Wall clock time and date at job start Tue Mar 31 2020 00:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08997 * 109.46933 * 2 1 4 4 C 1.53003 * 109.46605 * 119.99776 * 2 1 3 5 5 C 1.50700 * 109.47328 * 294.99701 * 4 2 1 6 6 O 1.20835 * 119.99600 * 0.02562 * 5 4 2 7 7 O 1.34228 * 120.00368 * 180.02562 * 5 4 2 8 8 C 1.45198 * 117.00205 * 180.02562 * 7 5 4 9 9 C 1.52991 * 109.47075 * 179.97438 * 8 7 5 10 10 C 1.50701 * 115.55544 * 294.88682 * 9 8 7 11 11 H 1.07995 * 119.99892 * 95.15843 * 10 9 8 12 12 C 1.37875 * 119.99625 * 274.89404 * 10 9 8 13 13 N 1.31516 * 120.00645 * 6.38641 * 12 10 9 14 14 Si 1.86804 * 119.99966 * 186.39037 * 12 10 9 15 15 H 1.48497 * 109.46911 * 59.99497 * 14 12 10 16 16 H 1.48501 * 109.47278 * 179.97438 * 14 12 10 17 17 H 1.48507 * 109.46934 * 299.99733 * 14 12 10 18 18 C 1.52999 * 117.50107 * 80.55676 * 9 8 7 19 19 C 1.53002 * 117.49851 * 149.21518 * 9 8 7 20 20 N 1.46500 * 109.47353 * 239.99518 * 2 1 3 21 21 C 1.36873 * 126.39564 * 119.71292 * 20 2 1 22 22 C 1.34671 * 106.81922 * 179.84680 * 21 20 2 23 23 N 1.34129 * 108.01726 * 0.42052 * 22 21 20 24 24 C 1.30495 * 109.25622 * 359.73346 * 23 22 21 25 25 H 1.08988 * 109.47193 * 300.00391 * 1 2 3 26 26 H 1.08994 * 109.46538 * 60.00524 * 1 2 3 27 27 H 1.08997 * 109.46933 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46971 * 175.00304 * 4 2 1 29 29 H 1.08998 * 109.47214 * 55.00319 * 4 2 1 30 30 H 1.09001 * 109.46840 * 59.99792 * 8 7 5 31 31 H 1.09000 * 109.47129 * 299.99899 * 8 7 5 32 32 H 0.96998 * 120.00543 * 180.02562 * 13 12 10 33 33 H 1.08998 * 117.50651 * 215.00344 * 18 9 8 34 34 H 1.09007 * 117.49575 * 0.02562 * 18 9 8 35 35 H 1.09004 * 117.50100 * 359.97438 * 19 9 8 36 36 H 1.09000 * 117.49932 * 144.97481 * 19 9 8 37 37 H 1.08004 * 126.59158 * 359.97438 * 21 20 2 38 38 H 1.07993 * 125.99371 * 180.12334 * 22 21 20 39 39 H 1.08000 * 125.65323 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6413 0.0571 2.4766 6 8 1.0133 1.0833 2.3636 7 8 1.9838 -0.3894 3.6953 8 6 1.5657 0.4111 4.8322 9 6 2.0431 -0.2519 6.1258 10 6 1.4301 -1.5938 6.4331 11 1 1.9420 -2.5000 6.1449 12 6 0.2183 -1.6647 7.0869 13 7 -0.4627 -0.5663 7.3307 14 14 -0.4564 -3.3209 7.6266 15 1 0.4972 -3.9608 8.5680 16 1 -1.7638 -3.1261 8.3033 17 1 -0.6386 -4.1923 6.4380 18 6 3.4997 -0.0298 6.5377 19 6 2.3722 0.6618 7.3081 20 7 2.0185 -0.6907 -1.1961 21 6 2.8041 -0.1539 -2.1800 22 6 3.0190 -1.1298 -3.0829 23 7 2.3744 -2.2297 -2.6663 24 6 1.7728 -1.9742 -1.5368 25 1 -0.3633 0.5138 0.8898 26 1 -0.3632 0.5137 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 3.1263 -0.7994 1.2058 29 1 1.6054 -1.7198 1.2952 30 1 0.4784 0.4869 4.8429 31 1 1.9987 1.4083 4.7533 32 1 -1.3150 -0.6161 7.7910 33 1 4.0147 -0.8542 7.0308 34 1 4.1179 0.5891 5.8872 35 1 2.2491 1.7352 7.1642 36 1 2.1450 0.2924 8.3081 37 1 3.1810 0.8573 -2.2230 38 1 3.6036 -1.0408 -3.9865 39 1 1.1768 -2.6731 -0.9687 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000845475796.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:38:21 Heat of formation + Delta-G solvation = -16.702133 kcal Electronic energy + Delta-G solvation = -21320.605160 eV Core-core repulsion = 18036.836649 eV Total energy + Delta-G solvation = -3283.768511 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.04373 -41.47552 -38.76755 -37.32165 -36.44667 -34.02984 -32.12006 -30.27178 -29.70713 -28.28962 -27.21235 -24.55253 -23.01712 -22.38207 -22.04966 -21.20484 -20.86618 -18.95436 -18.39281 -17.66192 -17.50640 -17.07412 -16.60315 -16.15203 -15.88927 -15.31125 -15.17542 -14.72496 -14.68501 -14.27692 -14.23377 -13.83957 -13.70814 -13.51200 -13.02267 -12.90284 -12.78847 -12.59813 -12.40954 -12.33462 -12.09556 -11.70131 -11.63174 -11.36234 -10.91944 -10.78719 -10.64813 -10.49066 -10.09342 -9.42167 -8.14584 -6.25720 1.12709 1.18016 1.42858 1.44240 1.47440 1.51427 2.11911 2.25707 2.42147 3.14811 3.30780 3.40528 3.60709 3.78963 3.89387 4.00957 4.07983 4.13865 4.34192 4.39967 4.44769 4.48041 4.60539 4.64964 4.68591 4.73804 4.84723 4.85307 4.96074 5.13504 5.18285 5.38278 5.46130 5.57560 5.71513 5.74632 5.85737 6.25391 6.35064 6.77648 6.79634 7.16458 7.43387 8.93890 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.022510 B = 0.003869 C = 0.003624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.591049 B = 7234.964530 C = 7723.839242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.156 3.844 3 H 0.115 0.885 4 C -0.116 4.116 5 C 0.459 3.541 6 O -0.538 6.538 7 O -0.347 6.347 8 C 0.130 3.870 9 C 0.005 3.995 10 C -0.506 4.506 11 H 0.055 0.945 12 C 0.026 3.974 13 N -0.908 5.908 14 Si 0.949 3.051 15 H -0.271 1.271 16 H -0.286 1.286 17 H -0.271 1.271 18 C -0.179 4.179 19 C -0.148 4.148 20 N -0.451 5.451 21 C -0.051 4.051 22 C -0.054 4.054 23 N -0.534 5.534 24 C 0.176 3.824 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.127 0.873 29 H 0.128 0.872 30 H 0.043 0.957 31 H 0.051 0.949 32 H 0.261 0.739 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.078 0.922 36 H 0.068 0.932 37 H 0.200 0.800 38 H 0.184 0.816 39 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.155 1.879 -14.601 15.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.053 3.947 3 H 0.133 0.867 4 C -0.154 4.154 5 C 0.303 3.697 6 O -0.429 6.429 7 O -0.263 6.263 8 C 0.057 3.943 9 C 0.004 3.996 10 C -0.544 4.544 11 H 0.073 0.927 12 C -0.175 4.175 13 N -0.546 5.546 14 Si 0.775 3.225 15 H -0.196 1.196 16 H -0.211 1.211 17 H -0.196 1.196 18 C -0.216 4.216 19 C -0.186 4.186 20 N -0.134 5.134 21 C -0.184 4.184 22 C -0.200 4.200 23 N -0.253 5.253 24 C -0.106 4.106 25 H 0.094 0.906 26 H 0.090 0.910 27 H 0.091 0.909 28 H 0.145 0.855 29 H 0.146 0.854 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.102 0.898 34 H 0.110 0.890 35 H 0.097 0.903 36 H 0.087 0.913 37 H 0.217 0.783 38 H 0.201 0.799 39 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 4.740 1.574 -14.788 15.608 hybrid contribution -0.748 0.239 1.091 1.344 sum 3.993 1.813 -13.697 14.382 Atomic orbital electron populations 1.22260 0.92383 1.03814 1.03934 1.21068 0.96155 0.96826 0.80632 0.86702 1.21689 1.05702 1.00820 0.87213 1.23860 0.75921 0.84009 0.85861 1.90612 1.38698 1.25952 1.87686 1.86516 1.71306 1.53250 1.15213 1.22503 0.98293 0.91025 0.82525 1.18884 0.94344 0.96142 0.90205 1.20609 1.04868 0.91150 1.37780 0.92679 1.25675 0.96796 0.99485 0.95497 1.70083 1.14150 1.28829 1.41523 0.85751 0.77467 0.80557 0.78733 1.19580 1.21137 1.19612 1.23020 0.91741 1.02694 1.04147 1.22487 1.03072 0.96468 0.96563 1.45740 1.38165 1.11315 1.18182 1.23237 1.01521 1.02209 0.91430 1.22689 1.05278 0.89513 1.02564 1.70291 1.13662 1.29550 1.11762 1.25353 1.03639 0.86018 0.95611 0.90595 0.91004 0.90879 0.85484 0.85359 0.93819 0.93088 0.92980 0.89780 0.88975 0.90322 0.91335 0.78313 0.79911 0.76272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.28 8.98 71.99 0.65 -2.63 16 2 C 0.16 2.90 2.70 45.00 0.12 3.02 16 3 H 0.11 2.08 7.90 -2.39 -0.02 2.06 16 4 C -0.12 -2.43 5.29 29.85 0.16 -2.27 16 5 C 0.46 14.60 7.68 71.24 0.55 15.15 16 6 O -0.54 -19.18 13.72 21.94 0.30 -18.88 16 7 O -0.35 -13.72 10.16 -51.40 -0.52 -14.24 16 8 C 0.13 5.82 5.29 71.98 0.38 6.20 16 9 C 0.00 0.22 1.61 -52.93 -0.08 0.14 16 10 C -0.51 -26.75 8.77 25.60 0.22 -26.52 16 11 H 0.06 2.91 7.82 -2.91 -0.02 2.89 16 12 C 0.03 1.38 5.39 84.65 0.46 1.84 16 13 N -0.91 -50.37 12.93 21.45 0.28 -50.09 16 14 Si 0.95 41.99 29.54 68.60 2.03 44.02 16 15 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 16 H -0.29 -12.50 7.11 99.48 0.71 -11.79 16 17 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 18 C -0.18 -7.21 9.96 30.62 0.30 -6.90 16 19 C -0.15 -6.58 9.43 30.62 0.29 -6.30 16 20 N -0.45 -8.38 2.62 -506.53 -1.33 -9.70 16 21 C -0.05 -0.89 11.54 83.09 0.96 0.06 16 22 C -0.05 -1.10 11.87 83.52 0.99 -0.11 16 23 N -0.53 -13.35 11.25 -200.32 -2.25 -15.61 16 24 C 0.18 3.63 11.65 180.26 2.10 5.73 16 25 H 0.08 1.91 5.96 -2.39 -0.01 1.89 16 26 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.07 1.29 7.95 -2.39 -0.02 1.27 16 28 H 0.13 2.31 8.14 -2.39 -0.02 2.29 16 29 H 0.13 2.36 8.08 -2.39 -0.02 2.34 16 30 H 0.04 2.22 8.13 -2.39 -0.02 2.20 16 31 H 0.05 2.11 8.09 -2.39 -0.02 2.09 16 32 H 0.26 13.93 8.31 -92.71 -0.77 13.16 16 33 H 0.08 3.33 8.14 -2.39 -0.02 3.31 16 34 H 0.09 3.22 8.14 -2.38 -0.02 3.20 16 35 H 0.08 3.22 8.14 -2.38 -0.02 3.20 16 36 H 0.07 3.27 8.14 -2.39 -0.02 3.25 16 37 H 0.20 2.20 8.06 -2.91 -0.02 2.17 16 38 H 0.18 2.87 8.06 -2.91 -0.02 2.84 16 39 H 0.22 3.36 8.06 -2.91 -0.02 3.34 16 Total: -1.00 -64.69 336.94 6.63 -58.06 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: 1.03 Total: 19.05 kcal Atomic # 6 Polarization: -19.69 SS G_CDS: 7.09 Total: -12.60 kcal Atomic # 7 Polarization: -72.10 SS G_CDS: -3.30 Total: -75.41 kcal Atomic # 8 Polarization: -32.90 SS G_CDS: -0.22 Total: -33.12 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.02 kcal Total: -64.69 6.63 -58.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845475796.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.357 kcal (2) G-P(sol) polarization free energy of solvation -64.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds