Wall clock time and date at job start Tue Mar 31 2020 00:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09002 * 109.46916 * 2 1 4 4 N 1.46500 * 109.46837 * 119.99433 * 2 1 3 5 5 C 1.34773 * 120.00431 * 275.00470 * 4 2 1 6 6 O 1.21593 * 119.99894 * 359.97438 * 5 4 2 7 7 N 1.34777 * 120.00097 * 179.72742 * 5 4 2 8 8 C 1.46504 * 119.99854 * 180.27545 * 7 5 4 9 9 C 1.53004 * 109.46928 * 179.97438 * 8 7 5 10 10 C 1.50699 * 109.46843 * 180.02562 * 9 8 7 11 11 H 1.08001 * 119.99981 * 359.97438 * 10 9 8 12 12 C 1.37876 * 119.99570 * 179.97438 * 10 9 8 13 13 N 1.31514 * 120.00351 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99771 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.47118 * 60.00127 * 14 12 10 16 16 H 1.48504 * 109.47036 * 179.97438 * 14 12 10 17 17 H 1.48493 * 109.47374 * 300.00233 * 14 12 10 18 18 C 1.50691 * 109.47321 * 239.99926 * 2 1 3 19 19 C 1.38167 * 120.02512 * 265.00276 * 18 2 1 20 20 C 1.38248 * 120.05227 * 179.97438 * 19 18 2 21 21 C 1.38286 * 120.11381 * 359.97438 * 20 19 18 22 22 C 1.38116 * 120.05323 * 0.02562 * 21 20 19 23 23 C 1.38708 * 120.03123 * 84.72453 * 18 2 1 24 24 O 1.35903 * 120.05452 * 359.97438 * 23 18 2 25 25 H 1.08991 * 109.47246 * 300.00614 * 1 2 3 26 26 H 1.09004 * 109.46414 * 60.00139 * 1 2 3 27 27 H 1.08994 * 109.47203 * 180.02562 * 1 2 3 28 28 H 0.97000 * 119.99456 * 95.00032 * 4 2 1 29 29 H 0.97000 * 119.99736 * 0.26819 * 7 5 4 30 30 H 1.08998 * 109.46968 * 299.99782 * 8 7 5 31 31 H 1.08997 * 109.47198 * 59.99605 * 8 7 5 32 32 H 1.09007 * 109.46621 * 299.99773 * 9 8 7 33 33 H 1.08997 * 109.46991 * 59.99522 * 9 8 7 34 34 H 0.96996 * 120.00389 * 180.02562 * 13 12 10 35 35 H 1.07999 * 119.97678 * 359.97047 * 19 18 2 36 36 H 1.08000 * 119.94084 * 179.97438 * 20 19 18 37 37 H 1.08005 * 119.97302 * 179.97438 * 21 20 19 38 38 H 1.08004 * 120.02354 * 179.97438 * 22 21 20 39 39 H 0.96699 * 113.99466 * 90.00478 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1470 -0.0182 2.3572 6 8 1.8582 1.1617 2.4116 7 7 2.5910 -0.6548 3.4590 8 6 2.7250 0.0746 4.7225 9 6 3.2436 -0.8731 5.8060 10 6 3.3809 -0.1229 7.1057 11 1 3.1244 0.9251 7.1540 12 6 3.8339 -0.7745 8.2331 13 7 4.1458 -2.0508 8.1744 14 14 4.0048 0.1556 9.8441 15 1 2.6808 0.6932 10.2482 16 1 4.5069 -0.7646 10.8961 17 1 4.9620 1.2773 9.6690 18 6 2.0324 -0.7104 -1.2304 19 6 2.3612 -2.0510 -1.1689 20 6 2.8216 -2.7034 -2.2974 21 6 2.9538 -2.0166 -3.4904 22 6 2.6266 -0.6764 -3.5570 23 6 2.1598 -0.0205 -2.4269 24 8 1.8312 1.2967 -2.4915 25 1 -0.3633 0.5139 0.8898 26 1 -0.3632 0.5138 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 2.2490 -1.6317 1.1527 29 1 2.8216 -1.5960 3.4155 30 1 3.4269 0.8985 4.5936 31 1 1.7531 0.4685 5.0195 32 1 2.5412 -1.6967 5.9346 33 1 4.2154 -1.2673 5.5090 34 1 4.4642 -2.5093 8.9677 35 1 2.2584 -2.5896 -0.2385 36 1 3.0784 -3.7512 -2.2473 37 1 3.3142 -2.5284 -4.3706 38 1 2.7304 -0.1404 -4.4889 39 1 2.5654 1.8951 -2.2967 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000868492074.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:26:59 Heat of formation + Delta-G solvation = -82.152479 kcal Electronic energy + Delta-G solvation = -20784.117181 eV Core-core repulsion = 17497.510530 eV Total energy + Delta-G solvation = -3286.606651 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.50178 -40.51425 -37.66546 -37.04414 -36.20652 -34.83213 -32.77979 -31.22463 -30.91233 -29.78584 -26.74144 -24.92701 -23.79324 -22.95739 -22.18418 -21.43934 -19.93914 -18.94235 -18.41236 -17.76069 -16.76314 -16.65481 -16.56290 -16.40401 -16.12919 -15.36282 -15.25499 -15.09633 -14.85154 -14.50890 -14.26423 -13.99688 -13.34796 -13.20916 -13.08641 -12.92645 -12.83062 -12.73098 -12.52798 -12.22633 -12.04388 -11.67571 -11.51259 -11.37270 -11.19634 -10.59545 -10.42097 -9.87670 -9.76502 -9.51205 -8.23247 -6.33509 0.26765 0.34754 1.42459 1.44941 1.52613 1.71724 2.15216 2.41964 2.68552 3.11562 3.31191 3.33891 3.53378 3.91561 4.13721 4.25422 4.29967 4.46965 4.49864 4.53162 4.55835 4.69847 4.86275 4.88032 4.90208 4.98992 5.19575 5.29881 5.33982 5.42113 5.51741 5.54020 5.60452 5.63368 5.79506 5.89872 6.02302 6.18031 6.79462 6.80705 7.10007 7.35724 7.58116 8.88500 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.034787 B = 0.002883 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.715304 B = 9708.649087 C =10175.764018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.211 3.789 3 H 0.077 0.923 4 N -0.730 5.730 5 C 0.700 3.300 6 O -0.636 6.636 7 N -0.733 5.733 8 C 0.161 3.839 9 C 0.025 3.975 10 C -0.548 4.548 11 H 0.059 0.941 12 C 0.008 3.992 13 N -0.926 5.926 14 Si 0.964 3.036 15 H -0.269 1.269 16 H -0.280 1.280 17 H -0.268 1.268 18 C -0.128 4.128 19 C -0.109 4.109 20 C -0.126 4.126 21 C -0.104 4.104 22 C -0.149 4.149 23 C 0.103 3.897 24 O -0.508 6.508 25 H 0.043 0.957 26 H 0.073 0.927 27 H 0.066 0.934 28 H 0.407 0.593 29 H 0.407 0.593 30 H 0.043 0.957 31 H 0.043 0.957 32 H 0.009 0.991 33 H 0.009 0.991 34 H 0.266 0.734 35 H 0.136 0.864 36 H 0.150 0.850 37 H 0.153 0.847 38 H 0.144 0.856 39 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.319 -2.568 -25.128 25.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.106 3.894 3 H 0.095 0.905 4 N -0.388 5.388 5 C 0.400 3.600 6 O -0.518 6.518 7 N -0.387 5.387 8 C 0.036 3.964 9 C -0.013 4.013 10 C -0.586 4.586 11 H 0.077 0.923 12 C -0.191 4.191 13 N -0.566 5.566 14 Si 0.789 3.211 15 H -0.194 1.194 16 H -0.206 1.206 17 H -0.193 1.193 18 C -0.129 4.129 19 C -0.127 4.127 20 C -0.143 4.143 21 C -0.122 4.122 22 C -0.167 4.167 23 C 0.058 3.942 24 O -0.321 6.321 25 H 0.062 0.938 26 H 0.092 0.908 27 H 0.085 0.915 28 H 0.246 0.754 29 H 0.242 0.758 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.027 0.973 33 H 0.027 0.973 34 H 0.075 0.925 35 H 0.153 0.847 36 H 0.168 0.832 37 H 0.171 0.829 38 H 0.162 0.838 39 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -3.066 -1.844 -25.099 25.353 hybrid contribution 0.730 -0.169 1.191 1.407 sum -2.336 -2.013 -23.909 24.107 Atomic orbital electron populations 1.22060 0.94082 1.02506 1.01986 1.19318 0.94101 0.95600 0.80373 0.90514 1.45189 1.71580 1.14147 1.07919 1.16125 0.78134 0.84748 0.81033 1.90861 1.59105 1.16376 1.85443 1.45217 1.70295 1.14409 1.08810 1.21078 0.99216 0.94673 0.81394 1.19118 0.95548 0.94432 0.92171 1.21446 1.44808 0.97008 0.95369 0.92299 1.25859 0.94649 0.95802 1.02793 1.70046 1.45235 1.10517 1.30799 0.85509 0.78889 0.78402 0.78314 1.19379 1.20554 1.19338 1.20229 1.02982 0.95786 0.93948 1.21040 0.98848 0.92933 0.99909 1.21484 0.99153 1.01411 0.92295 1.21430 0.98202 0.93586 0.98987 1.21652 1.00196 0.96280 0.98581 1.18380 0.98585 0.84934 0.92299 1.84787 1.40935 1.13742 1.92627 0.93776 0.90770 0.91497 0.75418 0.75804 0.93820 0.93859 0.97286 0.97260 0.92527 0.84663 0.83209 0.82939 0.83801 0.73571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.56 9.47 71.98 0.68 -2.88 16 2 C 0.21 5.16 2.50 44.24 0.11 5.27 16 3 H 0.08 2.20 7.13 -2.39 -0.02 2.18 16 4 N -0.73 -18.80 5.00 -461.41 -2.31 -21.11 16 5 C 0.70 24.81 8.53 179.06 1.53 26.34 16 6 O -0.64 -27.93 16.01 -4.01 -0.06 -27.99 16 7 N -0.73 -26.13 5.56 -478.52 -2.66 -28.79 16 8 C 0.16 7.07 5.61 86.38 0.48 7.56 16 9 C 0.02 1.26 5.09 29.85 0.15 1.41 16 10 C -0.55 -30.80 9.11 25.60 0.23 -30.56 16 11 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 12 C 0.01 0.44 5.46 84.65 0.46 0.90 16 13 N -0.93 -54.32 13.29 21.45 0.28 -54.04 16 14 Si 0.96 43.71 29.54 68.60 2.03 45.74 16 15 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 16 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 17 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 18 C -0.13 -2.54 5.07 -19.77 -0.10 -2.64 16 19 C -0.11 -1.75 9.23 22.26 0.21 -1.55 16 20 C -0.13 -1.60 10.04 22.28 0.22 -1.37 16 21 C -0.10 -1.25 10.04 22.25 0.22 -1.02 16 22 C -0.15 -2.16 9.99 22.36 0.22 -1.94 16 23 C 0.10 1.91 6.68 22.51 0.15 2.06 16 24 O -0.51 -9.16 12.65 -92.46 -1.17 -10.33 16 25 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.41 7.97 6.22 -92.71 -0.58 7.40 16 29 H 0.41 12.18 8.49 -92.71 -0.79 11.39 16 30 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.01 0.47 8.14 -2.38 -0.02 0.45 16 33 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.27 14.67 8.31 -92.71 -0.77 13.90 16 35 H 0.14 1.77 6.07 -2.91 -0.02 1.76 16 36 H 0.15 1.17 8.06 -2.91 -0.02 1.14 16 37 H 0.15 0.98 8.06 -2.91 -0.02 0.96 16 38 H 0.14 1.58 8.06 -2.91 -0.02 1.56 16 39 H 0.41 4.34 9.06 -74.06 -0.67 3.67 16 Total: -1.00 -72.14 334.38 -0.26 -72.40 By element: Atomic # 1 Polarization: 23.49 SS G_CDS: -0.95 Total: 22.54 kcal Atomic # 6 Polarization: -3.01 SS G_CDS: 4.58 Total: 1.57 kcal Atomic # 7 Polarization: -99.25 SS G_CDS: -4.68 Total: -103.93 kcal Atomic # 8 Polarization: -37.09 SS G_CDS: -1.23 Total: -38.32 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -72.14 -0.26 -72.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868492074.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.750 kcal (2) G-P(sol) polarization free energy of solvation -72.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds