.893 36 H 0.110 0.890 37 H 0.115 0.885 38 H 0.118 0.882 39 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 0.695 -8.755 15.875 18.142 hybrid contribution 0.288 0.519 -1.940 2.029 sum 0.983 -8.236 13.935 16.217 Atomic orbital electron populations 1.21942 0.97066 1.00223 1.00322 1.20277 0.91715 0.92024 0.79422 0.97889 1.21257 1.33304 1.13900 0.89751 0.91153 1.25828 0.94711 0.95622 1.02164 1.70024 1.36641 1.23767 1.25205 0.85248 0.78794 0.78657 0.76809 1.18704 1.20492 1.19339 1.86446 1.76063 1.43514 1.21259 1.24421 0.73548 0.85644 0.86443 1.90562 1.50013 1.18610 1.85170 1.19536 0.98434 0.95027 0.88154 0.85658 1.21502 1.02877 0.95890 0.93582 1.21552 0.96749 1.00470 0.95139 1.20332 0.97636 0.96387 0.93364 1.22815 0.94766 0.95247 0.95705 1.76909 1.21584 1.14911 1.00520 1.48813 1.34915 1.28816 1.04227 1.22166 0.93133 0.86263 1.02920 1.22457 0.93438 0.93463 0.97850 1.19625 1.08999 1.04001 0.94132 0.96630 0.90239 0.93445 0.92079 0.90188 0.92589 0.90165 0.87588 0.87904 0.89272 0.89018 0.88498 0.88206 0.80273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.14 9.33 71.98 0.67 -6.46 16 2 C 0.22 11.98 2.56 29.85 0.08 12.06 16 3 H 0.00 0.20 7.16 -2.39 -0.02 0.19 16 4 C -0.54 -30.35 8.90 25.60 0.23 -30.13 16 5 H 0.07 3.79 7.81 -2.91 -0.02 3.77 16 6 C 0.02 0.89 5.30 84.66 0.45 1.34 16 7 N -0.92 -52.64 11.32 21.45 0.24 -52.40 16 8 Si 0.98 42.21 29.54 68.60 2.03 44.24 16 9 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 10 H -0.28 -11.70 7.11 99.48 0.71 -11.00 16 11 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 12 O -0.36 -16.86 8.35 -51.46 -0.43 -17.29 16 13 C 0.45 19.54 7.12 71.24 0.51 20.04 16 14 O -0.55 -27.26 15.06 21.98 0.33 -26.93 16 15 C 0.01 0.27 3.00 -12.10 -0.04 0.23 16 16 H 0.13 3.41 8.14 -2.39 -0.02 3.39 16 17 C -0.10 -2.60 4.62 30.73 0.14 -2.46 16 18 C -0.10 -1.76 5.86 30.73 0.18 -1.58 16 19 C -0.04 -0.75 6.31 30.05 0.19 -0.56 16 20 C 0.08 2.33 7.10 43.44 0.31 2.64 16 21 N -0.32 -9.55 12.56 -47.13 -0.59 -10.14 16 22 N -0.39 -10.87 4.02 -369.97 -1.49 -12.36 16 23 C 0.09 1.75 11.47 127.77 1.47 3.21 16 24 C 0.07 2.33 10.71 83.33 0.89 3.22 16 25 C -0.26 -8.01 5.41 -20.10 -0.11 -8.12 16 26 H 0.01 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.08 4.43 6.07 -2.39 -0.01 4.41 16 28 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 29 H 0.27 14.52 8.31 -92.71 -0.77 13.75 16 30 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.06 1.67 7.75 -2.39 -0.02 1.65 16 32 H 0.08 1.25 8.10 -2.39 -0.02 1.23 16 33 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.10 1.60 8.14 -2.38 -0.02 1.58 16 35 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 37 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.10 1.61 8.14 -2.38 -0.02 1.59 16 39 H 0.18 5.80 7.07 -2.91 -0.02 5.78 16 Total: -1.00 -71.10 323.54 6.10 -65.00 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: 1.04 Total: 16.44 kcal Atomic # 6 Polarization: -11.53 SS G_CDS: 4.96 Total: -6.56 kcal Atomic # 7 Polarization: -73.06 SS G_CDS: -1.84 Total: -74.90 kcal Atomic # 8 Polarization: -44.12 SS G_CDS: -0.10 Total: -44.22 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.24 kcal Total: -71.10 6.10 -65.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798830499.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.044 kcal (2) G-P(sol) polarization free energy of solvation -71.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds