Wall clock time and date at job start Tue Mar 31 2020 00:41:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09002 * 109.46916 * 2 1 4 4 N 1.46500 * 109.46837 * 119.99433 * 2 1 3 5 5 C 1.34773 * 120.00431 * 275.00470 * 4 2 1 6 6 O 1.21593 * 119.99894 * 359.97438 * 5 4 2 7 7 N 1.34777 * 120.00097 * 179.72742 * 5 4 2 8 8 C 1.46504 * 119.99854 * 180.27545 * 7 5 4 9 9 C 1.50701 * 109.46923 * 179.97438 * 8 7 5 10 10 H 1.07998 * 120.00145 * 359.97438 * 9 8 7 11 11 C 1.37869 * 120.00027 * 179.97438 * 9 8 7 12 12 N 1.31513 * 120.00241 * 180.02562 * 11 9 8 13 13 Si 1.86809 * 119.99866 * 0.02562 * 11 9 8 14 14 H 1.48506 * 109.46710 * 90.00048 * 13 11 9 15 15 H 1.48500 * 109.46865 * 209.99357 * 13 11 9 16 16 H 1.48491 * 109.47392 * 329.99819 * 13 11 9 17 17 C 1.52995 * 109.47295 * 239.99616 * 2 1 3 18 18 H 1.09007 * 109.46938 * 65.00437 * 17 2 1 19 19 O 1.42897 * 109.47309 * 305.00101 * 17 2 1 20 20 C 1.50701 * 109.47091 * 184.99892 * 17 2 1 21 21 C 1.38233 * 119.99687 * 84.73133 * 20 17 2 22 22 C 1.38235 * 119.99919 * 179.81096 * 21 20 17 23 23 C 1.38233 * 120.00037 * 0.39397 * 22 21 20 24 24 C 1.38240 * 119.99887 * 359.85766 * 23 22 21 25 25 C 1.38232 * 119.99975 * 359.95594 * 24 23 22 26 26 H 1.08994 * 109.47203 * 180.02562 * 1 2 3 27 27 H 1.08991 * 109.47246 * 300.00614 * 1 2 3 28 28 H 1.09004 * 109.46414 * 60.00139 * 1 2 3 29 29 H 0.97000 * 119.99456 * 95.00032 * 4 2 1 30 30 H 0.97000 * 119.99736 * 0.26819 * 7 5 4 31 31 H 1.08998 * 109.46968 * 299.99782 * 8 7 5 32 32 H 1.08997 * 109.47198 * 59.99605 * 8 7 5 33 33 H 0.97003 * 119.99905 * 179.97438 * 12 11 9 34 34 H 0.96693 * 114.00253 * 300.00476 * 19 17 2 35 35 H 1.08006 * 120.00056 * 359.97438 * 21 20 17 36 36 H 1.08006 * 119.99885 * 180.22594 * 22 21 20 37 37 H 1.07995 * 120.00296 * 179.83249 * 23 22 21 38 38 H 1.08000 * 119.99820 * 179.97438 * 24 23 22 39 39 H 1.08001 * 120.00194 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1470 -0.0182 2.3572 6 8 1.8582 1.1617 2.4116 7 7 2.5910 -0.6548 3.4590 8 6 2.7250 0.0746 4.7225 9 6 3.2358 -0.8588 5.7896 10 1 3.4397 -1.8921 5.5508 11 6 3.4427 -0.3937 7.0709 12 7 3.8889 -1.2081 8.0021 13 14 3.0893 1.3935 7.4842 14 1 1.6790 1.5290 7.9291 15 1 3.9965 1.8386 8.5724 16 1 3.3114 2.2334 6.2800 17 6 2.0401 -0.7213 -1.2491 18 1 1.7518 -0.1583 -2.1369 19 8 1.4704 -2.0304 -1.3093 20 6 3.5420 -0.8294 -1.1887 21 6 4.1327 -1.8725 -0.5004 22 6 5.5104 -1.9739 -0.4483 23 6 6.2974 -1.0276 -1.0776 24 6 5.7066 0.0185 -1.7616 25 6 4.3290 0.1177 -1.8169 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8898 28 1 -0.3632 0.5138 -0.8901 29 1 2.2490 -1.6317 1.1527 30 1 2.8216 -1.5960 3.4155 31 1 3.4269 0.8985 4.5936 32 1 1.7531 0.4685 5.0195 33 1 4.0349 -0.8807 8.9035 34 1 1.6858 -2.5884 -0.5496 35 1 3.5179 -2.6098 -0.0056 36 1 5.9718 -2.7910 0.0865 37 1 7.3736 -1.1053 -1.0346 38 1 6.3215 0.7580 -2.2529 39 1 3.8675 0.9352 -2.3509 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812207606.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:41:26 Heat of formation + Delta-G solvation = -83.893005 kcal Electronic energy + Delta-G solvation = -21685.026757 eV Core-core repulsion = 18398.344631 eV Total energy + Delta-G solvation = -3286.682126 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.47033 -40.26812 -38.35782 -36.23457 -35.40810 -34.42317 -32.61073 -31.78930 -31.51649 -29.45230 -27.09776 -24.53564 -23.52567 -23.00798 -22.06456 -21.50992 -20.13288 -18.71800 -18.33190 -17.79505 -16.74395 -16.68045 -16.41756 -16.24147 -16.06317 -15.39842 -15.13169 -14.87556 -14.56352 -14.44030 -14.35435 -14.11102 -13.95178 -13.37942 -13.15459 -13.05015 -12.85208 -12.70338 -12.44170 -12.03288 -11.93217 -11.87527 -11.64571 -11.28489 -11.11745 -10.91111 -10.31283 -9.83150 -9.68691 -9.62447 -8.39338 -6.45750 0.39771 0.49809 1.33132 1.35212 1.48405 1.81994 2.23761 2.28977 2.82059 2.96539 3.35228 3.45740 3.57750 3.81731 3.93025 4.11720 4.25629 4.30828 4.40560 4.48871 4.61983 4.73037 4.77413 4.80615 5.00581 5.05844 5.06980 5.13070 5.25842 5.32479 5.51465 5.54144 5.56321 5.62081 5.63490 5.95684 6.09570 6.26318 6.56124 6.59002 7.14565 7.25803 7.68130 8.75340 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.018493 B = 0.004617 C = 0.004127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.736657 B = 6062.519299 C = 6783.476441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.135 3.865 3 H 0.077 0.923 4 N -0.725 5.725 5 C 0.698 3.302 6 O -0.642 6.642 7 N -0.722 5.722 8 C 0.253 3.747 9 C -0.544 4.544 10 H 0.060 0.940 11 C 0.029 3.971 12 N -0.931 5.931 13 Si 0.935 3.065 14 H -0.265 1.265 15 H -0.273 1.273 16 H -0.262 1.262 17 C 0.157 3.843 18 H 0.139 0.861 19 O -0.551 6.551 20 C -0.125 4.125 21 C -0.120 4.120 22 C -0.129 4.129 23 C -0.133 4.133 24 C -0.129 4.129 25 C -0.123 4.123 26 H 0.071 0.929 27 H 0.034 0.966 28 H 0.084 0.916 29 H 0.401 0.599 30 H 0.404 0.596 31 H 0.007 0.993 32 H 0.008 0.992 33 H 0.272 0.728 34 H 0.381 0.619 35 H 0.133 0.867 36 H 0.135 0.865 37 H 0.135 0.865 38 H 0.139 0.861 39 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.358 -1.271 -22.501 22.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.029 3.971 3 H 0.095 0.905 4 N -0.383 5.383 5 C 0.398 3.602 6 O -0.524 6.524 7 N -0.375 5.375 8 C 0.128 3.872 9 C -0.582 4.582 10 H 0.078 0.922 11 C -0.172 4.172 12 N -0.570 5.570 13 Si 0.759 3.241 14 H -0.190 1.190 15 H -0.198 1.198 16 H -0.187 1.187 17 C 0.097 3.903 18 H 0.156 0.844 19 O -0.358 6.358 20 C -0.125 4.125 21 C -0.138 4.138 22 C -0.147 4.147 23 C -0.151 4.151 24 C -0.147 4.147 25 C -0.141 4.141 26 H 0.090 0.910 27 H 0.053 0.947 28 H 0.103 0.897 29 H 0.238 0.762 30 H 0.239 0.761 31 H 0.025 0.975 32 H 0.026 0.974 33 H 0.081 0.919 34 H 0.230 0.770 35 H 0.151 0.849 36 H 0.152 0.848 37 H 0.153 0.847 38 H 0.157 0.843 39 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -0.803 -0.002 -22.808 22.822 hybrid contribution 0.584 -0.328 1.343 1.501 sum -0.219 -0.331 -21.465 21.469 Atomic orbital electron populations 1.22045 0.93952 1.03044 1.02047 1.21550 0.95007 0.97243 0.83281 0.90527 1.44943 1.71710 1.13660 1.08011 1.16157 0.78166 0.84739 0.81112 1.90832 1.59546 1.16528 1.85507 1.45083 1.69560 1.14179 1.08671 1.18917 0.95128 0.92145 0.80970 1.21260 1.45325 0.97468 0.94102 0.92179 1.25542 0.93901 1.01846 0.95882 1.69975 1.46091 1.37442 1.03446 0.85891 0.79118 0.80411 0.78665 1.18963 1.19782 1.18676 1.21111 0.87097 0.84598 0.97469 0.84403 1.86628 1.75615 1.24480 1.49090 1.20603 0.96542 0.96479 0.98877 1.21067 0.95412 0.98369 0.98995 1.21419 0.94070 0.99808 0.99445 1.21488 1.00931 0.94976 0.97671 1.21442 0.95146 0.98634 0.99465 1.21265 0.94181 0.98905 0.99757 0.90994 0.94653 0.89682 0.76171 0.76137 0.97471 0.97404 0.91855 0.76987 0.84947 0.84753 0.84686 0.84302 0.84294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.30 9.29 71.98 0.67 -2.63 16 2 C 0.13 3.06 2.47 44.99 0.11 3.17 16 3 H 0.08 2.10 7.58 -2.39 -0.02 2.08 16 4 N -0.73 -18.97 4.27 -457.80 -1.95 -20.92 16 5 C 0.70 26.73 8.53 179.06 1.53 28.26 16 6 O -0.64 -30.08 16.01 -4.01 -0.06 -30.15 16 7 N -0.72 -29.25 5.55 -482.29 -2.68 -31.93 16 8 C 0.25 12.62 4.50 85.63 0.38 13.00 16 9 C -0.54 -30.08 9.83 25.60 0.25 -29.83 16 10 H 0.06 3.47 7.84 -2.91 -0.02 3.45 16 11 C 0.03 1.62 5.47 84.65 0.46 2.09 16 12 N -0.93 -55.52 13.96 21.44 0.30 -55.22 16 13 Si 0.94 44.41 27.47 68.60 1.88 46.30 16 14 H -0.26 -12.16 7.11 99.48 0.71 -11.45 16 15 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 16 H -0.26 -12.47 6.54 99.48 0.65 -11.82 16 17 C 0.16 2.68 3.12 29.85 0.09 2.78 16 18 H 0.14 1.90 8.05 -2.38 -0.02 1.88 16 19 O -0.55 -9.01 12.26 -148.98 -1.83 -10.84 16 20 C -0.12 -2.41 4.78 -19.87 -0.09 -2.51 16 21 C -0.12 -2.30 8.17 22.27 0.18 -2.12 16 22 C -0.13 -2.57 10.05 22.27 0.22 -2.35 16 23 C -0.13 -2.58 10.05 22.27 0.22 -2.36 16 24 C -0.13 -2.43 10.05 22.27 0.22 -2.21 16 25 C -0.12 -2.35 9.68 22.27 0.22 -2.13 16 26 H 0.07 1.42 7.56 -2.39 -0.02 1.40 16 27 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.40 8.01 5.62 -92.71 -0.52 7.49 16 30 H 0.40 14.15 8.34 -92.71 -0.77 13.38 16 31 H 0.01 0.39 7.20 -2.39 -0.02 0.37 16 32 H 0.01 0.42 7.57 -2.39 -0.02 0.40 16 33 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 34 H 0.38 4.55 6.26 -74.06 -0.46 4.08 16 35 H 0.13 1.90 5.62 -2.91 -0.02 1.88 16 36 H 0.13 2.26 8.06 -2.91 -0.02 2.23 16 37 H 0.14 2.11 8.06 -2.91 -0.02 2.08 16 38 H 0.14 2.00 8.06 -2.91 -0.02 1.98 16 39 H 0.14 2.05 8.06 -2.91 -0.02 2.02 16 Total: -1.00 -72.49 324.70 -0.59 -73.08 By element: Atomic # 1 Polarization: 27.26 SS G_CDS: -0.73 Total: 26.53 kcal Atomic # 6 Polarization: -1.33 SS G_CDS: 4.47 Total: 3.15 kcal Atomic # 7 Polarization: -103.74 SS G_CDS: -4.33 Total: -108.07 kcal Atomic # 8 Polarization: -39.10 SS G_CDS: -1.89 Total: -40.99 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 1.88 Total: 46.30 kcal Total: -72.49 -0.59 -73.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812207606.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.811 kcal (2) G-P(sol) polarization free energy of solvation -72.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds