Wall clock time and date at job start Tue Mar 31 2020 00:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08997 * 109.47473 * 2 1 4 4 N 1.46507 * 109.47011 * 240.00484 * 2 1 3 5 5 C 1.34772 * 120.00065 * 87.18272 * 4 2 1 6 6 O 1.21586 * 120.00028 * 359.97438 * 5 4 2 7 7 N 1.34780 * 119.99933 * 180.02562 * 5 4 2 8 8 C 1.46499 * 119.99646 * 179.97438 * 7 5 4 9 9 C 1.53003 * 109.46795 * 179.97438 * 8 7 5 10 10 C 1.50704 * 109.47310 * 179.97438 * 9 8 7 11 11 H 1.07998 * 119.99727 * 0.02562 * 10 9 8 12 12 C 1.37872 * 120.00088 * 179.97438 * 10 9 8 13 13 N 1.31519 * 119.99952 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 119.99965 * 180.02562 * 12 10 9 15 15 H 1.48504 * 109.46759 * 60.00401 * 14 12 10 16 16 H 1.48496 * 109.47066 * 180.02562 * 14 12 10 17 17 H 1.48494 * 109.47199 * 300.00309 * 14 12 10 18 18 C 1.50701 * 109.47392 * 120.00634 * 2 1 3 19 19 C 1.38165 * 120.03053 * 92.74143 * 18 2 1 20 20 C 1.38242 * 120.05622 * 180.02562 * 19 18 2 21 21 C 1.38285 * 120.10885 * 0.02562 * 20 19 18 22 22 C 1.38121 * 120.06219 * 359.97386 * 21 20 19 23 23 C 1.38708 * 120.02387 * 272.71818 * 18 2 1 24 24 O 1.35902 * 120.05859 * 0.04130 * 23 18 2 25 25 H 1.09001 * 109.46980 * 299.99495 * 1 2 3 26 26 H 1.09005 * 109.47571 * 59.99390 * 1 2 3 27 27 H 1.08997 * 109.47473 * 180.02562 * 1 2 3 28 28 H 0.97003 * 119.99910 * 267.18710 * 4 2 1 29 29 H 0.96998 * 119.99578 * 359.97438 * 7 5 4 30 30 H 1.08996 * 109.47742 * 299.99635 * 8 7 5 31 31 H 1.09002 * 109.47187 * 60.00191 * 8 7 5 32 32 H 1.09001 * 109.47678 * 300.00152 * 9 8 7 33 33 H 1.09008 * 109.47079 * 60.00579 * 9 8 7 34 34 H 0.97002 * 119.99422 * 179.97438 * 13 12 10 35 35 H 1.08004 * 119.97172 * 359.97438 * 19 18 2 36 36 H 1.07999 * 119.94508 * 179.97438 * 20 19 18 37 37 H 1.08006 * 119.96964 * 179.70579 * 21 20 19 38 38 H 1.08001 * 120.03208 * 179.97438 * 22 21 20 39 39 H 0.96701 * 113.99274 * 90.00051 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0182 -0.6905 -1.1963 5 6 2.1888 -0.0081 -2.3459 6 8 1.9369 1.1805 -2.3903 7 7 2.6375 -0.6435 -3.4465 8 6 2.8223 0.0982 -4.6963 9 6 3.3368 -0.8503 -5.7810 10 6 3.5264 -0.0875 -7.0668 11 1 3.3027 0.9683 -7.1062 12 6 3.9863 -0.7373 -8.1924 13 7 4.2592 -2.0230 -8.1442 14 14 4.2219 0.2084 -9.7861 15 1 5.2074 1.2987 -9.5734 16 1 4.7211 -0.7123 -10.8388 17 1 2.9241 0.7903 -10.2128 18 6 2.0323 -0.7105 1.2304 19 6 2.3168 -2.0617 1.1809 20 6 2.7772 -2.7141 2.3093 21 6 2.9537 -2.0167 3.4903 22 6 2.6708 -0.6659 3.5451 23 6 2.2100 -0.0084 2.4134 24 8 1.9306 1.3206 2.4647 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 2.2188 -1.6390 -1.1609 29 1 2.8381 -1.5919 -3.4111 30 1 1.8699 0.5260 -5.0092 31 1 3.5463 0.8981 -4.5404 32 1 4.2893 -1.2779 -5.4679 33 1 2.6131 -1.6505 -5.9370 34 1 4.5824 -2.4802 -8.9363 35 1 2.1785 -2.6088 0.2600 36 1 2.9986 -3.7704 2.2687 37 1 3.3090 -2.5297 4.3719 38 1 2.8084 -0.1218 4.4678 39 1 1.0179 1.5211 2.7137 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000868492073.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:26:56 Heat of formation + Delta-G solvation = -83.142664 kcal Electronic energy + Delta-G solvation = -20782.975241 eV Core-core repulsion = 17496.325652 eV Total energy + Delta-G solvation = -3286.649589 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.49892 -40.52410 -37.67629 -37.04715 -36.21411 -34.83693 -32.78556 -31.22047 -30.89819 -29.81902 -26.74210 -24.89146 -23.79253 -22.97325 -22.21771 -21.43515 -19.91509 -18.94927 -18.42230 -17.78465 -16.86960 -16.65120 -16.54085 -16.38008 -15.99526 -15.35664 -15.31122 -15.11309 -15.00276 -14.39856 -14.26833 -13.99077 -13.30675 -13.21976 -13.14458 -12.92836 -12.82477 -12.71108 -12.52999 -12.22990 -12.03070 -11.68114 -11.51729 -11.37328 -11.20521 -10.59869 -10.41905 -9.87292 -9.77754 -9.50331 -8.23575 -6.33891 0.26250 0.35008 1.42133 1.44780 1.52461 1.72431 2.14716 2.41765 2.69427 3.11177 3.30611 3.34357 3.53206 3.91985 4.14351 4.27811 4.30563 4.46580 4.49735 4.52296 4.55997 4.68859 4.86292 4.88937 4.90779 5.00224 5.20997 5.29746 5.34396 5.42411 5.51256 5.54130 5.59749 5.63416 5.79023 5.90576 6.02167 6.17614 6.78933 6.84449 7.09688 7.35311 7.57819 8.88205 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.034325 B = 0.002889 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.542255 B = 9690.986377 C =10142.720351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.205 3.795 3 H 0.073 0.927 4 N -0.729 5.729 5 C 0.699 3.301 6 O -0.637 6.637 7 N -0.733 5.733 8 C 0.160 3.840 9 C 0.025 3.975 10 C -0.548 4.548 11 H 0.059 0.941 12 C 0.008 3.992 13 N -0.926 5.926 14 Si 0.965 3.035 15 H -0.269 1.269 16 H -0.280 1.280 17 H -0.268 1.268 18 C -0.129 4.129 19 C -0.108 4.108 20 C -0.126 4.126 21 C -0.104 4.104 22 C -0.150 4.150 23 C 0.103 3.897 24 O -0.510 6.510 25 H 0.084 0.916 26 H 0.043 0.957 27 H 0.070 0.930 28 H 0.407 0.593 29 H 0.407 0.593 30 H 0.044 0.956 31 H 0.041 0.959 32 H 0.008 0.992 33 H 0.010 0.990 34 H 0.266 0.734 35 H 0.136 0.864 36 H 0.150 0.850 37 H 0.153 0.847 38 H 0.144 0.856 39 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.195 -3.510 25.891 26.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.100 3.900 3 H 0.091 0.909 4 N -0.388 5.388 5 C 0.399 3.601 6 O -0.519 6.519 7 N -0.387 5.387 8 C 0.036 3.964 9 C -0.012 4.012 10 C -0.587 4.587 11 H 0.077 0.923 12 C -0.191 4.191 13 N -0.566 5.566 14 Si 0.789 3.211 15 H -0.194 1.194 16 H -0.205 1.205 17 H -0.193 1.193 18 C -0.130 4.130 19 C -0.126 4.126 20 C -0.144 4.144 21 C -0.122 4.122 22 C -0.168 4.168 23 C 0.058 3.942 24 O -0.323 6.323 25 H 0.102 0.898 26 H 0.062 0.938 27 H 0.089 0.911 28 H 0.246 0.754 29 H 0.242 0.758 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.027 0.973 33 H 0.028 0.972 34 H 0.075 0.925 35 H 0.154 0.846 36 H 0.168 0.832 37 H 0.171 0.829 38 H 0.162 0.838 39 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -5.786 -2.505 25.569 26.335 hybrid contribution -0.081 -0.366 -0.950 1.021 sum -5.867 -2.871 24.618 25.470 Atomic orbital electron populations 1.22088 0.93265 1.02957 1.02445 1.19405 0.94579 0.95647 0.80375 0.90904 1.45159 1.71884 1.13045 1.08672 1.16144 0.78090 0.84839 0.81052 1.90858 1.60083 1.15745 1.85191 1.45211 1.70401 1.13426 1.09695 1.21080 0.99026 0.94500 0.81776 1.19118 0.95529 0.94444 0.92150 1.21444 1.44943 0.96177 0.96103 0.92323 1.25865 0.94715 0.95871 1.02663 1.70054 1.45606 1.10104 1.30825 0.85499 0.78908 0.78386 0.78268 1.19402 1.20503 1.19314 1.20255 1.03077 0.94985 0.94672 1.21042 0.98942 0.92847 0.99801 1.21484 0.99044 1.01505 0.92352 1.21428 0.98163 0.93486 0.99116 1.21655 1.01467 0.95531 0.98148 1.18414 1.00043 0.83175 0.92584 1.84797 1.36104 1.19527 1.91916 0.89758 0.93801 0.91097 0.75447 0.75795 0.93743 0.94021 0.97337 0.97186 0.92518 0.84632 0.83204 0.82946 0.83827 0.73376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.08 9.49 71.98 0.68 -2.40 16 2 C 0.21 5.02 2.57 44.24 0.11 5.14 16 3 H 0.07 2.28 6.98 -2.39 -0.02 2.27 16 4 N -0.73 -19.37 4.98 -461.42 -2.30 -21.67 16 5 C 0.70 25.56 8.55 179.05 1.53 27.09 16 6 O -0.64 -28.83 15.97 -3.99 -0.06 -28.89 16 7 N -0.73 -26.79 5.56 -478.53 -2.66 -29.45 16 8 C 0.16 7.20 5.61 86.38 0.48 7.68 16 9 C 0.03 1.29 5.09 29.85 0.15 1.44 16 10 C -0.55 -31.10 9.11 25.60 0.23 -30.86 16 11 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 12 C 0.01 0.43 5.46 84.65 0.46 0.90 16 13 N -0.93 -54.63 13.29 21.45 0.28 -54.35 16 14 Si 0.97 44.02 29.54 68.60 2.03 46.04 16 15 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 16 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 17 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 18 C -0.13 -2.56 5.06 -19.77 -0.10 -2.66 16 19 C -0.11 -1.74 9.22 22.25 0.21 -1.53 16 20 C -0.13 -1.61 10.04 22.28 0.22 -1.39 16 21 C -0.10 -1.26 10.04 22.25 0.22 -1.04 16 22 C -0.15 -2.21 9.99 22.37 0.22 -1.99 16 23 C 0.10 1.93 6.68 22.51 0.15 2.08 16 24 O -0.51 -9.44 12.60 -92.44 -1.16 -10.60 16 25 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.04 1.14 8.14 -2.38 -0.02 1.12 16 27 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.41 8.21 6.33 -92.71 -0.59 7.63 16 29 H 0.41 12.49 8.49 -92.71 -0.79 11.71 16 30 H 0.04 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.01 0.44 8.14 -2.39 -0.02 0.43 16 33 H 0.01 0.52 8.14 -2.38 -0.02 0.50 16 34 H 0.27 14.75 8.31 -92.71 -0.77 13.98 16 35 H 0.14 1.77 6.17 -2.91 -0.02 1.75 16 36 H 0.15 1.17 8.06 -2.91 -0.02 1.15 16 37 H 0.15 1.00 8.06 -2.91 -0.02 0.98 16 38 H 0.14 1.62 8.06 -2.91 -0.02 1.59 16 39 H 0.41 3.60 9.06 -74.06 -0.67 2.93 16 Total: -1.00 -74.44 334.40 -0.25 -74.69 By element: Atomic # 1 Polarization: 22.73 SS G_CDS: -0.96 Total: 21.78 kcal Atomic # 6 Polarization: -2.13 SS G_CDS: 4.59 Total: 2.45 kcal Atomic # 7 Polarization: -100.79 SS G_CDS: -4.67 Total: -105.46 kcal Atomic # 8 Polarization: -38.27 SS G_CDS: -1.23 Total: -39.50 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.04 kcal Total: -74.44 -0.25 -74.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868492073.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.457 kcal (2) G-P(sol) polarization free energy of solvation -74.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds