Wall clock time and date at job start Tue Mar 31 2020 00:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47098 * 2 1 4 4 C 1.50695 * 109.47131 * 120.00191 * 2 1 3 5 5 H 1.08002 * 120.00142 * 119.99669 * 4 2 1 6 6 C 1.37877 * 119.99835 * 299.99962 * 4 2 1 7 7 N 1.31517 * 120.00314 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00002 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47012 * 60.00078 * 8 6 4 10 10 H 1.48498 * 109.47164 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.47127 * 300.00057 * 8 6 4 12 12 O 1.45198 * 109.46838 * 240.00057 * 2 1 3 13 13 C 1.34872 * 117.00323 * 90.00192 * 12 2 1 14 14 O 1.21611 * 119.99957 * 0.02562 * 13 12 2 15 15 C 1.46583 * 120.00417 * 179.71891 * 13 12 2 16 16 C 1.36928 * 126.92454 * 172.63542 * 15 13 12 17 17 N 1.33415 * 107.82189 * 179.91853 * 16 15 13 18 18 C 1.30582 * 109.70603 * 0.39501 * 17 16 15 19 19 N 1.34851 * 109.00412 * 359.72144 * 18 17 16 20 20 C 1.46439 * 124.99974 * 180.02562 * 19 18 17 21 21 H 1.09001 * 109.57940 * 257.10468 * 20 19 18 22 22 C 1.53002 * 109.57856 * 136.84079 * 20 19 18 23 23 C 1.53266 * 108.82037 * 17.04184 * 20 19 18 24 24 C 1.53154 * 109.43919 * 309.78188 * 23 20 19 25 25 C 1.51119 * 127.07927 * 179.65221 * 18 17 16 26 26 H 1.09000 * 109.47518 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47447 * 300.00283 * 1 2 3 28 28 H 1.09005 * 109.47200 * 60.00181 * 1 2 3 29 29 H 0.96994 * 120.00341 * 180.02562 * 7 6 4 30 30 H 1.08000 * 126.08727 * 0.02562 * 16 15 13 31 31 H 1.09006 * 109.46610 * 98.36855 * 22 20 19 32 32 H 1.09000 * 109.47039 * 218.36159 * 22 20 19 33 33 H 1.08995 * 109.47414 * 338.37368 * 22 20 19 34 34 H 1.09000 * 109.47294 * 69.77600 * 23 20 19 35 35 H 1.09002 * 109.47129 * 189.78947 * 23 20 19 36 36 H 1.09003 * 109.51145 * 189.25526 * 24 23 20 37 37 H 1.08997 * 109.51251 * 309.40805 * 24 23 20 38 38 H 1.09002 * 109.70080 * 76.41016 * 25 18 17 39 39 H 1.09000 * 109.70626 * 315.79247 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3213 -1.1204 4.0079 9 1 3.8063 -1.1210 4.0081 10 1 1.8269 -0.4200 5.2204 11 1 1.8257 -2.5203 4.0076 12 8 2.0139 -0.6845 -1.1856 13 6 2.2180 0.0676 -2.2864 14 8 1.9978 1.2631 -2.2554 15 6 2.7118 -0.5550 -3.5182 16 6 2.8354 0.0369 -4.7467 17 7 3.3229 -0.8734 -5.5914 18 6 3.5038 -2.0041 -4.9638 19 7 3.1388 -1.8540 -3.6744 20 6 3.1995 -2.9049 -2.6564 21 1 2.1990 -3.2992 -2.4783 22 6 3.7620 -2.3273 -1.3560 23 6 4.1150 -4.0270 -3.1582 24 6 3.6948 -4.4329 -4.5739 25 6 4.0314 -3.2951 -5.5460 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 0.7095 1.1618 3.4843 30 1 2.5846 1.0592 -4.9884 31 1 2.9410 -2.0864 -0.6805 32 1 4.4162 -3.0612 -0.8855 33 1 4.3291 -1.4227 -1.5756 34 1 5.1467 -3.6755 -3.1719 35 1 4.0329 -4.8873 -2.4939 36 1 4.2321 -5.3344 -4.8687 37 1 2.6220 -4.6245 -4.5944 38 1 5.1118 -3.2264 -5.6730 39 1 3.5587 -3.4839 -6.5098 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000845467636.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:14:19 Heat of formation + Delta-G solvation = -48.680112 kcal Electronic energy + Delta-G solvation = -22631.763677 eV Core-core repulsion = 19346.608496 eV Total energy + Delta-G solvation = -3285.155181 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.61774 -41.04466 -38.26947 -37.42268 -35.40074 -34.72679 -31.83900 -31.74184 -30.43156 -28.12518 -27.45281 -25.18004 -23.93206 -23.35382 -22.54047 -21.17900 -20.25895 -19.21450 -18.49916 -17.79943 -17.16230 -16.77556 -16.57349 -16.24522 -15.62742 -15.40865 -15.22174 -14.88859 -14.43050 -14.22791 -14.04109 -13.83009 -13.59056 -13.30402 -13.16484 -12.89341 -12.78981 -12.48022 -12.36215 -12.16705 -12.03676 -11.92586 -11.88622 -11.65308 -11.42813 -11.20366 -10.76793 -10.69642 -10.58862 -9.62600 -8.27110 -6.43721 0.04455 1.42101 1.46034 1.50042 1.54403 1.62633 1.89772 2.06077 2.40783 3.04550 3.20636 3.51876 3.53591 3.71053 3.88877 4.12677 4.19164 4.32481 4.34646 4.47843 4.52652 4.67004 4.76938 4.77221 4.81420 4.87306 4.93342 5.01287 5.06105 5.09125 5.16711 5.32333 5.35637 5.39810 5.56412 5.73519 5.86071 6.03283 6.07337 6.59306 6.75167 6.87104 7.27099 8.80739 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.023331 B = 0.005584 C = 0.004720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.828118 B = 5013.423873 C = 5930.221927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.215 3.785 3 H 0.004 0.996 4 C -0.538 4.538 5 H 0.081 0.919 6 C 0.015 3.985 7 N -0.919 5.919 8 Si 0.980 3.020 9 H -0.268 1.268 10 H -0.283 1.283 11 H -0.260 1.260 12 O -0.334 6.334 13 C 0.525 3.475 14 O -0.544 6.544 15 C -0.094 4.094 16 C 0.064 3.936 17 N -0.518 5.518 18 C 0.242 3.758 19 N -0.423 5.423 20 C 0.125 3.875 21 H 0.095 0.905 22 C -0.173 4.173 23 C -0.125 4.125 24 C -0.121 4.121 25 C -0.036 4.036 26 H 0.047 0.953 27 H 0.081 0.919 28 H 0.017 0.983 29 H 0.269 0.731 30 H 0.189 0.811 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.030 0.970 34 H 0.080 0.920 35 H 0.117 0.883 36 H 0.121 0.879 37 H 0.070 0.930 38 H 0.113 0.887 39 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.780 -14.668 -12.120 20.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.162 3.838 3 H 0.022 0.978 4 C -0.576 4.576 5 H 0.099 0.901 6 C -0.184 4.184 7 N -0.557 5.557 8 Si 0.804 3.196 9 H -0.193 1.193 10 H -0.209 1.209 11 H -0.185 1.185 12 O -0.250 6.250 13 C 0.371 3.629 14 O -0.436 6.436 15 C -0.208 4.208 16 C -0.091 4.091 17 N -0.237 5.237 18 C -0.020 4.020 19 N -0.105 5.105 20 C 0.024 3.976 21 H 0.113 0.887 22 C -0.230 4.230 23 C -0.162 4.162 24 C -0.158 4.158 25 C -0.074 4.074 26 H 0.066 0.934 27 H 0.100 0.900 28 H 0.036 0.964 29 H 0.078 0.922 30 H 0.206 0.794 31 H 0.113 0.887 32 H 0.110 0.890 33 H 0.049 0.951 34 H 0.098 0.902 35 H 0.135 0.865 36 H 0.139 0.861 37 H 0.088 0.912 38 H 0.131 0.869 39 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 6.772 -14.207 -12.555 20.133 hybrid contribution -0.438 0.860 1.899 2.130 sum 6.334 -13.347 -10.656 18.215 Atomic orbital electron populations 1.22003 0.97115 1.00365 1.00599 1.20400 0.91811 0.92292 0.79294 0.97836 1.21291 1.33227 1.13921 0.89124 0.90117 1.25840 0.94766 0.95625 1.02213 1.70027 1.36714 1.23770 1.25150 0.85267 0.78751 0.78752 0.76873 1.19330 1.20878 1.18476 1.86906 1.75911 1.41349 1.20807 1.20114 0.74230 0.84826 0.83700 1.90807 1.51256 1.16829 1.84690 1.19992 1.17711 0.87983 0.95137 1.22866 0.99050 1.00215 0.86959 1.70057 1.20921 1.00069 1.32625 1.24576 0.98874 0.98100 0.80452 1.45839 1.45029 1.08598 1.11077 1.22035 1.02468 0.86429 0.86665 0.88740 1.22662 1.03073 1.00226 0.97039 1.22132 0.98676 0.96762 0.98665 1.21763 1.03056 0.98548 0.92464 1.20660 1.02744 0.84132 0.99879 0.93406 0.90048 0.96391 0.92168 0.79422 0.88748 0.89010 0.95072 0.90175 0.86505 0.86118 0.91158 0.86918 0.86663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.35 9.33 71.98 0.67 -6.68 16 2 C 0.22 11.55 2.57 29.85 0.08 11.63 16 3 H 0.00 0.23 7.16 -2.39 -0.02 0.22 16 4 C -0.54 -28.75 8.64 25.60 0.22 -28.53 16 5 H 0.08 4.04 6.39 -2.91 -0.02 4.02 16 6 C 0.02 0.81 5.30 84.65 0.45 1.26 16 7 N -0.92 -52.01 11.32 21.45 0.24 -51.77 16 8 Si 0.98 41.21 29.54 68.60 2.03 43.24 16 9 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 10 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 11 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 12 O -0.33 -15.60 5.10 -57.85 -0.30 -15.89 16 13 C 0.52 24.15 7.33 70.00 0.51 24.66 16 14 O -0.54 -28.28 16.18 19.47 0.32 -27.97 16 15 C -0.09 -3.60 6.43 40.10 0.26 -3.34 16 16 C 0.06 2.25 11.68 84.14 0.98 3.24 16 17 N -0.52 -16.46 11.19 -186.62 -2.09 -18.55 16 18 C 0.24 6.44 7.63 138.30 1.06 7.49 16 19 N -0.42 -12.91 2.94 -478.98 -1.41 -14.32 16 20 C 0.13 3.17 3.32 45.09 0.15 3.31 16 21 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 22 C -0.17 -5.38 7.91 71.98 0.57 -4.81 16 23 C -0.12 -1.82 5.02 30.73 0.15 -1.66 16 24 C -0.12 -1.27 5.96 30.78 0.18 -1.09 16 25 C -0.04 -0.51 6.33 30.11 0.19 -0.32 16 26 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 27 H 0.08 4.49 6.07 -2.39 -0.01 4.48 16 28 H 0.02 0.86 8.14 -2.38 -0.02 0.84 16 29 H 0.27 14.37 8.31 -92.71 -0.77 13.60 16 30 H 0.19 6.12 8.06 -2.91 -0.02 6.10 16 31 H 0.09 3.65 3.37 -12.76 -0.04 3.60 16 32 H 0.09 2.24 7.74 -2.39 -0.02 2.23 16 33 H 0.03 1.11 7.20 -2.39 -0.02 1.09 16 34 H 0.08 1.16 8.09 -2.39 -0.02 1.14 16 35 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.12 0.51 8.14 -2.39 -0.02 0.49 16 37 H 0.07 0.82 8.12 -2.39 -0.02 0.80 16 38 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -69.31 312.56 5.29 -64.02 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: 1.02 Total: 16.07 kcal Atomic # 6 Polarization: -0.32 SS G_CDS: 5.48 Total: 5.16 kcal Atomic # 7 Polarization: -81.38 SS G_CDS: -3.25 Total: -84.63 kcal Atomic # 8 Polarization: -43.88 SS G_CDS: 0.02 Total: -43.86 kcal Atomic # 14 Polarization: 41.21 SS G_CDS: 2.03 Total: 43.24 kcal Total: -69.31 5.29 -64.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845467636.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.341 kcal (2) G-P(sol) polarization free energy of solvation -69.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds