Wall clock time and date at job start Tue Mar 31 2020 00:42:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50699 * 109.47078 * 119.99793 * 2 1 3 5 5 H 1.08003 * 120.00271 * 120.00264 * 4 2 1 6 6 C 1.37879 * 120.00161 * 299.99763 * 4 2 1 7 7 N 1.31509 * 119.99895 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00268 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46809 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46948 * 120.00386 * 8 6 4 11 11 H 1.48497 * 109.47378 * 240.00673 * 8 6 4 12 12 N 1.46894 * 109.47515 * 239.99762 * 2 1 3 13 13 C 1.46908 * 110.99837 * 84.99962 * 12 2 1 14 14 C 1.53000 * 109.46840 * 180.02562 * 13 12 2 15 15 O 1.42897 * 109.47270 * 300.00002 * 14 13 12 16 16 C 1.50699 * 109.47399 * 59.99888 * 14 13 12 17 17 N 1.34778 * 119.99837 * 60.00097 * 16 14 13 18 18 O 1.21280 * 120.00383 * 239.99956 * 16 14 13 19 19 C 1.50704 * 109.46831 * 180.02562 * 14 13 12 20 20 C 1.38235 * 119.99904 * 329.72403 * 19 14 13 21 21 C 1.38232 * 119.99865 * 179.81269 * 20 19 14 22 22 C 1.38232 * 120.00148 * 0.39640 * 21 20 19 23 23 C 1.38233 * 120.00101 * 359.85958 * 22 21 20 24 24 C 1.38238 * 119.99980 * 150.00121 * 19 14 13 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 28 28 H 0.97006 * 120.00358 * 179.97438 * 7 6 4 29 29 H 1.00898 * 111.00604 * 208.95432 * 12 2 1 30 30 H 1.08993 * 109.47111 * 300.00155 * 13 12 2 31 31 H 1.09002 * 109.46900 * 60.00465 * 13 12 2 32 32 H 0.96705 * 114.00020 * 300.00248 * 15 14 13 33 33 H 0.96998 * 120.00033 * 359.97438 * 17 16 14 34 34 H 0.97002 * 120.00368 * 180.02562 * 17 16 14 35 35 H 1.08003 * 119.99960 * 359.97438 * 20 19 14 36 36 H 1.08004 * 119.99980 * 180.23061 * 21 20 19 37 37 H 1.07997 * 120.00190 * 179.83226 * 22 21 20 38 38 H 1.07995 * 120.00419 * 179.97438 * 23 22 21 39 39 H 1.07999 * 120.00005 * 359.97438 * 24 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3213 -1.1202 4.0081 9 1 3.1463 -2.2869 3.6039 10 1 3.1465 -0.1871 4.8166 11 1 1.1660 -1.5866 4.8161 12 7 2.0197 -0.6925 -1.1993 13 6 2.0825 0.2226 -2.3468 14 6 2.5952 -0.5332 -3.5744 15 8 3.9000 -1.0498 -3.3051 16 6 1.6597 -1.6716 -3.8903 17 7 0.3670 -1.4214 -4.1784 18 8 2.0699 -2.8129 -3.8853 19 6 2.6602 0.4057 -4.7514 20 6 1.7714 1.4604 -4.8441 21 6 1.8335 2.3238 -5.9218 22 6 2.7792 2.1279 -6.9108 23 6 3.6646 1.0702 -6.8208 24 6 3.6050 0.2089 -5.7412 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 0.7082 1.1610 3.4844 29 1 2.9173 -1.1205 -1.0286 30 1 1.0872 0.6163 -2.5525 31 1 2.7589 1.0462 -2.1181 32 1 4.5557 -0.3712 -3.0934 33 1 0.0388 -0.5087 -4.1821 34 1 -0.2353 -2.1542 -4.3814 35 1 1.0301 1.6112 -4.0733 36 1 1.1415 3.1500 -5.9924 37 1 2.8260 2.8010 -7.7541 38 1 4.4031 0.9168 -7.5937 39 1 4.2967 -0.6174 -5.6707 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878821499.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:42:52 Heat of formation + Delta-G solvation = -59.789546 kcal Electronic energy + Delta-G solvation = -22085.598318 eV Core-core repulsion = 18799.961396 eV Total energy + Delta-G solvation = -3285.636922 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.50480 -38.55971 -36.82949 -35.37827 -33.70575 -32.45004 -31.56337 -31.00648 -29.14184 -26.79459 -25.25237 -23.71801 -22.29492 -22.21004 -19.96823 -19.79354 -17.73230 -17.55908 -16.94468 -16.21906 -15.68398 -15.27300 -14.97864 -14.68719 -14.50874 -14.35524 -13.86635 -13.65887 -13.31662 -13.04753 -12.79161 -12.75414 -12.19378 -11.77657 -11.54867 -11.33888 -11.02171 -10.96462 -10.75663 -10.43496 -10.24581 -10.15876 -9.81583 -9.68577 -9.39413 -9.07815 -8.88454 -8.78942 -8.50015 -7.35518 -6.05332 -4.11017 1.10961 1.24335 2.97062 3.28663 3.36705 3.41378 3.42811 3.65197 4.27793 4.43276 4.56757 4.83431 4.86625 4.94887 5.05342 5.14787 5.26405 5.32299 5.43655 5.55238 5.74434 5.87533 5.91736 5.99992 6.28596 6.34780 6.39726 6.78209 6.81152 7.00751 7.05262 7.15410 7.40997 7.46831 7.70548 7.77101 7.84541 8.22652 8.32511 8.56336 8.61737 8.99240 9.55295 11.01103 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.024996 B = 0.004485 C = 0.004316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.911217 B = 6241.622482 C = 6486.568863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.212 3.788 3 H 0.001 0.999 4 C -0.516 4.516 5 H 0.061 0.939 6 C 0.062 3.938 7 N -0.891 5.891 8 Si 0.897 3.103 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.284 1.284 12 N -0.682 5.682 13 C 0.041 3.959 14 C 0.162 3.838 15 O -0.524 6.524 16 C 0.561 3.439 17 N -0.847 5.847 18 O -0.523 6.523 19 C -0.117 4.117 20 C -0.110 4.110 21 C -0.119 4.119 22 C -0.118 4.118 23 C -0.122 4.122 24 C -0.097 4.097 25 H 0.032 0.968 26 H 0.001 0.999 27 H 0.081 0.919 28 H 0.260 0.740 29 H 0.342 0.658 30 H 0.076 0.924 31 H 0.035 0.965 32 H 0.380 0.620 33 H 0.397 0.603 34 H 0.403 0.597 35 H 0.129 0.871 36 H 0.125 0.875 37 H 0.121 0.879 38 H 0.123 0.877 39 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.177 4.879 -18.014 18.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.105 3.895 3 H 0.018 0.982 4 C -0.555 4.555 5 H 0.080 0.920 6 C -0.140 4.140 7 N -0.530 5.530 8 Si 0.725 3.275 9 H -0.196 1.196 10 H -0.211 1.211 11 H -0.210 1.210 12 N -0.314 5.314 13 C -0.090 4.090 14 C 0.116 3.884 15 O -0.329 6.329 16 C 0.344 3.656 17 N -0.412 5.412 18 O -0.397 6.397 19 C -0.118 4.118 20 C -0.128 4.128 21 C -0.137 4.137 22 C -0.136 4.136 23 C -0.140 4.140 24 C -0.115 4.115 25 H 0.051 0.949 26 H 0.020 0.980 27 H 0.100 0.900 28 H 0.070 0.930 29 H 0.160 0.840 30 H 0.094 0.906 31 H 0.053 0.947 32 H 0.228 0.772 33 H 0.225 0.775 34 H 0.234 0.766 35 H 0.147 0.853 36 H 0.143 0.857 37 H 0.139 0.861 38 H 0.141 0.859 39 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 0.646 3.482 -18.081 18.424 hybrid contribution 0.820 1.000 1.173 1.746 sum 1.467 4.482 -16.908 17.553 Atomic orbital electron populations 1.21718 0.97876 0.99393 0.99194 1.19119 0.92590 0.92226 0.85542 0.98170 1.21303 1.31348 1.12522 0.90324 0.92035 1.24906 0.95014 0.94978 0.99067 1.69897 1.36759 1.22996 1.23379 0.86459 0.78645 0.79693 0.82751 1.19646 1.21106 1.20974 1.60678 1.33324 1.31871 1.05575 1.22601 1.00577 0.94350 0.91490 1.19937 0.85522 0.90598 0.92310 1.86626 1.17659 1.36851 1.91728 1.19355 0.82425 0.88996 0.74852 1.43545 1.10653 1.12463 1.74563 1.90718 1.76391 1.22353 1.50266 1.20390 0.97766 0.96806 0.96872 1.21185 0.98970 0.94306 0.98303 1.21150 0.98925 0.99389 0.94273 1.21207 0.95636 0.97872 0.98877 1.21163 0.99351 0.95292 0.98156 1.21090 0.98162 0.99173 0.93098 0.94899 0.97978 0.90029 0.93002 0.83961 0.90555 0.94682 0.77239 0.77510 0.76596 0.85317 0.85748 0.86100 0.85946 0.85116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.98 9.19 37.16 0.34 -2.64 16 2 C 0.21 5.27 2.60 -68.87 -0.18 5.09 16 3 H 0.00 0.02 7.80 -51.93 -0.40 -0.39 16 4 C -0.52 -14.21 8.59 -34.44 -0.30 -14.50 16 5 H 0.06 1.71 7.62 -52.48 -0.40 1.31 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -25.17 11.32 55.43 0.63 -24.54 16 8 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 9 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 12 N -0.68 -14.45 5.88 -107.95 -0.63 -15.09 16 13 C 0.04 0.68 3.85 -3.82 -0.01 0.66 16 14 C 0.16 2.45 0.84 -92.92 -0.08 2.37 16 15 O -0.52 -8.27 10.83 -55.14 -0.60 -8.86 16 16 C 0.56 9.61 6.41 -10.99 -0.07 9.54 16 17 N -0.85 -11.03 8.67 31.22 0.27 -10.76 16 18 O -0.52 -11.24 17.34 -14.35 -0.25 -11.49 16 19 C -0.12 -1.45 4.66 -104.62 -0.49 -1.94 16 20 C -0.11 -1.19 8.35 -39.58 -0.33 -1.52 16 21 C -0.12 -1.12 10.05 -39.59 -0.40 -1.51 16 22 C -0.12 -1.06 10.05 -39.59 -0.40 -1.46 16 23 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 24 C -0.10 -1.13 9.35 -39.58 -0.37 -1.50 16 25 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.00 0.03 7.45 -51.93 -0.39 -0.36 16 27 H 0.08 2.16 6.07 -51.93 -0.32 1.84 16 28 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 29 H 0.34 7.56 7.61 -39.29 -0.30 7.26 16 30 H 0.08 1.19 5.22 -51.93 -0.27 0.92 16 31 H 0.04 0.58 8.06 -51.93 -0.42 0.16 16 32 H 0.38 4.49 9.04 45.56 0.41 4.90 16 33 H 0.40 4.24 7.25 -40.82 -0.30 3.95 16 34 H 0.40 4.64 8.93 -40.82 -0.36 4.28 16 35 H 0.13 1.29 6.05 -52.48 -0.32 0.97 16 36 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 37 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 38 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 39 H 0.13 1.55 7.48 -52.49 -0.39 1.16 16 LS Contribution 323.40 15.07 4.87 4.87 Total: -1.00 -33.45 323.40 -7.78 -41.23 By element: Atomic # 1 Polarization: 19.90 SS G_CDS: -4.28 Total: 15.62 kcal Atomic # 6 Polarization: -4.61 SS G_CDS: -2.77 Total: -7.38 kcal Atomic # 7 Polarization: -50.66 SS G_CDS: 0.26 Total: -50.39 kcal Atomic # 8 Polarization: -19.51 SS G_CDS: -0.85 Total: -20.35 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -33.45 -7.78 -41.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878821499.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.559 kcal (2) G-P(sol) polarization free energy of solvation -33.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds