Wall clock time and date at job start Tue Mar 31 2020 00:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 5 5 H 1.07998 * 119.99629 * 239.99904 * 4 2 1 6 6 C 1.37875 * 119.99955 * 59.99333 * 4 2 1 7 7 N 1.31510 * 120.00308 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 180.02562 * 6 4 2 9 9 H 1.48507 * 109.46754 * 90.00468 * 8 6 4 10 10 H 1.48498 * 109.47278 * 210.00299 * 8 6 4 11 11 H 1.48498 * 109.47109 * 330.00728 * 8 6 4 12 12 N 1.46894 * 109.47515 * 120.00133 * 2 1 3 13 13 C 1.46899 * 111.00313 * 275.00230 * 12 2 1 14 14 C 1.52998 * 109.47303 * 179.97438 * 13 12 2 15 15 O 1.42893 * 109.47141 * 300.00126 * 14 13 12 16 16 C 1.50701 * 109.46840 * 60.00135 * 14 13 12 17 17 N 1.34773 * 120.00497 * 60.00119 * 16 14 13 18 18 O 1.21286 * 119.99586 * 239.99817 * 16 14 13 19 19 C 1.50703 * 109.47040 * 180.02562 * 14 13 12 20 20 C 1.38237 * 119.99806 * 329.72499 * 19 14 13 21 21 C 1.38239 * 119.99954 * 179.81111 * 20 19 14 22 22 C 1.38238 * 119.99355 * 0.40152 * 21 20 19 23 23 C 1.38227 * 120.00321 * 359.85266 * 22 21 20 24 24 C 1.38230 * 120.00460 * 359.95807 * 23 22 21 25 25 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 28 28 H 0.96998 * 120.00365 * 179.97438 * 7 6 4 29 29 H 1.00902 * 111.00328 * 151.04219 * 12 2 1 30 30 H 1.09003 * 109.46741 * 300.00007 * 13 12 2 31 31 H 1.09003 * 109.47153 * 59.99606 * 13 12 2 32 32 H 0.96701 * 114.00418 * 299.99681 * 15 14 13 33 33 H 0.97004 * 119.99732 * 359.97438 * 17 16 14 34 34 H 0.96999 * 120.00476 * 179.97438 * 17 16 14 35 35 H 1.07997 * 120.00020 * 359.97438 * 20 19 14 36 36 H 1.07994 * 119.99966 * 180.23224 * 21 20 19 37 37 H 1.08010 * 119.99416 * 179.83310 * 22 21 20 38 38 H 1.08004 * 119.99640 * 179.97438 * 23 22 21 39 39 H 1.07998 * 120.00330 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 1.3426 -2.1615 -4.4120 10 1 2.4865 -0.1411 -5.1123 11 1 3.6292 -1.7581 -3.7123 12 7 2.0197 -0.6925 1.1993 13 6 2.0825 0.2225 2.3469 14 6 2.5952 -0.5333 3.5744 15 8 1.7081 -1.6128 3.8739 16 6 3.9713 -1.0780 3.2903 17 7 4.9784 -0.2372 2.9816 18 8 4.1725 -2.2730 3.3396 19 6 2.6590 0.4053 4.7517 20 6 2.9032 1.7509 4.5504 21 6 2.9579 2.6126 5.6300 22 6 2.7765 2.1270 6.9116 23 6 2.5376 0.7806 7.1132 24 6 2.4790 -0.0804 6.0334 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 0.7093 1.1619 -3.4844 29 1 2.9173 -1.1205 1.0286 30 1 2.7589 1.0462 2.1181 31 1 1.0871 0.6162 2.5525 32 1 0.8022 -1.3353 4.0675 33 1 4.8174 0.7185 2.9419 34 1 5.8642 -0.5878 2.7991 35 1 3.0487 2.1295 3.5495 36 1 3.1449 3.6644 5.4725 37 1 2.8219 2.7998 7.7554 38 1 2.3963 0.4013 8.1146 39 1 2.2927 -1.1325 6.1910 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878821501.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:42:57 Heat of formation + Delta-G solvation = -84.453330 kcal Electronic energy + Delta-G solvation = -22085.793080 eV Core-core repulsion = 18799.086656 eV Total energy + Delta-G solvation = -3286.706424 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.69326 -39.67182 -38.12998 -37.02124 -35.14716 -34.27597 -32.66698 -31.79179 -30.75684 -28.13645 -27.29398 -25.12751 -23.23709 -23.22064 -21.73333 -21.10788 -18.95492 -18.77189 -18.49871 -17.49296 -17.08087 -16.84590 -16.36894 -15.91198 -15.73073 -15.46242 -15.35498 -15.11892 -14.77270 -14.30720 -14.05293 -13.66586 -13.61737 -13.32609 -13.06851 -12.84411 -12.65584 -12.39716 -12.34114 -12.21685 -12.04906 -11.90224 -11.11641 -11.04718 -10.85628 -10.76426 -10.58273 -9.85203 -9.72863 -9.06651 -8.15608 -6.28886 0.29230 0.47091 1.39854 1.42012 1.49925 1.51461 2.22720 2.39901 2.83156 3.09202 3.13959 3.52249 3.79653 3.82562 3.92366 4.11644 4.14336 4.29957 4.49871 4.58430 4.65536 4.72445 4.84930 4.98891 5.06903 5.14251 5.19662 5.44522 5.52978 5.58037 5.60323 5.64285 5.79187 5.83483 6.06097 6.20981 6.24208 6.38340 6.66756 6.77579 6.91496 7.21966 7.41226 8.89537 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.025454 B = 0.004559 C = 0.004310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.757606 B = 6140.784419 C = 6494.757967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.219 3.781 3 H -0.019 1.019 4 C -0.541 4.541 5 H 0.048 0.952 6 C 0.021 3.979 7 N -0.912 5.912 8 Si 0.957 3.043 9 H -0.278 1.278 10 H -0.278 1.278 11 H -0.272 1.272 12 N -0.680 5.680 13 C 0.044 3.956 14 C 0.174 3.826 15 O -0.536 6.536 16 C 0.532 3.468 17 N -0.831 5.831 18 O -0.568 6.568 19 C -0.129 4.129 20 C -0.117 4.117 21 C -0.118 4.118 22 C -0.113 4.113 23 C -0.123 4.123 24 C -0.110 4.110 25 H 0.027 0.973 26 H 0.022 0.978 27 H 0.058 0.942 28 H 0.264 0.736 29 H 0.324 0.676 30 H 0.048 0.952 31 H 0.085 0.915 32 H 0.393 0.607 33 H 0.412 0.588 34 H 0.413 0.587 35 H 0.133 0.867 36 H 0.150 0.850 37 H 0.151 0.849 38 H 0.144 0.856 39 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.763 7.297 18.326 20.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.111 3.889 3 H -0.001 1.001 4 C -0.579 4.579 5 H 0.066 0.934 6 C -0.179 4.179 7 N -0.551 5.551 8 Si 0.782 3.218 9 H -0.204 1.204 10 H -0.203 1.203 11 H -0.197 1.197 12 N -0.311 5.311 13 C -0.086 4.086 14 C 0.129 3.871 15 O -0.343 6.343 16 C 0.316 3.684 17 N -0.397 5.397 18 O -0.446 6.446 19 C -0.130 4.130 20 C -0.135 4.135 21 C -0.136 4.136 22 C -0.131 4.131 23 C -0.141 4.141 24 C -0.129 4.129 25 H 0.046 0.954 26 H 0.041 0.959 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.141 0.859 30 H 0.066 0.934 31 H 0.103 0.897 32 H 0.243 0.757 33 H 0.243 0.757 34 H 0.246 0.754 35 H 0.151 0.849 36 H 0.167 0.833 37 H 0.168 0.832 38 H 0.161 0.839 39 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 4.531 6.031 18.326 19.817 hybrid contribution 0.643 0.531 -1.380 1.612 sum 5.174 6.561 16.946 18.894 Atomic orbital electron populations 1.21542 0.97503 0.98728 0.99341 1.18930 0.92845 0.90958 0.86207 1.00105 1.21525 1.31874 1.12553 0.91964 0.93382 1.25605 0.95093 0.95608 1.01618 1.69984 1.37152 1.23699 1.24238 0.85580 0.78721 0.78365 0.79085 1.20381 1.20333 1.19700 1.60536 1.32061 1.33064 1.05455 1.22704 1.01792 0.93819 0.90312 1.19681 0.88587 0.86230 0.92598 1.86570 1.23679 1.32167 1.91841 1.20211 0.86786 0.86119 0.75306 1.43553 1.12419 1.11189 1.72570 1.90718 1.84171 1.17240 1.52442 1.20125 1.04472 0.94501 0.93922 1.21302 0.99643 0.92020 1.00568 1.21480 0.99151 1.00772 0.92204 1.21601 0.97806 0.95634 0.98016 1.21435 0.99554 0.93900 0.99167 1.21112 0.99177 1.00536 0.92038 0.95352 0.95859 0.92279 0.92691 0.85924 0.93412 0.89656 0.75735 0.75739 0.75411 0.84881 0.83254 0.83174 0.83858 0.86202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.55 9.19 71.98 0.66 -4.89 16 2 C 0.22 11.00 2.60 44.17 0.11 11.12 16 3 H -0.02 -0.99 7.80 -2.39 -0.02 -1.01 16 4 C -0.54 -30.20 8.59 25.60 0.22 -29.98 16 5 H 0.05 2.74 7.62 -2.91 -0.02 2.71 16 6 C 0.02 1.14 5.30 84.65 0.45 1.59 16 7 N -0.91 -51.53 11.32 21.45 0.24 -51.28 16 8 Si 0.96 43.90 29.54 68.60 2.03 45.92 16 9 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 10 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 11 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 12 N -0.68 -29.43 6.15 -495.46 -3.05 -32.47 16 13 C 0.04 1.45 3.88 86.30 0.33 1.78 16 14 C 0.17 5.26 0.84 -12.29 -0.01 5.25 16 15 O -0.54 -17.90 11.36 -129.94 -1.48 -19.38 16 16 C 0.53 17.86 5.63 87.66 0.49 18.36 16 17 N -0.83 -20.14 8.67 -173.53 -1.50 -21.65 16 18 O -0.57 -24.48 17.34 15.99 0.28 -24.20 16 19 C -0.13 -3.06 4.66 -19.86 -0.09 -3.15 16 20 C -0.12 -2.27 8.35 22.27 0.19 -2.09 16 21 C -0.12 -1.81 10.05 22.27 0.22 -1.58 16 22 C -0.11 -1.61 10.05 22.27 0.22 -1.38 16 23 C -0.12 -2.07 10.05 22.27 0.22 -1.85 16 24 C -0.11 -2.46 9.35 22.27 0.21 -2.25 16 25 H 0.03 1.20 7.45 -2.39 -0.02 1.18 16 26 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.06 3.17 6.07 -2.38 -0.01 3.16 16 28 H 0.26 14.13 8.31 -92.71 -0.77 13.36 16 29 H 0.32 14.85 7.10 -89.69 -0.64 14.21 16 30 H 0.05 1.43 5.85 -2.39 -0.01 1.42 16 31 H 0.09 2.74 7.44 -2.39 -0.02 2.72 16 32 H 0.39 10.17 9.04 -74.06 -0.67 9.50 16 33 H 0.41 7.87 7.26 -92.71 -0.67 7.19 16 34 H 0.41 8.70 8.93 -92.71 -0.83 7.87 16 35 H 0.13 2.38 6.05 -2.91 -0.02 2.36 16 36 H 0.15 1.52 8.06 -2.91 -0.02 1.49 16 37 H 0.15 1.27 8.06 -2.91 -0.02 1.25 16 38 H 0.14 1.76 8.06 -2.91 -0.02 1.73 16 39 H 0.12 2.88 7.48 -2.91 -0.02 2.86 16 Total: -1.00 -72.16 322.95 -1.94 -74.09 By element: Atomic # 1 Polarization: 39.74 SS G_CDS: -1.69 Total: 38.05 kcal Atomic # 6 Polarization: -12.31 SS G_CDS: 3.24 Total: -9.07 kcal Atomic # 7 Polarization: -101.10 SS G_CDS: -4.31 Total: -105.40 kcal Atomic # 8 Polarization: -42.39 SS G_CDS: -1.20 Total: -43.59 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.92 kcal Total: -72.16 -1.94 -74.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878821501.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.359 kcal (2) G-P(sol) polarization free energy of solvation -72.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds