Wall clock time and date at job start Tue Mar 31 2020 00:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09002 * 109.46916 * 2 1 4 4 N 1.46500 * 109.46837 * 119.99433 * 2 1 3 5 5 C 1.34773 * 120.00431 * 275.00470 * 4 2 1 6 6 O 1.21593 * 119.99894 * 359.97438 * 5 4 2 7 7 N 1.34777 * 120.00097 * 179.72742 * 5 4 2 8 8 C 1.46504 * 119.99854 * 180.27545 * 7 5 4 9 9 C 1.53004 * 109.46928 * 179.97438 * 8 7 5 10 10 C 1.50699 * 109.46843 * 180.02562 * 9 8 7 11 11 H 1.08001 * 119.99981 * 359.97438 * 10 9 8 12 12 C 1.37876 * 119.99570 * 179.97438 * 10 9 8 13 13 N 1.31514 * 120.00351 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99771 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.47118 * 60.00127 * 14 12 10 16 16 H 1.48504 * 109.47036 * 179.97438 * 14 12 10 17 17 H 1.48493 * 109.47374 * 300.00233 * 14 12 10 18 18 C 1.50691 * 109.47321 * 239.99926 * 2 1 3 19 19 C 1.38167 * 120.02512 * 265.00276 * 18 2 1 20 20 C 1.38248 * 120.05227 * 179.97438 * 19 18 2 21 21 C 1.38286 * 120.11381 * 359.97438 * 20 19 18 22 22 C 1.38116 * 120.05323 * 0.02562 * 21 20 19 23 23 C 1.38708 * 120.03123 * 84.72453 * 18 2 1 24 24 O 1.35903 * 120.05452 * 359.97438 * 23 18 2 25 25 H 1.08991 * 109.47246 * 300.00614 * 1 2 3 26 26 H 1.09004 * 109.46414 * 60.00139 * 1 2 3 27 27 H 1.08994 * 109.47203 * 180.02562 * 1 2 3 28 28 H 0.97000 * 119.99456 * 95.00032 * 4 2 1 29 29 H 0.97000 * 119.99736 * 0.26819 * 7 5 4 30 30 H 1.08998 * 109.46968 * 299.99782 * 8 7 5 31 31 H 1.08997 * 109.47198 * 59.99605 * 8 7 5 32 32 H 1.09007 * 109.46621 * 299.99773 * 9 8 7 33 33 H 1.08997 * 109.46991 * 59.99522 * 9 8 7 34 34 H 0.96996 * 120.00389 * 180.02562 * 13 12 10 35 35 H 1.07999 * 119.97678 * 359.97047 * 19 18 2 36 36 H 1.08000 * 119.94084 * 179.97438 * 20 19 18 37 37 H 1.08005 * 119.97302 * 179.97438 * 21 20 19 38 38 H 1.08004 * 120.02354 * 179.97438 * 22 21 20 39 39 H 0.96699 * 113.99466 * 90.00478 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1470 -0.0182 2.3572 6 8 1.8582 1.1617 2.4116 7 7 2.5910 -0.6548 3.4590 8 6 2.7250 0.0746 4.7225 9 6 3.2436 -0.8731 5.8060 10 6 3.3809 -0.1229 7.1057 11 1 3.1244 0.9251 7.1540 12 6 3.8339 -0.7745 8.2331 13 7 4.1458 -2.0508 8.1744 14 14 4.0048 0.1556 9.8441 15 1 2.6808 0.6932 10.2482 16 1 4.5069 -0.7646 10.8961 17 1 4.9620 1.2773 9.6690 18 6 2.0324 -0.7104 -1.2304 19 6 2.3612 -2.0510 -1.1689 20 6 2.8216 -2.7034 -2.2974 21 6 2.9538 -2.0166 -3.4904 22 6 2.6266 -0.6764 -3.5570 23 6 2.1598 -0.0205 -2.4269 24 8 1.8312 1.2967 -2.4915 25 1 -0.3633 0.5139 0.8898 26 1 -0.3632 0.5138 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 2.2490 -1.6317 1.1527 29 1 2.8216 -1.5960 3.4155 30 1 3.4269 0.8985 4.5936 31 1 1.7531 0.4685 5.0195 32 1 2.5412 -1.6967 5.9346 33 1 4.2154 -1.2673 5.5090 34 1 4.4642 -2.5093 8.9677 35 1 2.2584 -2.5896 -0.2385 36 1 3.0784 -3.7512 -2.2473 37 1 3.3142 -2.5284 -4.3706 38 1 2.7304 -0.1404 -4.4889 39 1 2.5654 1.8951 -2.2967 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000868492074.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:26:59 Heat of formation + Delta-G solvation = -57.502286 kcal Electronic energy + Delta-G solvation = -20783.048268 eV Core-core repulsion = 17497.510530 eV Total energy + Delta-G solvation = -3285.537739 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.55319 -39.34776 -36.95407 -35.82995 -34.59966 -32.87899 -31.53121 -30.44919 -29.46574 -28.76365 -24.87971 -23.94833 -22.99621 -21.47913 -20.77766 -20.29277 -18.89887 -17.91761 -16.81393 -16.34216 -15.94532 -15.67253 -15.20648 -15.05958 -14.51602 -14.31766 -14.15328 -13.90400 -13.55045 -13.25971 -12.96937 -12.47799 -12.36256 -12.24293 -12.04911 -11.94873 -11.22545 -11.18393 -11.00482 -10.66696 -10.62751 -10.30178 -9.92527 -9.54673 -9.27568 -9.23134 -9.07956 -8.82649 -8.47503 -8.24493 -6.08245 -4.10904 0.92009 0.98620 3.01192 3.31153 3.32240 3.35865 3.39739 3.60071 3.93547 4.35569 4.40103 4.54928 4.66231 4.71462 5.02330 5.12579 5.25785 5.28802 5.30682 5.49434 5.59231 5.73290 5.82674 6.02974 6.10935 6.15143 6.21178 6.32183 6.41302 6.48244 6.66759 6.79206 7.01340 7.23597 7.37365 7.57705 7.64488 7.90908 8.26875 8.43921 8.93688 9.00961 9.53762 11.03420 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.034787 B = 0.002883 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.715304 B = 9708.649087 C =10175.764018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.209 3.791 3 H 0.097 0.903 4 N -0.751 5.751 5 C 0.700 3.300 6 O -0.597 6.597 7 N -0.739 5.739 8 C 0.140 3.860 9 C 0.013 3.987 10 C -0.521 4.521 11 H 0.059 0.941 12 C 0.059 3.941 13 N -0.895 5.895 14 Si 0.897 3.103 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.276 1.276 18 C -0.111 4.111 19 C -0.101 4.101 20 C -0.123 4.123 21 C -0.108 4.108 22 C -0.142 4.142 23 C 0.115 3.885 24 O -0.495 6.495 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.054 0.946 28 H 0.392 0.608 29 H 0.393 0.607 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.022 0.978 33 H 0.022 0.978 34 H 0.262 0.738 35 H 0.126 0.874 36 H 0.127 0.873 37 H 0.126 0.874 38 H 0.129 0.871 39 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.672 -1.773 -24.041 24.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.103 3.897 3 H 0.115 0.885 4 N -0.409 5.409 5 C 0.400 3.600 6 O -0.475 6.475 7 N -0.392 5.392 8 C 0.017 3.983 9 C -0.024 4.024 10 C -0.560 4.560 11 H 0.077 0.923 12 C -0.143 4.143 13 N -0.534 5.534 14 Si 0.725 3.275 15 H -0.201 1.201 16 H -0.213 1.213 17 H -0.201 1.201 18 C -0.112 4.112 19 C -0.119 4.119 20 C -0.141 4.141 21 C -0.126 4.126 22 C -0.161 4.161 23 C 0.069 3.931 24 O -0.306 6.306 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.073 0.927 28 H 0.227 0.773 29 H 0.225 0.775 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.040 0.960 33 H 0.040 0.960 34 H 0.072 0.928 35 H 0.144 0.856 36 H 0.145 0.855 37 H 0.144 0.856 38 H 0.147 0.853 39 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -3.425 -1.010 -23.967 24.232 hybrid contribution 0.832 -0.381 0.967 1.331 sum -2.594 -1.391 -23.000 23.187 Atomic orbital electron populations 1.22138 0.94167 1.02068 1.02939 1.19350 0.94038 0.96287 0.79992 0.88496 1.45372 1.72917 1.13544 1.09092 1.16044 0.78511 0.85196 0.80289 1.90886 1.57470 1.14455 1.84712 1.45539 1.69992 1.13897 1.09760 1.21593 1.00425 0.95606 0.80631 1.19319 0.96576 0.94607 0.91912 1.21021 1.44507 0.96626 0.93846 0.92260 1.24993 0.95185 0.94917 0.99184 1.69943 1.44686 1.09121 1.29652 0.86569 0.78619 0.79577 0.82746 1.20100 1.21265 1.20104 1.20372 1.01011 0.95064 0.94748 1.20849 0.98850 0.93421 0.98798 1.21170 0.99965 1.00258 0.92733 1.21051 0.99532 0.93921 0.98106 1.21417 1.00496 0.95662 0.98523 1.18187 0.98200 0.84733 0.91930 1.84833 1.39722 1.13428 1.92572 0.91361 0.91376 0.92691 0.77270 0.77458 0.92792 0.92764 0.95985 0.96000 0.92810 0.85634 0.85537 0.85590 0.85305 0.75130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 9.47 37.16 0.35 -1.52 16 2 C 0.21 2.57 2.50 -69.08 -0.17 2.39 16 3 H 0.10 1.35 7.13 -51.93 -0.37 0.98 16 4 N -0.75 -9.87 5.00 -59.81 -0.30 -10.17 16 5 C 0.70 12.38 8.53 -86.92 -0.74 11.64 16 6 O -0.60 -12.83 16.01 5.28 0.08 -12.75 16 7 N -0.74 -13.18 5.56 -65.22 -0.36 -13.55 16 8 C 0.14 3.04 5.61 -4.04 -0.02 3.02 16 9 C 0.01 0.33 5.09 -27.88 -0.14 0.19 16 10 C -0.52 -14.54 9.11 -34.44 -0.31 -14.86 16 11 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 12 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 13 N -0.90 -26.20 13.29 55.43 0.74 -25.46 16 14 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 15 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 16 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 17 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 18 C -0.11 -1.15 5.07 -104.48 -0.53 -1.68 16 19 C -0.10 -0.91 9.23 -39.60 -0.37 -1.28 16 20 C -0.12 -0.96 10.04 -39.56 -0.40 -1.36 16 21 C -0.11 -0.81 10.04 -39.61 -0.40 -1.21 16 22 C -0.14 -1.19 9.99 -39.44 -0.39 -1.58 16 23 C 0.11 1.12 6.68 -39.22 -0.26 0.86 16 24 O -0.49 -4.56 12.65 -19.44 -0.25 -4.81 16 25 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 26 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.39 4.11 6.22 -40.82 -0.25 3.85 16 29 H 0.39 6.00 8.49 -40.82 -0.35 5.65 16 30 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.05 1.23 8.14 -51.93 -0.42 0.80 16 32 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 35 H 0.13 0.96 6.07 -52.49 -0.32 0.64 16 36 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 37 H 0.13 0.65 8.06 -52.48 -0.42 0.23 16 38 H 0.13 0.86 8.06 -52.48 -0.42 0.43 16 39 H 0.39 2.11 9.06 45.56 0.41 2.52 16 LS Contribution 334.38 15.07 5.04 5.04 Total: -1.00 -33.72 334.38 -8.20 -41.92 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -4.65 Total: 7.16 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: -3.48 Total: -3.81 kcal Atomic # 7 Polarization: -49.26 SS G_CDS: 0.07 Total: -49.18 kcal Atomic # 8 Polarization: -17.39 SS G_CDS: -0.16 Total: -17.56 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.72 -8.20 -41.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868492074.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.582 kcal (2) G-P(sol) polarization free energy of solvation -33.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds