Wall clock time and date at job start Tue Mar 31 2020 00:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.47089 * 2 1 4 4 C 1.50693 * 109.46997 * 120.00023 * 2 1 3 5 5 H 1.08000 * 120.00302 * 114.36344 * 4 2 1 6 6 C 1.37886 * 120.00163 * 294.36365 * 4 2 1 7 7 N 1.31511 * 119.99772 * 156.60071 * 6 4 2 8 8 Si 1.86801 * 119.99628 * 336.87625 * 6 4 2 9 9 H 1.48498 * 109.46677 * 179.72810 * 8 6 4 10 10 H 1.48500 * 109.47133 * 299.72373 * 8 6 4 11 11 H 1.48495 * 109.47357 * 59.72138 * 8 6 4 12 12 O 1.45200 * 109.47139 * 240.00135 * 2 1 3 13 13 C 1.34231 * 117.00204 * 89.99914 * 12 2 1 14 14 O 1.20821 * 119.99993 * 0.02562 * 13 12 2 15 15 C 1.50699 * 119.99878 * 179.97438 * 13 12 2 16 16 C 1.50701 * 109.47120 * 180.02562 * 15 13 12 17 17 C 1.40053 * 126.10104 * 264.69462 * 16 15 13 18 18 N 1.31029 * 108.25504 * 179.80640 * 17 16 15 19 19 N 1.39651 * 108.12443 * 0.42133 * 18 17 16 20 20 C 1.34751 * 126.09917 * 84.99927 * 16 15 13 21 21 C 1.50867 * 127.76519 * 0.07869 * 20 16 15 22 22 C 1.53427 * 108.18322 * 164.20484 * 21 20 16 23 23 C 1.53148 * 109.20010 * 48.53235 * 22 21 20 24 24 C 1.46586 * 127.54647 * 179.80152 * 19 18 17 25 25 H 1.09003 * 109.46967 * 293.11361 * 1 2 3 26 26 H 1.09007 * 109.46955 * 53.10589 * 1 2 3 27 27 H 1.08994 * 109.47507 * 173.10845 * 1 2 3 28 28 H 0.96991 * 120.00582 * 355.20986 * 7 6 4 29 29 H 1.08999 * 109.47289 * 300.00569 * 15 13 12 30 30 H 1.08997 * 109.46869 * 60.00510 * 15 13 12 31 31 H 1.08003 * 125.87198 * 359.95787 * 17 16 15 32 32 H 1.08997 * 109.72781 * 283.85206 * 21 20 16 33 33 H 1.09002 * 109.72085 * 44.51007 * 21 20 16 34 34 H 1.09004 * 109.50394 * 288.62719 * 22 21 20 35 35 H 1.08995 * 109.52648 * 168.45437 * 22 21 20 36 36 H 1.09002 * 109.45723 * 170.55185 * 23 22 21 37 37 H 1.09000 * 109.45584 * 50.60860 * 23 22 21 38 38 H 1.09005 * 109.58529 * 282.44174 * 24 19 18 39 39 H 1.09000 * 109.58432 * 42.71460 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.5760 -1.6385 1.1340 6 6 1.7977 -0.1755 2.4794 7 7 1.8023 -0.9538 3.5395 8 14 1.4656 1.6534 2.6648 9 1 1.2397 1.9727 4.0973 10 1 2.6338 2.4218 2.1647 11 1 0.2595 2.0196 1.8797 12 8 2.0140 -0.6845 -1.1856 13 6 2.2171 0.0640 -2.2812 14 8 1.9982 1.2518 -2.2504 15 6 2.7193 -0.5770 -3.5492 16 6 2.8622 0.4731 -4.6205 17 6 1.9118 0.7874 -5.6000 18 7 2.3934 1.7520 -6.3447 19 7 3.6664 2.0738 -5.8690 20 6 3.9297 1.2733 -4.8105 21 6 5.2111 1.3088 -4.0151 22 6 6.2591 2.0784 -4.8295 23 6 5.6458 3.3904 -5.3277 24 6 4.5850 3.0894 -6.3919 25 1 -0.3633 0.4034 0.9452 26 1 -0.3633 0.6170 -0.8219 27 1 -0.3634 -1.0202 -0.1233 28 1 1.9014 -1.9131 3.4365 29 1 3.6884 -1.0401 -3.3631 30 1 2.0105 -1.3372 -3.8773 31 1 0.9468 0.3174 -5.7193 32 1 5.0404 1.8145 -3.0648 33 1 5.5597 0.2920 -3.8338 34 1 6.5717 1.4757 -5.6823 35 1 7.1220 2.2957 -4.2002 36 1 6.4272 4.0151 -5.7604 37 1 5.1830 3.9151 -4.4919 38 1 5.0686 2.7149 -7.2941 39 1 4.0303 3.9983 -6.6251 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870206014.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:48:04 Heat of formation + Delta-G solvation = -27.284490 kcal Electronic energy + Delta-G solvation = -21790.805375 eV Core-core repulsion = 18506.577978 eV Total energy + Delta-G solvation = -3284.227397 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.60708 -39.45654 -36.70003 -35.81287 -33.40327 -33.17103 -30.82241 -30.36562 -30.00302 -26.53679 -24.89316 -24.38272 -22.45325 -21.85614 -20.45331 -19.51553 -18.79194 -17.69190 -16.86928 -16.38622 -15.92560 -15.40406 -15.11219 -14.70329 -14.51740 -14.20220 -13.91251 -13.75565 -13.18970 -12.92541 -12.83836 -12.61925 -12.28987 -12.05258 -11.85483 -11.49466 -11.40233 -11.30761 -11.25305 -11.15342 -10.56639 -10.50666 -10.11611 -9.98694 -9.67974 -9.63581 -9.16179 -8.96894 -8.31479 -8.28524 -6.63942 -4.21102 1.89416 2.45388 2.74339 2.99362 3.35941 3.41301 3.56921 3.86933 4.17064 4.36550 4.40297 4.45966 4.53678 4.85327 4.95519 5.07590 5.11174 5.16389 5.26155 5.32304 5.38643 5.51536 5.59069 5.64417 5.74604 5.80733 5.89982 5.94734 6.20948 6.27292 6.51086 6.54162 6.67871 6.79325 7.01829 7.20580 7.48071 7.76031 7.90697 8.27456 8.60251 8.89651 9.43479 10.76697 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.024583 B = 0.004426 C = 0.004161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.711829 B = 6325.208339 C = 6727.740100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.198 3.802 3 H 0.035 0.965 4 C -0.613 4.613 5 H 0.069 0.931 6 C 0.046 3.954 7 N -0.887 5.887 8 Si 1.029 2.971 9 H -0.279 1.279 10 H -0.280 1.280 11 H -0.274 1.274 12 O -0.348 6.348 13 C 0.448 3.552 14 O -0.517 6.517 15 C -0.034 4.034 16 C -0.222 4.222 17 C 0.063 3.937 18 N -0.300 5.300 19 N -0.372 5.372 20 C 0.107 3.893 21 C -0.066 4.066 22 C -0.124 4.124 23 C -0.138 4.138 24 C 0.136 3.864 25 H 0.067 0.933 26 H 0.030 0.970 27 H 0.053 0.947 28 H 0.273 0.727 29 H 0.103 0.897 30 H 0.107 0.893 31 H 0.182 0.818 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.069 0.931 35 H 0.080 0.920 36 H 0.090 0.910 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.678 5.035 -19.046 21.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.144 3.856 3 H 0.053 0.947 4 C -0.650 4.650 5 H 0.087 0.913 6 C -0.161 4.161 7 N -0.519 5.519 8 Si 0.856 3.144 9 H -0.204 1.204 10 H -0.206 1.206 11 H -0.200 1.200 12 O -0.264 6.264 13 C 0.291 3.709 14 O -0.407 6.407 15 C -0.073 4.073 16 C -0.233 4.233 17 C -0.123 4.123 18 N -0.120 5.120 19 N -0.155 5.155 20 C -0.020 4.020 21 C -0.104 4.104 22 C -0.162 4.162 23 C -0.177 4.177 24 C 0.015 3.985 25 H 0.085 0.915 26 H 0.049 0.951 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.121 0.879 30 H 0.125 0.875 31 H 0.199 0.801 32 H 0.112 0.888 33 H 0.111 0.889 34 H 0.088 0.912 35 H 0.099 0.901 36 H 0.109 0.891 37 H 0.096 0.904 38 H 0.098 0.902 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 7.196 7.463 -18.926 21.579 hybrid contribution 0.199 -1.600 -0.420 1.666 sum 7.394 5.863 -19.346 21.525 Atomic orbital electron populations 1.22482 0.98198 1.00820 1.00641 1.20797 0.90829 0.93859 0.80149 0.94713 1.21867 1.41983 1.11570 0.89619 0.91276 1.25594 0.93254 1.05872 0.91381 1.70851 1.42915 1.06649 1.31529 0.84251 0.77778 0.75802 0.76587 1.20432 1.20571 1.20020 1.86545 1.75904 1.43115 1.20870 1.23580 0.75061 0.86220 0.86069 1.90580 1.48429 1.17047 1.84623 1.19487 1.03682 0.96167 0.87958 1.19020 0.95863 1.05750 1.02659 1.23766 0.99597 0.95299 0.93670 1.77224 0.93017 1.17961 1.23796 1.48465 1.13087 1.29497 1.24421 1.20680 0.97542 0.92938 0.90849 1.20526 0.89340 1.02600 0.97946 1.21659 0.98293 0.95822 1.00402 1.21971 0.97884 0.98756 0.99063 1.21731 0.89361 0.90308 0.97136 0.91466 0.95124 0.92766 0.91683 0.87903 0.87496 0.80136 0.88839 0.88860 0.91246 0.90109 0.89117 0.90366 0.90170 0.89197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.87 9.27 37.16 0.34 -3.52 16 2 C 0.20 5.09 2.15 -27.89 -0.06 5.03 16 3 H 0.04 0.94 5.73 -51.93 -0.30 0.64 16 4 C -0.61 -17.62 9.11 -34.44 -0.31 -17.94 16 5 H 0.07 2.12 8.06 -52.49 -0.42 1.70 16 6 C 0.05 1.33 5.19 -17.82 -0.09 1.24 16 7 N -0.89 -26.67 13.70 55.43 0.76 -25.91 16 8 Si 1.03 25.23 26.44 -169.99 -4.50 20.73 16 9 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.27 -6.35 6.15 56.52 0.35 -6.00 16 12 O -0.35 -8.11 9.86 -39.26 -0.39 -8.49 16 13 C 0.45 9.01 7.92 36.01 0.29 9.30 16 14 O -0.52 -11.83 15.25 -18.75 -0.29 -12.12 16 15 C -0.03 -0.49 6.10 -29.03 -0.18 -0.67 16 16 C -0.22 -3.29 4.59 -105.18 -0.48 -3.78 16 17 C 0.06 0.91 11.97 -17.21 -0.21 0.71 16 18 N -0.30 -4.61 12.62 30.70 0.39 -4.22 16 19 N -0.37 -5.04 4.04 -56.95 -0.23 -5.27 16 20 C 0.11 1.49 6.59 -82.22 -0.54 0.95 16 21 C -0.07 -0.73 6.02 -27.58 -0.17 -0.89 16 22 C -0.12 -0.98 5.97 -26.43 -0.16 -1.14 16 23 C -0.14 -1.05 5.93 -26.53 -0.16 -1.21 16 24 C 0.14 1.26 7.28 -3.87 -0.03 1.23 16 25 H 0.07 1.60 5.48 -51.93 -0.28 1.32 16 26 H 0.03 0.66 8.14 -51.92 -0.42 0.24 16 27 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 28 H 0.27 8.12 8.73 -40.82 -0.36 7.77 16 29 H 0.10 1.28 7.88 -51.93 -0.41 0.87 16 30 H 0.11 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.18 2.11 8.06 -52.48 -0.42 1.69 16 32 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 33 H 0.09 0.91 7.93 -51.93 -0.41 0.49 16 34 H 0.07 0.50 8.12 -51.93 -0.42 0.08 16 35 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.08 0.71 8.12 -51.93 -0.42 0.29 16 38 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 323.59 15.07 4.88 4.88 Total: -1.00 -34.70 323.59 -6.81 -41.51 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: -5.68 Total: -0.40 kcal Atomic # 6 Polarization: -8.94 SS G_CDS: -1.75 Total: -10.70 kcal Atomic # 7 Polarization: -36.32 SS G_CDS: 0.92 Total: -35.41 kcal Atomic # 8 Polarization: -19.94 SS G_CDS: -0.67 Total: -20.61 kcal Atomic # 14 Polarization: 25.23 SS G_CDS: -4.50 Total: 20.73 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -34.70 -6.81 -41.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870206014.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.227 kcal (2) G-P(sol) polarization free energy of solvation -34.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds