Wall clock time and date at job start Tue Mar 31 2020 00:42:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50699 * 109.47078 * 119.99793 * 2 1 3 5 5 H 1.08003 * 120.00271 * 120.00264 * 4 2 1 6 6 C 1.37879 * 120.00161 * 299.99763 * 4 2 1 7 7 N 1.31509 * 119.99895 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00268 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46809 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46948 * 120.00386 * 8 6 4 11 11 H 1.48497 * 109.47378 * 240.00673 * 8 6 4 12 12 N 1.46894 * 109.47515 * 239.99762 * 2 1 3 13 13 C 1.46908 * 110.99837 * 84.99962 * 12 2 1 14 14 C 1.53000 * 109.46840 * 180.02562 * 13 12 2 15 15 O 1.42897 * 109.47270 * 300.00002 * 14 13 12 16 16 C 1.50699 * 109.47399 * 59.99888 * 14 13 12 17 17 N 1.34778 * 119.99837 * 60.00097 * 16 14 13 18 18 O 1.21280 * 120.00383 * 239.99956 * 16 14 13 19 19 C 1.50704 * 109.46831 * 180.02562 * 14 13 12 20 20 C 1.38235 * 119.99904 * 329.72403 * 19 14 13 21 21 C 1.38232 * 119.99865 * 179.81269 * 20 19 14 22 22 C 1.38232 * 120.00148 * 0.39640 * 21 20 19 23 23 C 1.38233 * 120.00101 * 359.85958 * 22 21 20 24 24 C 1.38238 * 119.99980 * 150.00121 * 19 14 13 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 28 28 H 0.97006 * 120.00358 * 179.97438 * 7 6 4 29 29 H 1.00898 * 111.00604 * 208.95432 * 12 2 1 30 30 H 1.08993 * 109.47111 * 300.00155 * 13 12 2 31 31 H 1.09002 * 109.46900 * 60.00465 * 13 12 2 32 32 H 0.96705 * 114.00020 * 300.00248 * 15 14 13 33 33 H 0.96998 * 120.00033 * 359.97438 * 17 16 14 34 34 H 0.97002 * 120.00368 * 180.02562 * 17 16 14 35 35 H 1.08003 * 119.99960 * 359.97438 * 20 19 14 36 36 H 1.08004 * 119.99980 * 180.23061 * 21 20 19 37 37 H 1.07997 * 120.00190 * 179.83226 * 22 21 20 38 38 H 1.07995 * 120.00419 * 179.97438 * 23 22 21 39 39 H 1.07999 * 120.00005 * 359.97438 * 24 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3213 -1.1202 4.0081 9 1 3.1463 -2.2869 3.6039 10 1 3.1465 -0.1871 4.8166 11 1 1.1660 -1.5866 4.8161 12 7 2.0197 -0.6925 -1.1993 13 6 2.0825 0.2226 -2.3468 14 6 2.5952 -0.5332 -3.5744 15 8 3.9000 -1.0498 -3.3051 16 6 1.6597 -1.6716 -3.8903 17 7 0.3670 -1.4214 -4.1784 18 8 2.0699 -2.8129 -3.8853 19 6 2.6602 0.4057 -4.7514 20 6 1.7714 1.4604 -4.8441 21 6 1.8335 2.3238 -5.9218 22 6 2.7792 2.1279 -6.9108 23 6 3.6646 1.0702 -6.8208 24 6 3.6050 0.2089 -5.7412 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 0.7082 1.1610 3.4844 29 1 2.9173 -1.1205 -1.0286 30 1 1.0872 0.6163 -2.5525 31 1 2.7589 1.0462 -2.1181 32 1 4.5557 -0.3712 -3.0934 33 1 0.0388 -0.5087 -4.1821 34 1 -0.2353 -2.1542 -4.3814 35 1 1.0301 1.6112 -4.0733 36 1 1.1415 3.1500 -5.9924 37 1 2.8260 2.8010 -7.7541 38 1 4.4031 0.9168 -7.5937 39 1 4.2967 -0.6174 -5.6707 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878821499.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:42:52 Heat of formation + Delta-G solvation = -86.274439 kcal Electronic energy + Delta-G solvation = -22086.746789 eV Core-core repulsion = 18799.961396 eV Total energy + Delta-G solvation = -3286.785393 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.62936 -39.60322 -38.19920 -37.00593 -35.05829 -34.24675 -32.67115 -31.79450 -30.73793 -28.18925 -27.26801 -25.04712 -23.23153 -23.17235 -21.71109 -21.10411 -18.88893 -18.85877 -18.44737 -17.51733 -16.93907 -16.81307 -16.29233 -16.02829 -15.70534 -15.48630 -15.31418 -14.98277 -14.59396 -14.32595 -14.30710 -13.67352 -13.62642 -13.44274 -12.91759 -12.76927 -12.67979 -12.41226 -12.30776 -12.20903 -12.05522 -11.90236 -11.15233 -10.98664 -10.86924 -10.63773 -10.57721 -9.85194 -9.71778 -9.09161 -8.15304 -6.27962 0.29774 0.47182 1.38953 1.41770 1.53427 1.66097 2.30561 2.40544 2.82722 3.11553 3.15462 3.50575 3.80706 3.85461 3.99624 4.13617 4.14057 4.31007 4.47349 4.60124 4.66738 4.70528 4.84859 4.99228 5.06970 5.14287 5.20076 5.45354 5.52996 5.57653 5.60347 5.65790 5.85339 5.90724 6.06233 6.22777 6.35593 6.42241 6.64267 6.74451 6.94594 7.34915 7.42151 8.90075 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.024996 B = 0.004485 C = 0.004316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.911217 B = 6241.622482 C = 6486.568863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.218 3.782 3 H -0.022 1.022 4 C -0.539 4.539 5 H 0.050 0.950 6 C 0.019 3.981 7 N -0.913 5.913 8 Si 0.957 3.043 9 H -0.273 1.273 10 H -0.277 1.277 11 H -0.279 1.279 12 N -0.684 5.684 13 C 0.044 3.956 14 C 0.172 3.828 15 O -0.544 6.544 16 C 0.551 3.449 17 N -0.828 5.828 18 O -0.577 6.577 19 C -0.130 4.130 20 C -0.117 4.117 21 C -0.118 4.118 22 C -0.113 4.113 23 C -0.123 4.123 24 C -0.112 4.112 25 H 0.021 0.979 26 H 0.032 0.968 27 H 0.057 0.943 28 H 0.263 0.737 29 H 0.334 0.666 30 H 0.091 0.909 31 H 0.040 0.960 32 H 0.393 0.607 33 H 0.410 0.590 34 H 0.411 0.589 35 H 0.135 0.865 36 H 0.151 0.849 37 H 0.150 0.850 38 H 0.143 0.857 39 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.853 6.283 -19.364 20.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.110 3.890 3 H -0.005 1.005 4 C -0.577 4.577 5 H 0.068 0.932 6 C -0.181 4.181 7 N -0.552 5.552 8 Si 0.783 3.217 9 H -0.198 1.198 10 H -0.203 1.203 11 H -0.205 1.205 12 N -0.316 5.316 13 C -0.086 4.086 14 C 0.127 3.873 15 O -0.351 6.351 16 C 0.335 3.665 17 N -0.393 5.393 18 O -0.455 6.455 19 C -0.131 4.131 20 C -0.135 4.135 21 C -0.136 4.136 22 C -0.131 4.131 23 C -0.141 4.141 24 C -0.130 4.130 25 H 0.040 0.960 26 H 0.050 0.950 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.151 0.849 30 H 0.109 0.891 31 H 0.058 0.942 32 H 0.243 0.757 33 H 0.241 0.759 34 H 0.243 0.757 35 H 0.153 0.847 36 H 0.168 0.832 37 H 0.168 0.832 38 H 0.161 0.839 39 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 0.290 4.930 -19.453 20.070 hybrid contribution 0.914 0.632 1.492 1.860 sum 1.204 5.562 -17.961 18.841 Atomic orbital electron populations 1.21530 0.97337 0.98652 0.99494 1.18916 0.92922 0.90840 0.86287 1.00459 1.21590 1.31662 1.12530 0.91953 0.93188 1.25616 0.95153 0.95651 1.01669 1.69993 1.37274 1.23837 1.24118 0.85522 0.78178 0.78606 0.79404 1.19773 1.20284 1.20499 1.60585 1.32897 1.32642 1.05481 1.22667 1.01680 0.93819 0.90426 1.19758 0.84753 0.90157 0.92646 1.86592 1.18378 1.38232 1.91911 1.19852 0.83599 0.88796 0.74271 1.43410 1.09542 1.13664 1.72717 1.90685 1.77524 1.24338 1.52982 1.20128 0.99409 0.97285 0.96272 1.21301 0.98773 0.94166 0.99218 1.21487 0.99198 0.99441 0.93453 1.21601 0.94531 0.97553 0.99412 1.21434 0.99926 0.94934 0.97807 1.21112 0.98202 0.99702 0.93966 0.95971 0.94952 0.92385 0.92762 0.84863 0.89130 0.94236 0.75674 0.75893 0.75669 0.84739 0.83165 0.83179 0.83896 0.86232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.37 9.19 71.98 0.66 -4.71 16 2 C 0.22 10.93 2.60 44.17 0.11 11.05 16 3 H -0.02 -1.19 7.80 -2.39 -0.02 -1.21 16 4 C -0.54 -30.08 8.59 25.60 0.22 -29.86 16 5 H 0.05 2.84 7.62 -2.91 -0.02 2.82 16 6 C 0.02 1.03 5.30 84.66 0.45 1.48 16 7 N -0.91 -51.73 11.32 21.45 0.24 -51.49 16 8 Si 0.96 44.10 29.54 68.60 2.03 46.12 16 9 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 10 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 11 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 12 N -0.68 -29.24 5.88 -495.46 -2.91 -32.15 16 13 C 0.04 1.45 3.85 86.30 0.33 1.78 16 14 C 0.17 5.17 0.84 -12.29 -0.01 5.15 16 15 O -0.54 -17.54 10.83 -129.94 -1.41 -18.95 16 16 C 0.55 18.88 6.41 87.66 0.56 19.44 16 17 N -0.83 -20.75 8.67 -173.53 -1.50 -22.25 16 18 O -0.58 -25.39 17.34 16.01 0.28 -25.11 16 19 C -0.13 -3.07 4.66 -19.86 -0.09 -3.16 16 20 C -0.12 -2.25 8.35 22.27 0.19 -2.06 16 21 C -0.12 -1.79 10.05 22.27 0.22 -1.57 16 22 C -0.11 -1.61 10.05 22.27 0.22 -1.39 16 23 C -0.12 -2.09 10.05 22.27 0.22 -1.86 16 24 C -0.11 -2.49 9.35 22.27 0.21 -2.28 16 25 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.03 1.30 7.45 -2.39 -0.02 1.29 16 27 H 0.06 3.07 6.07 -2.38 -0.01 3.06 16 28 H 0.26 14.11 8.31 -92.70 -0.77 13.34 16 29 H 0.33 15.12 7.61 -89.70 -0.68 14.44 16 30 H 0.09 2.67 5.22 -2.39 -0.01 2.66 16 31 H 0.04 1.28 8.06 -2.39 -0.02 1.26 16 32 H 0.39 9.53 9.04 -74.05 -0.67 8.86 16 33 H 0.41 8.01 7.25 -92.71 -0.67 7.34 16 34 H 0.41 9.08 8.93 -92.71 -0.83 8.26 16 35 H 0.13 2.35 6.05 -2.91 -0.02 2.34 16 36 H 0.15 1.49 8.06 -2.91 -0.02 1.47 16 37 H 0.15 1.27 8.06 -2.91 -0.02 1.25 16 38 H 0.14 1.77 8.06 -2.91 -0.02 1.74 16 39 H 0.12 2.86 7.48 -2.91 -0.02 2.84 16 Total: -1.00 -72.69 323.40 -1.71 -74.40 By element: Atomic # 1 Polarization: 39.14 SS G_CDS: -1.74 Total: 37.41 kcal Atomic # 6 Polarization: -11.29 SS G_CDS: 3.30 Total: -7.98 kcal Atomic # 7 Polarization: -101.72 SS G_CDS: -4.17 Total: -105.89 kcal Atomic # 8 Polarization: -42.93 SS G_CDS: -1.13 Total: -44.06 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.12 kcal Total: -72.69 -1.71 -74.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878821499.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.873 kcal (2) G-P(sol) polarization free energy of solvation -72.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds