Wall clock time and date at job start Tue Mar 31 2020 00:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.47089 * 2 1 4 4 C 1.50693 * 109.46997 * 120.00023 * 2 1 3 5 5 H 1.08000 * 120.00302 * 114.36344 * 4 2 1 6 6 C 1.37886 * 120.00163 * 294.36365 * 4 2 1 7 7 N 1.31511 * 119.99772 * 156.60071 * 6 4 2 8 8 Si 1.86801 * 119.99628 * 336.87625 * 6 4 2 9 9 H 1.48498 * 109.46677 * 179.72810 * 8 6 4 10 10 H 1.48500 * 109.47133 * 299.72373 * 8 6 4 11 11 H 1.48495 * 109.47357 * 59.72138 * 8 6 4 12 12 O 1.45200 * 109.47139 * 240.00135 * 2 1 3 13 13 C 1.34231 * 117.00204 * 89.99914 * 12 2 1 14 14 O 1.20821 * 119.99993 * 0.02562 * 13 12 2 15 15 C 1.50699 * 119.99878 * 179.97438 * 13 12 2 16 16 C 1.50701 * 109.47120 * 180.02562 * 15 13 12 17 17 C 1.40053 * 126.10104 * 264.69462 * 16 15 13 18 18 N 1.31029 * 108.25504 * 179.80640 * 17 16 15 19 19 N 1.39651 * 108.12443 * 0.42133 * 18 17 16 20 20 C 1.34751 * 126.09917 * 84.99927 * 16 15 13 21 21 C 1.50867 * 127.76519 * 0.07869 * 20 16 15 22 22 C 1.53427 * 108.18322 * 164.20484 * 21 20 16 23 23 C 1.53148 * 109.20010 * 48.53235 * 22 21 20 24 24 C 1.46586 * 127.54647 * 179.80152 * 19 18 17 25 25 H 1.09003 * 109.46967 * 293.11361 * 1 2 3 26 26 H 1.09007 * 109.46955 * 53.10589 * 1 2 3 27 27 H 1.08994 * 109.47507 * 173.10845 * 1 2 3 28 28 H 0.96991 * 120.00582 * 355.20986 * 7 6 4 29 29 H 1.08999 * 109.47289 * 300.00569 * 15 13 12 30 30 H 1.08997 * 109.46869 * 60.00510 * 15 13 12 31 31 H 1.08003 * 125.87198 * 359.95787 * 17 16 15 32 32 H 1.08997 * 109.72781 * 283.85206 * 21 20 16 33 33 H 1.09002 * 109.72085 * 44.51007 * 21 20 16 34 34 H 1.09004 * 109.50394 * 288.62719 * 22 21 20 35 35 H 1.08995 * 109.52648 * 168.45437 * 22 21 20 36 36 H 1.09002 * 109.45723 * 170.55185 * 23 22 21 37 37 H 1.09000 * 109.45584 * 50.60860 * 23 22 21 38 38 H 1.09005 * 109.58529 * 282.44174 * 24 19 18 39 39 H 1.09000 * 109.58432 * 42.71460 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.5760 -1.6385 1.1340 6 6 1.7977 -0.1755 2.4794 7 7 1.8023 -0.9538 3.5395 8 14 1.4656 1.6534 2.6648 9 1 1.2397 1.9727 4.0973 10 1 2.6338 2.4218 2.1647 11 1 0.2595 2.0196 1.8797 12 8 2.0140 -0.6845 -1.1856 13 6 2.2171 0.0640 -2.2812 14 8 1.9982 1.2518 -2.2504 15 6 2.7193 -0.5770 -3.5492 16 6 2.8622 0.4731 -4.6205 17 6 1.9118 0.7874 -5.6000 18 7 2.3934 1.7520 -6.3447 19 7 3.6664 2.0738 -5.8690 20 6 3.9297 1.2733 -4.8105 21 6 5.2111 1.3088 -4.0151 22 6 6.2591 2.0784 -4.8295 23 6 5.6458 3.3904 -5.3277 24 6 4.5850 3.0894 -6.3919 25 1 -0.3633 0.4034 0.9452 26 1 -0.3633 0.6170 -0.8219 27 1 -0.3634 -1.0202 -0.1233 28 1 1.9014 -1.9131 3.4365 29 1 3.6884 -1.0401 -3.3631 30 1 2.0105 -1.3372 -3.8773 31 1 0.9468 0.3174 -5.7193 32 1 5.0404 1.8145 -3.0648 33 1 5.5597 0.2920 -3.8338 34 1 6.5717 1.4757 -5.6823 35 1 7.1220 2.2957 -4.2002 36 1 6.4272 4.0151 -5.7604 37 1 5.1830 3.9151 -4.4919 38 1 5.0686 2.7149 -7.2941 39 1 4.0303 3.9983 -6.6251 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870206014.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:48:04 Heat of formation + Delta-G solvation = -49.050178 kcal Electronic energy + Delta-G solvation = -21791.749206 eV Core-core repulsion = 18506.577978 eV Total energy + Delta-G solvation = -3285.171228 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.62593 -41.14484 -37.72191 -37.36018 -35.34048 -34.43185 -32.50136 -31.42663 -31.17662 -27.65804 -26.98277 -25.17960 -23.74153 -23.11696 -21.80796 -21.01561 -19.89010 -19.66191 -18.55536 -17.46428 -17.23376 -16.81210 -16.49333 -15.72599 -15.47996 -15.38784 -15.07051 -14.97458 -14.79025 -14.59766 -14.35280 -13.95566 -13.72301 -13.47878 -13.26056 -12.95458 -12.76865 -12.52351 -12.10901 -12.01114 -11.96403 -11.90338 -11.85228 -11.60426 -11.51184 -11.33252 -11.06139 -10.52509 -10.16816 -9.38208 -8.92863 -6.51554 0.85333 1.40108 1.41691 1.44434 1.51830 1.62138 1.66892 2.34605 2.36873 2.86096 3.39851 3.61134 3.76552 3.78004 3.89674 4.04056 4.17797 4.29447 4.30679 4.35334 4.44856 4.51856 4.55892 4.61761 4.66778 4.77056 4.79828 4.89278 4.91168 4.97758 5.03373 5.20732 5.23798 5.29734 5.52128 5.65437 5.90259 6.00488 6.08809 6.43750 6.71547 7.01068 7.23120 8.46952 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.024583 B = 0.004426 C = 0.004161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.711829 B = 6325.208339 C = 6727.740100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.197 3.803 3 H 0.026 0.974 4 C -0.624 4.624 5 H 0.035 0.965 6 C 0.007 3.993 7 N -0.911 5.911 8 Si 1.065 2.935 9 H -0.271 1.271 10 H -0.270 1.270 11 H -0.252 1.252 12 O -0.361 6.361 13 C 0.447 3.553 14 O -0.546 6.546 15 C -0.021 4.021 16 C -0.247 4.247 17 C 0.054 3.946 18 N -0.329 5.329 19 N -0.374 5.374 20 C 0.103 3.897 21 C -0.070 4.070 22 C -0.119 4.119 23 C -0.133 4.133 24 C 0.123 3.877 25 H 0.063 0.937 26 H 0.046 0.954 27 H 0.058 0.942 28 H 0.262 0.738 29 H 0.126 0.874 30 H 0.135 0.865 31 H 0.201 0.799 32 H 0.073 0.927 33 H 0.106 0.894 34 H 0.081 0.919 35 H 0.098 0.902 36 H 0.125 0.875 37 H 0.059 0.941 38 H 0.101 0.899 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.422 6.113 -20.666 23.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.143 3.857 3 H 0.043 0.957 4 C -0.661 4.661 5 H 0.054 0.946 6 C -0.195 4.195 7 N -0.544 5.544 8 Si 0.885 3.115 9 H -0.196 1.196 10 H -0.195 1.195 11 H -0.176 1.176 12 O -0.277 6.277 13 C 0.292 3.708 14 O -0.437 6.437 15 C -0.059 4.059 16 C -0.259 4.259 17 C -0.132 4.132 18 N -0.150 5.150 19 N -0.157 5.157 20 C -0.026 4.026 21 C -0.109 4.109 22 C -0.156 4.156 23 C -0.171 4.171 24 C 0.004 3.996 25 H 0.082 0.918 26 H 0.065 0.935 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.144 0.856 30 H 0.153 0.847 31 H 0.217 0.783 32 H 0.092 0.908 33 H 0.124 0.876 34 H 0.100 0.900 35 H 0.117 0.883 36 H 0.143 0.857 37 H 0.078 0.922 38 H 0.119 0.881 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 7.947 8.533 -20.581 23.655 hybrid contribution 0.041 -1.968 0.002 1.969 sum 7.988 6.564 -20.579 23.031 Atomic orbital electron populations 1.22362 0.96458 1.01514 1.01131 1.20544 0.92030 0.92828 0.80322 0.95677 1.21969 1.41904 1.10590 0.91625 0.94628 1.26835 0.92411 1.09178 0.91056 1.70948 1.44837 1.06243 1.32343 0.83792 0.79009 0.71240 0.77434 1.19575 1.19523 1.17609 1.86536 1.76405 1.43575 1.21212 1.24685 0.73852 0.85959 0.86350 1.90561 1.49736 1.18449 1.84967 1.19585 1.05247 0.96357 0.84759 1.19197 0.96643 1.06874 1.03154 1.24167 1.00395 0.95125 0.93480 1.77156 0.94269 1.18675 1.24854 1.48861 1.12899 1.29743 1.24204 1.21158 0.98278 0.92352 0.90811 1.20658 0.89286 1.03770 0.97167 1.21675 0.97713 0.95596 1.00652 1.21998 0.98062 0.98972 0.98087 1.22141 0.89305 0.89682 0.98482 0.91770 0.93461 0.92304 0.92832 0.85607 0.84717 0.78256 0.90839 0.87595 0.89995 0.88321 0.85709 0.92211 0.88075 0.88919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.23 9.27 71.98 0.67 -6.56 16 2 C 0.20 10.11 2.15 29.85 0.06 10.18 16 3 H 0.03 1.35 5.73 -2.38 -0.01 1.34 16 4 C -0.62 -36.41 9.11 25.60 0.23 -36.18 16 5 H 0.04 2.26 8.06 -2.91 -0.02 2.23 16 6 C 0.01 0.43 5.19 84.66 0.44 0.87 16 7 N -0.91 -55.49 13.70 21.45 0.29 -55.20 16 8 Si 1.06 50.13 26.44 68.60 1.81 51.94 16 9 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 10 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 11 H -0.25 -10.89 6.15 99.48 0.61 -10.28 16 12 O -0.36 -16.66 9.86 -51.42 -0.51 -17.16 16 13 C 0.45 17.56 7.92 71.24 0.56 18.13 16 14 O -0.55 -24.70 15.25 21.98 0.34 -24.37 16 15 C -0.02 -0.58 6.10 29.10 0.18 -0.40 16 16 C -0.25 -7.02 4.59 -20.22 -0.09 -7.11 16 17 C 0.05 1.50 11.97 85.25 1.02 2.52 16 18 N -0.33 -9.81 12.62 -56.80 -0.72 -10.53 16 19 N -0.37 -9.66 4.04 -334.10 -1.35 -11.01 16 20 C 0.10 2.72 6.59 41.28 0.27 2.99 16 21 C -0.07 -1.45 6.02 30.04 0.18 -1.27 16 22 C -0.12 -1.56 5.97 30.79 0.18 -1.37 16 23 C -0.13 -1.69 5.93 30.73 0.18 -1.51 16 24 C 0.12 2.04 7.28 86.44 0.63 2.67 16 25 H 0.06 2.96 5.48 -2.39 -0.01 2.94 16 26 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 27 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 28 H 0.26 16.08 8.73 -92.71 -0.81 15.27 16 29 H 0.13 2.84 7.88 -2.39 -0.02 2.82 16 30 H 0.13 2.91 8.14 -2.39 -0.02 2.89 16 31 H 0.20 4.41 8.06 -2.91 -0.02 4.39 16 32 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.11 1.86 7.93 -2.39 -0.02 1.84 16 34 H 0.08 0.91 8.12 -2.38 -0.02 0.89 16 35 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.06 1.00 8.12 -2.39 -0.02 0.98 16 38 H 0.10 1.26 8.14 -2.38 -0.02 1.24 16 39 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -75.79 323.59 5.30 -70.49 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: 0.91 Total: 12.88 kcal Atomic # 6 Polarization: -21.56 SS G_CDS: 4.52 Total: -17.04 kcal Atomic # 7 Polarization: -74.97 SS G_CDS: -1.77 Total: -76.74 kcal Atomic # 8 Polarization: -41.36 SS G_CDS: -0.17 Total: -41.53 kcal Atomic # 14 Polarization: 50.13 SS G_CDS: 1.81 Total: 51.94 kcal Total: -75.79 5.30 -70.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870206014.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.438 kcal (2) G-P(sol) polarization free energy of solvation -75.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds