Wall clock time and date at job start Tue Mar 31 2020 00:14:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08993 * 109.47301 * 2 1 4 4 C 1.50699 * 109.47120 * 239.99678 * 2 1 3 5 5 H 1.07999 * 120.00286 * 240.00082 * 4 2 1 6 6 C 1.37875 * 119.99852 * 60.00706 * 4 2 1 7 7 N 1.31519 * 119.99835 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 120.00151 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47076 * 60.00154 * 8 6 4 10 10 H 1.48497 * 109.47068 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.47221 * 299.99593 * 8 6 4 12 12 O 1.45197 * 109.46945 * 120.00363 * 2 1 3 13 13 C 1.34882 * 116.99986 * 269.99651 * 12 2 1 14 14 O 1.21604 * 119.99667 * 0.02562 * 13 12 2 15 15 C 1.46585 * 120.00261 * 179.97438 * 13 12 2 16 16 C 1.36925 * 126.92546 * 187.68889 * 15 13 12 17 17 N 1.33417 * 107.82389 * 180.02562 * 16 15 13 18 18 C 1.30587 * 109.70300 * 359.97438 * 17 16 15 19 19 N 1.34849 * 109.00435 * 0.03026 * 18 17 16 20 20 C 1.46442 * 124.99830 * 179.97438 * 19 18 17 21 21 H 1.08994 * 109.58544 * 102.70511 * 20 19 18 22 22 C 1.53005 * 109.57705 * 223.10562 * 20 19 18 23 23 C 1.53269 * 108.81286 * 342.90215 * 20 19 18 24 24 C 1.53145 * 109.43993 * 50.24235 * 23 20 19 25 25 C 1.51115 * 127.07291 * 180.02562 * 18 17 16 26 26 H 1.08999 * 109.47387 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47622 * 300.00178 * 1 2 3 28 28 H 1.08999 * 109.46885 * 59.99875 * 1 2 3 29 29 H 0.97004 * 120.00041 * 180.02562 * 7 6 4 30 30 H 1.07998 * 126.08292 * 0.02562 * 16 15 13 31 31 H 1.08998 * 109.47210 * 21.89438 * 22 20 19 32 32 H 1.09009 * 109.46826 * 141.89576 * 22 20 19 33 33 H 1.09000 * 109.46766 * 261.89344 * 22 20 19 34 34 H 1.08994 * 109.47707 * 170.23805 * 23 20 19 35 35 H 1.09009 * 109.47523 * 290.25198 * 23 20 19 36 36 H 1.09002 * 109.50975 * 170.75763 * 24 23 20 37 37 H 1.08998 * 109.50671 * 50.60880 * 24 23 20 38 38 H 1.08996 * 109.70644 * 283.66444 * 25 18 17 39 39 H 1.08999 * 109.71199 * 44.29311 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9429 0.8297 -2.6033 8 14 2.3225 -1.1196 -4.0079 9 1 1.8279 -2.5198 -4.0082 10 1 1.8270 -0.4199 -5.2204 11 1 3.8075 -1.1191 -4.0077 12 8 2.0139 -0.6845 1.1855 13 6 2.2181 0.0675 2.2864 14 8 1.9969 1.2629 2.2557 15 6 2.7054 -0.5562 3.5202 16 6 2.8222 0.0343 4.7500 17 7 3.3044 -0.8771 5.5966 18 6 3.4958 -2.0051 4.9670 19 7 3.1382 -1.8534 3.6757 20 6 3.2114 -2.9011 2.6552 21 1 2.2150 -3.3029 2.4719 22 6 3.7777 -2.3163 1.3597 23 6 4.1312 -4.0187 3.1594 24 6 3.7051 -4.4314 4.5713 25 6 4.0284 -3.2941 5.5487 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 0.7083 1.1610 -3.4844 30 1 2.5690 1.0561 4.9916 31 1 4.3418 -1.4114 1.5856 32 1 4.4358 -3.0466 0.8886 33 1 2.9590 -2.0744 0.6820 34 1 4.0589 -4.8776 2.4922 35 1 5.1605 -3.6604 3.1805 36 1 4.2467 -5.3300 4.8669 37 1 2.6335 -4.6303 4.5845 38 1 5.1074 -3.2185 5.6830 39 1 3.5507 -3.4891 6.5089 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000845467632.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:14:16 Heat of formation + Delta-G solvation = -48.760147 kcal Electronic energy + Delta-G solvation = -22630.311892 eV Core-core repulsion = 19345.153241 eV Total energy + Delta-G solvation = -3285.158651 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.61800 -41.04533 -38.26895 -37.42409 -35.40056 -34.72647 -31.83808 -31.74204 -30.43176 -28.12597 -27.45365 -25.17899 -23.93276 -23.35316 -22.54024 -21.18064 -20.25905 -19.21365 -18.50109 -17.79821 -17.16178 -16.77642 -16.57670 -16.24523 -15.62545 -15.41141 -15.22185 -14.88839 -14.42974 -14.22845 -14.04022 -13.83219 -13.59062 -13.30135 -13.16678 -12.89419 -12.79094 -12.48213 -12.36206 -12.16759 -12.03764 -11.92592 -11.88665 -11.65545 -11.42950 -11.20300 -10.76895 -10.69709 -10.58823 -9.62614 -8.27127 -6.43748 0.04507 1.42116 1.46084 1.50024 1.54409 1.62465 1.89548 2.06211 2.40803 3.04535 3.20652 3.51804 3.53520 3.71049 3.88794 4.12703 4.19121 4.32380 4.34653 4.47833 4.52662 4.66830 4.76826 4.77185 4.81426 4.87292 4.93287 5.01250 5.06057 5.09071 5.16637 5.32273 5.35567 5.39752 5.56470 5.73418 5.86042 6.03251 6.07275 6.59256 6.75135 6.87046 7.27073 8.80691 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.023330 B = 0.005583 C = 0.004719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.862194 B = 5014.218977 C = 5932.354361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.215 3.785 3 H 0.004 0.996 4 C -0.538 4.538 5 H 0.081 0.919 6 C 0.015 3.985 7 N -0.919 5.919 8 Si 0.980 3.020 9 H -0.260 1.260 10 H -0.283 1.283 11 H -0.268 1.268 12 O -0.334 6.334 13 C 0.525 3.475 14 O -0.544 6.544 15 C -0.094 4.094 16 C 0.064 3.936 17 N -0.518 5.518 18 C 0.242 3.758 19 N -0.423 5.423 20 C 0.125 3.875 21 H 0.095 0.905 22 C -0.174 4.174 23 C -0.125 4.125 24 C -0.121 4.121 25 C -0.036 4.036 26 H 0.047 0.953 27 H 0.017 0.983 28 H 0.081 0.919 29 H 0.269 0.731 30 H 0.189 0.811 31 H 0.030 0.970 32 H 0.091 0.909 33 H 0.095 0.905 34 H 0.117 0.883 35 H 0.080 0.920 36 H 0.121 0.879 37 H 0.070 0.930 38 H 0.113 0.887 39 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.839 -14.635 12.112 20.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.162 3.838 3 H 0.022 0.978 4 C -0.576 4.576 5 H 0.099 0.901 6 C -0.184 4.184 7 N -0.557 5.557 8 Si 0.804 3.196 9 H -0.185 1.185 10 H -0.209 1.209 11 H -0.193 1.193 12 O -0.250 6.250 13 C 0.372 3.628 14 O -0.436 6.436 15 C -0.208 4.208 16 C -0.091 4.091 17 N -0.237 5.237 18 C -0.020 4.020 19 N -0.105 5.105 20 C 0.024 3.976 21 H 0.113 0.887 22 C -0.231 4.231 23 C -0.163 4.163 24 C -0.158 4.158 25 C -0.074 4.074 26 H 0.066 0.934 27 H 0.036 0.964 28 H 0.100 0.900 29 H 0.078 0.922 30 H 0.206 0.794 31 H 0.049 0.951 32 H 0.110 0.890 33 H 0.113 0.887 34 H 0.135 0.865 35 H 0.098 0.902 36 H 0.139 0.861 37 H 0.088 0.912 38 H 0.131 0.869 39 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 6.823 -14.177 12.549 20.125 hybrid contribution -0.433 0.857 -1.899 2.128 sum 6.390 -13.319 10.650 18.211 Atomic orbital electron populations 1.22001 0.97117 1.00367 1.00605 1.20400 0.91809 0.92291 0.79288 0.97826 1.21290 1.33231 1.13916 0.89128 0.90125 1.25841 0.94771 0.95621 1.02214 1.70032 1.36680 1.23800 1.25146 0.85265 0.78756 0.78744 0.76867 1.18494 1.20877 1.19313 1.86899 1.75898 1.41369 1.20830 1.20110 0.74217 0.84824 0.83699 1.90805 1.51177 1.16854 1.84730 1.19991 1.17731 0.88035 0.95064 1.22865 0.99117 1.00179 0.86932 1.70061 1.20898 1.00100 1.32609 1.24575 0.98921 0.98139 0.80371 1.45837 1.44985 1.08762 1.10956 1.22033 1.02432 0.86505 0.86620 0.88739 1.22665 1.03063 1.00210 0.97113 1.22133 0.98612 0.96817 0.98690 1.21765 1.03084 0.98521 0.92465 1.20662 1.02708 0.84191 0.99853 0.93413 0.96382 0.90045 0.92170 0.79422 0.95066 0.88989 0.88738 0.86509 0.90179 0.86122 0.91156 0.86908 0.86667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.36 9.33 71.98 0.67 -6.69 16 2 C 0.22 11.56 2.57 29.85 0.08 11.64 16 3 H 0.00 0.24 7.16 -2.39 -0.02 0.22 16 4 C -0.54 -28.76 8.64 25.60 0.22 -28.54 16 5 H 0.08 4.04 6.39 -2.91 -0.02 4.02 16 6 C 0.02 0.81 5.30 84.65 0.45 1.26 16 7 N -0.92 -52.01 11.32 21.45 0.24 -51.76 16 8 Si 0.98 41.21 29.54 68.60 2.03 43.24 16 9 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 10 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 11 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 12 O -0.33 -15.61 5.13 -57.96 -0.30 -15.91 16 13 C 0.53 24.15 7.32 70.00 0.51 24.67 16 14 O -0.54 -28.27 16.18 19.49 0.32 -27.95 16 15 C -0.09 -3.59 6.43 40.10 0.26 -3.34 16 16 C 0.06 2.25 11.68 84.14 0.98 3.23 16 17 N -0.52 -16.46 11.19 -186.63 -2.09 -18.55 16 18 C 0.24 6.44 7.63 138.30 1.06 7.49 16 19 N -0.42 -12.91 2.94 -478.98 -1.41 -14.32 16 20 C 0.13 3.17 3.32 45.09 0.15 3.32 16 21 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 22 C -0.17 -5.39 7.92 71.98 0.57 -4.82 16 23 C -0.13 -1.82 5.02 30.73 0.15 -1.66 16 24 C -0.12 -1.28 5.96 30.78 0.18 -1.09 16 25 C -0.04 -0.51 6.33 30.12 0.19 -0.32 16 26 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 27 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.08 4.49 6.07 -2.39 -0.01 4.48 16 29 H 0.27 14.37 8.31 -92.70 -0.77 13.60 16 30 H 0.19 6.12 8.06 -2.91 -0.02 6.10 16 31 H 0.03 1.11 7.22 -2.39 -0.02 1.09 16 32 H 0.09 2.25 7.75 -2.38 -0.02 2.23 16 33 H 0.09 3.65 3.36 -12.89 -0.04 3.61 16 34 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.08 1.15 8.09 -2.38 -0.02 1.14 16 36 H 0.12 0.51 8.14 -2.39 -0.02 0.49 16 37 H 0.07 0.83 8.12 -2.39 -0.02 0.81 16 38 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -69.30 312.59 5.29 -64.01 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: 1.02 Total: 16.10 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: 5.47 Total: 5.14 kcal Atomic # 7 Polarization: -81.37 SS G_CDS: -3.25 Total: -84.63 kcal Atomic # 8 Polarization: -43.88 SS G_CDS: 0.02 Total: -43.86 kcal Atomic # 14 Polarization: 41.21 SS G_CDS: 2.03 Total: 43.24 kcal Total: -69.30 5.29 -64.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845467632.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.250 kcal (2) G-P(sol) polarization free energy of solvation -69.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds