Wall clock time and date at job start Tue Mar 31 2020 00:14:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47098 * 2 1 4 4 C 1.50695 * 109.47131 * 120.00191 * 2 1 3 5 5 H 1.08002 * 120.00142 * 119.99669 * 4 2 1 6 6 C 1.37877 * 119.99835 * 299.99962 * 4 2 1 7 7 N 1.31517 * 120.00314 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00002 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47012 * 60.00078 * 8 6 4 10 10 H 1.48498 * 109.47164 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.47127 * 300.00057 * 8 6 4 12 12 O 1.45198 * 109.46838 * 240.00057 * 2 1 3 13 13 C 1.34872 * 117.00323 * 90.00192 * 12 2 1 14 14 O 1.21611 * 119.99957 * 0.02562 * 13 12 2 15 15 C 1.46583 * 120.00417 * 179.71891 * 13 12 2 16 16 C 1.36928 * 126.92454 * 172.63542 * 15 13 12 17 17 N 1.33415 * 107.82189 * 179.91853 * 16 15 13 18 18 C 1.30582 * 109.70603 * 0.39501 * 17 16 15 19 19 N 1.34851 * 109.00412 * 359.72144 * 18 17 16 20 20 C 1.46439 * 124.99974 * 180.02562 * 19 18 17 21 21 H 1.09001 * 109.57940 * 257.10468 * 20 19 18 22 22 C 1.53002 * 109.57856 * 136.84079 * 20 19 18 23 23 C 1.53266 * 108.82037 * 17.04184 * 20 19 18 24 24 C 1.53154 * 109.43919 * 309.78188 * 23 20 19 25 25 C 1.51119 * 127.07927 * 179.65221 * 18 17 16 26 26 H 1.09000 * 109.47518 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47447 * 300.00283 * 1 2 3 28 28 H 1.09005 * 109.47200 * 60.00181 * 1 2 3 29 29 H 0.96994 * 120.00341 * 180.02562 * 7 6 4 30 30 H 1.08000 * 126.08727 * 0.02562 * 16 15 13 31 31 H 1.09006 * 109.46610 * 98.36855 * 22 20 19 32 32 H 1.09000 * 109.47039 * 218.36159 * 22 20 19 33 33 H 1.08995 * 109.47414 * 338.37368 * 22 20 19 34 34 H 1.09000 * 109.47294 * 69.77600 * 23 20 19 35 35 H 1.09002 * 109.47129 * 189.78947 * 23 20 19 36 36 H 1.09003 * 109.51145 * 189.25526 * 24 23 20 37 37 H 1.08997 * 109.51251 * 309.40805 * 24 23 20 38 38 H 1.09002 * 109.70080 * 76.41016 * 25 18 17 39 39 H 1.09000 * 109.70626 * 315.79247 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3213 -1.1204 4.0079 9 1 3.8063 -1.1210 4.0081 10 1 1.8269 -0.4200 5.2204 11 1 1.8257 -2.5203 4.0076 12 8 2.0139 -0.6845 -1.1856 13 6 2.2180 0.0676 -2.2864 14 8 1.9978 1.2631 -2.2554 15 6 2.7118 -0.5550 -3.5182 16 6 2.8354 0.0369 -4.7467 17 7 3.3229 -0.8734 -5.5914 18 6 3.5038 -2.0041 -4.9638 19 7 3.1388 -1.8540 -3.6744 20 6 3.1995 -2.9049 -2.6564 21 1 2.1990 -3.2992 -2.4783 22 6 3.7620 -2.3273 -1.3560 23 6 4.1150 -4.0270 -3.1582 24 6 3.6948 -4.4329 -4.5739 25 6 4.0314 -3.2951 -5.5460 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 0.7095 1.1618 3.4843 30 1 2.5846 1.0592 -4.9884 31 1 2.9410 -2.0864 -0.6805 32 1 4.4162 -3.0612 -0.8855 33 1 4.3291 -1.4227 -1.5756 34 1 5.1467 -3.6755 -3.1719 35 1 4.0329 -4.8873 -2.4939 36 1 4.2321 -5.3344 -4.8687 37 1 2.6220 -4.6245 -4.5944 38 1 5.1118 -3.2264 -5.6730 39 1 3.5587 -3.4839 -6.5098 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000845467636.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:14:20 Heat of formation + Delta-G solvation = -32.017825 kcal Electronic energy + Delta-G solvation = -22631.041146 eV Core-core repulsion = 19346.608496 eV Total energy + Delta-G solvation = -3284.432650 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.36765 -39.25602 -37.15220 -35.69613 -33.89259 -33.22363 -30.63842 -29.85769 -29.09047 -27.03730 -25.42704 -23.64736 -22.84444 -22.22683 -20.82910 -19.75414 -19.04924 -17.67462 -16.69809 -16.09676 -15.72749 -15.17928 -15.03256 -14.76011 -14.57449 -14.32293 -14.20360 -13.32612 -13.16367 -12.85632 -12.50327 -12.20950 -12.06357 -11.92702 -11.56364 -11.34072 -11.22807 -11.20378 -11.10375 -11.02267 -10.72682 -10.39649 -10.23439 -9.93590 -9.77732 -9.60102 -9.50911 -8.84539 -8.56493 -8.30111 -6.25236 -4.33508 1.48738 2.71972 2.95262 3.19700 3.23902 3.25527 3.55667 3.62627 4.17470 4.26512 4.41619 4.48081 4.56718 5.04951 5.08150 5.12006 5.17468 5.30492 5.48517 5.51859 5.54070 5.60800 5.69888 5.88429 5.91023 5.98950 6.18295 6.31499 6.56924 6.69666 6.77531 6.85466 6.91662 7.13482 7.21836 7.54492 7.65709 7.84417 8.03931 8.05802 8.53863 8.76656 9.32275 10.82000 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.023331 B = 0.005584 C = 0.004720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.828118 B = 5013.423873 C = 5930.221927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.211 3.789 3 H 0.048 0.952 4 C -0.524 4.524 5 H 0.070 0.930 6 C 0.065 3.935 7 N -0.885 5.885 8 Si 0.910 3.090 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.274 1.274 12 O -0.346 6.346 13 C 0.528 3.472 14 O -0.506 6.506 15 C -0.058 4.058 16 C 0.057 3.943 17 N -0.498 5.498 18 C 0.223 3.777 19 N -0.421 5.421 20 C 0.131 3.869 21 H 0.097 0.903 22 C -0.180 4.180 23 C -0.132 4.132 24 C -0.128 4.128 25 C -0.034 4.034 26 H 0.035 0.965 27 H 0.099 0.901 28 H 0.016 0.984 29 H 0.267 0.733 30 H 0.183 0.817 31 H 0.129 0.871 32 H 0.063 0.937 33 H 0.057 0.943 34 H 0.076 0.924 35 H 0.091 0.909 36 H 0.082 0.918 37 H 0.071 0.929 38 H 0.091 0.909 39 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.307 -11.091 -11.250 16.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.159 3.841 3 H 0.066 0.934 4 C -0.562 4.562 5 H 0.088 0.912 6 C -0.138 4.138 7 N -0.523 5.523 8 Si 0.737 3.263 9 H -0.200 1.200 10 H -0.210 1.210 11 H -0.199 1.199 12 O -0.263 6.263 13 C 0.372 3.628 14 O -0.395 6.395 15 C -0.172 4.172 16 C -0.097 4.097 17 N -0.217 5.217 18 C -0.039 4.039 19 N -0.104 5.104 20 C 0.029 3.971 21 H 0.115 0.885 22 C -0.236 4.236 23 C -0.170 4.170 24 C -0.166 4.166 25 C -0.072 4.072 26 H 0.055 0.945 27 H 0.118 0.882 28 H 0.035 0.965 29 H 0.077 0.923 30 H 0.200 0.800 31 H 0.147 0.853 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.094 0.906 35 H 0.110 0.890 36 H 0.101 0.899 37 H 0.090 0.910 38 H 0.109 0.891 39 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 5.296 -10.600 -11.673 16.633 hybrid contribution -0.017 -0.248 1.750 1.768 sum 5.279 -10.848 -9.923 15.621 Atomic orbital electron populations 1.22167 0.97580 1.00040 1.01503 1.20685 0.91454 0.94222 0.77717 0.93421 1.20985 1.32866 1.13530 0.88781 0.91155 1.24886 0.94837 0.95038 0.99057 1.69884 1.35676 1.22336 1.24373 0.86366 0.79207 0.79530 0.81228 1.19997 1.21000 1.19950 1.86817 1.75930 1.42213 1.21293 1.19575 0.75055 0.85052 0.83144 1.90842 1.49291 1.15310 1.84075 1.20351 1.14620 0.85886 0.96356 1.22628 1.00254 0.99623 0.87196 1.69977 1.19793 0.99348 1.32568 1.23415 1.02094 0.97093 0.81274 1.45666 1.45310 1.09377 1.09998 1.21801 1.01447 0.85947 0.87856 0.88494 1.22834 1.04286 1.00395 0.96085 1.22090 0.99832 0.97960 0.97081 1.21735 1.02565 0.98034 0.94262 1.20263 1.01540 0.86516 0.98927 0.94542 0.88237 0.96468 0.92259 0.79999 0.85308 0.91843 0.92369 0.90563 0.89034 0.89905 0.90987 0.89083 0.88555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.83 9.33 37.16 0.35 -3.48 16 2 C 0.21 5.40 2.57 -27.89 -0.07 5.33 16 3 H 0.05 1.37 7.16 -51.93 -0.37 1.00 16 4 C -0.52 -13.68 8.64 -34.44 -0.30 -13.98 16 5 H 0.07 1.75 6.39 -52.49 -0.34 1.41 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -24.39 11.32 55.43 0.63 -23.76 16 8 Si 0.91 20.19 29.54 -169.99 -5.02 15.17 16 9 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 10 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 11 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 12 O -0.35 -7.71 5.10 -40.96 -0.21 -7.92 16 13 C 0.53 11.51 7.33 34.10 0.25 11.76 16 14 O -0.51 -12.30 16.18 -19.35 -0.31 -12.62 16 15 C -0.06 -1.07 6.43 -82.37 -0.53 -1.60 16 16 C 0.06 0.99 11.68 -17.34 -0.20 0.78 16 17 N -0.50 -8.22 11.19 -10.34 -0.12 -8.34 16 18 C 0.22 3.22 7.63 -155.32 -1.19 2.03 16 19 N -0.42 -6.61 2.94 -102.75 -0.30 -6.91 16 20 C 0.13 1.77 3.32 -67.82 -0.23 1.54 16 21 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 22 C -0.18 -2.82 7.91 37.16 0.29 -2.53 16 23 C -0.13 -1.23 5.02 -26.51 -0.13 -1.37 16 24 C -0.13 -1.00 5.96 -26.45 -0.16 -1.16 16 25 C -0.03 -0.32 6.33 -27.47 -0.17 -0.49 16 26 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.10 2.63 6.07 -51.93 -0.32 2.31 16 28 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 30 H 0.18 2.86 8.06 -52.49 -0.42 2.44 16 31 H 0.13 2.45 3.37 -52.58 -0.18 2.27 16 32 H 0.06 0.83 7.74 -51.93 -0.40 0.43 16 33 H 0.06 1.02 7.20 -51.93 -0.37 0.65 16 34 H 0.08 0.72 8.09 -51.93 -0.42 0.30 16 35 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.59 8.12 -51.93 -0.42 0.17 16 38 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 312.56 15.07 4.71 4.71 Total: -1.00 -30.24 312.56 -8.14 -38.37 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -5.33 Total: 2.84 kcal Atomic # 6 Polarization: 0.63 SS G_CDS: -2.18 Total: -1.55 kcal Atomic # 7 Polarization: -39.22 SS G_CDS: 0.21 Total: -39.01 kcal Atomic # 8 Polarization: -20.02 SS G_CDS: -0.52 Total: -20.54 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.24 -8.14 -38.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845467636.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.356 kcal (2) G-P(sol) polarization free energy of solvation -30.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds