Wall clock time and date at job start Tue Mar 31 2020 00:27:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34226 * 117.00019 * 2 1 4 4 O 1.20823 * 119.99932 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00113 * 179.97438 * 3 2 1 6 6 C 1.53003 * 109.47240 * 179.97438 * 5 3 2 7 7 N 1.46496 * 109.47378 * 179.97438 * 6 5 3 8 8 C 1.36943 * 119.99936 * 93.46587 * 7 6 5 9 9 H 1.07994 * 120.00279 * 214.23097 * 8 7 6 10 10 C 1.38814 * 119.99678 * 34.50562 * 8 7 6 11 11 N 1.31629 * 120.00007 * 21.72654 * 10 8 7 12 12 Si 1.86791 * 120.00123 * 201.72290 * 10 8 7 13 13 H 1.48497 * 109.47165 * 90.00008 * 12 10 8 14 14 H 1.48500 * 109.47269 * 210.00348 * 12 10 8 15 15 H 1.48504 * 109.47001 * 330.00037 * 12 10 8 16 16 C 1.46497 * 120.00259 * 273.47098 * 7 6 5 17 17 H 1.08999 * 109.47180 * 0.02562 * 16 7 6 18 18 C 1.53006 * 109.47019 * 119.99786 * 16 7 6 19 19 C 1.50696 * 109.47496 * 239.99743 * 16 7 6 20 20 C 1.38229 * 119.62237 * 154.99458 * 19 16 7 21 21 C 1.38627 * 119.16033 * 179.97438 * 20 19 16 22 22 C 1.38664 * 118.42297 * 0.02562 * 21 20 19 23 23 C 1.38179 * 119.16493 * 359.97438 * 22 21 20 24 24 N 1.31858 * 119.61617 * 334.72944 * 19 16 7 25 25 H 1.08998 * 109.47209 * 60.00445 * 1 2 3 26 26 H 1.09001 * 109.47162 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47924 * 300.00079 * 1 2 3 28 28 H 1.08999 * 109.47186 * 60.00211 * 5 3 2 29 29 H 1.09000 * 109.47280 * 299.99532 * 5 3 2 30 30 H 1.09002 * 109.47226 * 59.99975 * 6 5 3 31 31 H 1.09005 * 109.47178 * 300.00068 * 6 5 3 32 32 H 0.96991 * 119.99674 * 179.97438 * 11 10 8 33 33 H 1.08999 * 109.47364 * 299.99939 * 18 16 7 34 34 H 1.08997 * 109.47204 * 59.99927 * 18 16 7 35 35 H 1.08998 * 109.46923 * 180.02562 * 18 16 7 36 36 H 1.08002 * 120.41601 * 0.02562 * 20 19 16 37 37 H 1.07998 * 120.78486 * 180.02562 * 21 20 19 38 38 H 1.08006 * 120.41874 * 180.02562 * 22 21 20 39 39 H 1.08007 * 119.61845 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5662 1.2749 0.0006 6 6 4.0001 2.7421 -0.0002 7 7 5.4630 2.8188 0.0010 8 6 6.1440 2.9254 -1.1823 9 1 7.1097 2.4550 -1.2938 10 6 5.5956 3.6428 -2.2365 11 7 4.6747 4.5542 -2.0038 12 14 6.1643 3.3151 -3.9853 13 1 5.3173 2.2564 -4.5911 14 1 6.0476 4.5606 -4.7854 15 1 7.5802 2.8677 -3.9696 16 6 6.1975 2.7815 1.2680 17 1 5.4921 2.6945 2.0944 18 6 7.1415 1.5773 1.2750 19 6 6.9986 4.0486 1.4219 20 6 7.3430 4.4899 2.6857 21 6 8.0805 5.6564 2.8162 22 6 8.4452 6.3388 1.6655 23 6 8.0646 5.8368 0.4356 24 7 7.3673 4.7207 0.3491 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3635 0.5138 0.8899 28 1 3.9563 0.7806 -0.8891 29 1 3.9556 0.7810 0.8909 30 1 3.6100 3.2368 0.8893 31 1 3.6107 3.2357 -0.8907 32 1 4.2918 5.0557 -2.7404 33 1 6.5621 0.6608 1.1637 34 1 7.8468 1.6638 0.4485 35 1 7.6876 1.5493 2.2178 36 1 7.0420 3.9325 3.5604 37 1 8.3642 6.0250 3.7909 38 1 9.0202 7.2508 1.7296 39 1 8.3451 6.3622 -0.4654 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879474572.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:27:23 Heat of formation + Delta-G solvation = -20.538234 kcal Electronic energy + Delta-G solvation = -22070.349641 eV Core-core repulsion = 18786.414784 eV Total energy + Delta-G solvation = -3283.934857 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.91709 -39.43976 -36.47809 -35.79607 -32.59752 -31.65280 -31.33188 -29.62478 -28.30649 -27.17746 -24.67873 -23.46914 -22.77677 -21.85074 -20.12626 -19.60890 -17.26973 -16.62963 -16.12455 -15.93630 -15.74241 -15.49321 -14.97875 -14.34943 -13.84900 -13.63322 -13.34784 -13.21868 -12.91278 -12.71395 -12.45942 -12.09737 -11.94562 -11.71455 -11.48176 -11.31067 -10.93991 -10.80528 -10.70501 -10.53975 -10.46676 -9.98540 -9.91878 -9.79245 -9.57814 -9.11549 -8.42419 -8.23408 -8.14929 -6.54361 -5.60834 -3.09962 1.82250 2.03923 2.78301 3.19651 3.46963 3.54840 3.55150 4.58346 4.65195 5.11086 5.19281 5.28217 5.33657 5.35446 5.44586 5.52163 5.58718 5.68061 5.73426 5.85579 5.95938 6.00786 6.09213 6.28172 6.30675 6.36403 6.43939 6.51233 6.63824 6.75389 6.80177 6.83936 6.99459 7.07587 7.45091 7.81867 8.02520 8.29329 8.61934 9.06418 9.32064 9.93207 10.46583 11.43292 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.014785 B = 0.006382 C = 0.005047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.369473 B = 4386.220692 C = 5546.985006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.370 6.370 3 C 0.460 3.540 4 O -0.507 6.507 5 C -0.131 4.131 6 C 0.157 3.843 7 N -0.564 5.564 8 C -0.213 4.213 9 H 0.065 0.935 10 C 0.014 3.986 11 N -0.884 5.884 12 Si 0.890 3.110 13 H -0.291 1.291 14 H -0.295 1.295 15 H -0.280 1.280 16 C 0.205 3.795 17 H 0.063 0.937 18 C -0.150 4.150 19 C 0.135 3.865 20 C -0.189 4.189 21 C -0.090 4.090 22 C -0.200 4.200 23 C 0.095 3.905 24 N -0.397 5.397 25 H 0.058 0.942 26 H 0.093 0.907 27 H 0.057 0.943 28 H 0.102 0.898 29 H 0.085 0.915 30 H 0.029 0.971 31 H 0.114 0.886 32 H 0.250 0.750 33 H 0.054 0.946 34 H 0.060 0.940 35 H 0.039 0.961 36 H 0.121 0.879 37 H 0.119 0.881 38 H 0.118 0.882 39 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.684 -4.771 8.170 9.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.288 6.288 3 C 0.303 3.697 4 O -0.394 6.394 5 C -0.171 4.171 6 C 0.030 3.970 7 N -0.281 5.281 8 C -0.343 4.343 9 H 0.082 0.918 10 C -0.185 4.185 11 N -0.527 5.527 12 Si 0.720 3.280 13 H -0.219 1.219 14 H -0.222 1.222 15 H -0.205 1.205 16 C 0.096 3.904 17 H 0.081 0.919 18 C -0.209 4.209 19 C -0.005 4.005 20 C -0.210 4.210 21 C -0.116 4.116 22 C -0.220 4.220 23 C -0.063 4.063 24 N -0.104 5.104 25 H 0.077 0.923 26 H 0.111 0.889 27 H 0.076 0.924 28 H 0.120 0.880 29 H 0.103 0.897 30 H 0.047 0.953 31 H 0.131 0.869 32 H 0.060 0.940 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.058 0.942 36 H 0.139 0.861 37 H 0.137 0.863 38 H 0.137 0.863 39 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 0.139 -4.651 7.206 8.578 hybrid contribution 0.288 0.531 -0.030 0.605 sum 0.427 -4.120 7.176 8.286 Atomic orbital electron populations 1.23126 0.77846 1.02798 1.02185 1.86570 1.22442 1.34996 1.84758 1.24541 0.92881 0.80687 0.71584 1.90641 1.67374 1.36273 1.45100 1.22453 0.84433 1.05825 1.04386 1.20861 0.83661 0.88690 1.03819 1.43925 1.00728 1.82870 1.00613 1.18794 1.02916 1.25002 0.87593 0.91778 1.24977 0.99696 0.95303 0.98537 1.69984 1.30794 1.21939 1.29973 0.86493 0.78441 0.77030 0.85993 1.21862 1.22154 1.20508 1.19559 0.91565 0.88671 0.90592 0.91875 1.22141 1.00086 0.98303 1.00386 1.22435 0.93313 0.97159 0.87613 1.21953 1.02006 0.98207 0.98846 1.21308 0.97122 0.94970 0.98175 1.22014 1.04084 1.01547 0.94394 1.22958 0.93813 0.93148 0.96401 1.68110 1.05796 1.04715 1.31759 0.92275 0.88853 0.92388 0.87963 0.89683 0.95268 0.86890 0.94034 0.92650 0.92123 0.94192 0.86118 0.86306 0.86348 0.84054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.56 101.05 1.07 1.50 16 2 O -0.37 -6.02 10.56 -39.25 -0.41 -6.44 16 3 C 0.46 8.72 7.96 36.00 0.29 9.01 16 4 O -0.51 -11.08 15.73 -18.75 -0.29 -11.38 16 5 C -0.13 -2.47 6.14 -27.88 -0.17 -2.64 16 6 C 0.16 3.61 4.50 -4.04 -0.02 3.59 16 7 N -0.56 -13.08 2.34 -166.98 -0.39 -13.47 16 8 C -0.21 -5.46 6.88 -15.06 -0.10 -5.57 16 9 H 0.06 1.69 6.83 -52.49 -0.36 1.33 16 10 C 0.01 0.38 4.95 -17.43 -0.09 0.29 16 11 N -0.88 -25.33 11.32 55.49 0.63 -24.70 16 12 Si 0.89 21.67 29.61 -169.99 -5.03 16.64 16 13 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 14 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 15 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 16 C 0.20 4.06 3.02 -69.08 -0.21 3.85 16 17 H 0.06 1.15 7.81 -51.93 -0.41 0.75 16 18 C -0.15 -2.58 9.14 37.16 0.34 -2.24 16 19 C 0.14 2.76 5.88 -82.59 -0.49 2.27 16 20 C -0.19 -3.20 9.77 -39.44 -0.39 -3.58 16 21 C -0.09 -1.38 10.18 -39.28 -0.40 -1.77 16 22 C -0.20 -3.21 10.11 -39.45 -0.40 -3.61 16 23 C 0.09 1.84 11.18 -17.55 -0.20 1.64 16 24 N -0.40 -8.96 7.89 -9.47 -0.07 -9.03 16 25 H 0.06 0.75 8.13 -51.93 -0.42 0.33 16 26 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.06 0.70 8.13 -51.93 -0.42 0.28 16 28 H 0.10 1.96 8.14 -51.93 -0.42 1.54 16 29 H 0.08 1.41 8.14 -51.93 -0.42 0.98 16 30 H 0.03 0.68 7.95 -51.93 -0.41 0.27 16 31 H 0.11 3.07 5.30 -51.93 -0.27 2.79 16 32 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 33 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.06 1.16 6.97 -51.93 -0.36 0.80 16 35 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.12 1.70 8.06 -52.49 -0.42 1.28 16 37 H 0.12 1.43 8.06 -52.49 -0.42 1.00 16 38 H 0.12 1.53 8.06 -52.48 -0.42 1.10 16 39 H 0.14 2.52 8.06 -52.48 -0.42 2.09 16 LS Contribution 331.40 15.07 4.99 4.99 Total: -1.00 -31.34 331.40 -6.94 -38.28 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -5.60 Total: 2.35 kcal Atomic # 6 Polarization: 3.51 SS G_CDS: -0.76 Total: 2.75 kcal Atomic # 7 Polarization: -47.37 SS G_CDS: 0.16 Total: -47.21 kcal Atomic # 8 Polarization: -17.11 SS G_CDS: -0.71 Total: -17.82 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.03 Total: 16.64 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.34 -6.94 -38.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879474572.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.743 kcal (2) G-P(sol) polarization free energy of solvation -31.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds