Wall clock time and date at job start Tue Mar 31 2020 00:29:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34226 * 117.00258 * 2 1 4 4 O 1.20820 * 119.99542 * 0.02562 * 3 2 1 5 5 C 1.50698 * 119.99977 * 179.97438 * 3 2 1 6 6 C 1.53001 * 109.47166 * 180.02562 * 5 3 2 7 7 N 1.46502 * 109.47249 * 180.02562 * 6 5 3 8 8 C 1.36933 * 119.99388 * 269.99760 * 7 6 5 9 9 H 1.07997 * 120.00591 * 351.46283 * 8 7 6 10 10 C 1.38816 * 119.99613 * 171.46037 * 8 7 6 11 11 N 1.31615 * 120.00115 * 330.50793 * 10 8 7 12 12 Si 1.86801 * 120.00049 * 150.50569 * 10 8 7 13 13 H 1.48498 * 109.47061 * 90.00074 * 12 10 8 14 14 H 1.48505 * 109.47068 * 210.00333 * 12 10 8 15 15 H 1.48500 * 109.47182 * 330.00169 * 12 10 8 16 16 C 1.46489 * 120.00172 * 90.00269 * 7 6 5 17 17 H 1.09003 * 109.47533 * 237.77759 * 16 7 6 18 18 C 1.53006 * 109.47075 * 357.77747 * 16 7 6 19 19 C 1.50699 * 109.47585 * 117.77589 * 16 7 6 20 20 C 1.38650 * 120.79316 * 134.08355 * 19 16 7 21 21 C 1.38202 * 119.16167 * 179.97438 * 20 19 16 22 22 N 1.31866 * 120.76828 * 0.02562 * 21 20 19 23 23 C 1.31867 * 121.72597 * 359.97438 * 22 21 20 24 24 C 1.38205 * 120.76289 * 0.02562 * 23 22 21 25 25 H 1.09004 * 109.47551 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47364 * 299.99691 * 1 2 3 27 27 H 1.08999 * 109.47451 * 59.99567 * 1 2 3 28 28 H 1.09007 * 109.46920 * 60.00705 * 5 3 2 29 29 H 1.08997 * 109.47857 * 300.00891 * 5 3 2 30 30 H 1.09007 * 109.46897 * 60.00358 * 6 5 3 31 31 H 1.08997 * 109.47188 * 300.00967 * 6 5 3 32 32 H 0.97007 * 120.00501 * 179.97438 * 11 10 8 33 33 H 1.08991 * 109.47426 * 58.91031 * 18 16 7 34 34 H 1.09004 * 109.46599 * 178.90905 * 18 16 7 35 35 H 1.08997 * 109.46991 * 298.90255 * 18 16 7 36 36 H 1.07994 * 120.41560 * 0.25648 * 20 19 16 37 37 H 1.07999 * 119.61465 * 179.97438 * 21 20 19 38 38 H 1.08002 * 119.62301 * 180.02562 * 23 22 21 39 39 H 1.08008 * 120.42020 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2092 0.0005 5 6 3.5663 1.2747 0.0006 6 6 4.0002 2.7419 0.0011 7 7 5.4632 2.8186 0.0011 8 6 6.1468 2.8540 1.1870 9 1 5.6093 2.9645 2.1171 10 6 7.5309 2.7477 1.1936 11 7 8.1431 2.0659 0.2488 12 14 8.5246 3.5724 2.5434 13 1 8.6950 2.6303 3.6785 14 1 9.8579 3.9551 2.0131 15 1 7.8107 4.7875 3.0115 16 6 6.1946 2.8574 -1.2676 17 1 6.8954 2.0235 -1.3087 18 6 5.2055 2.7501 -2.4300 19 6 6.9523 4.1559 -1.3711 20 6 8.2762 4.1743 -1.7826 21 6 8.9387 5.3843 -1.8661 22 7 8.3264 6.5112 -1.5595 23 6 7.0684 6.5316 -1.1646 24 6 6.3421 5.3607 -1.0572 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 3.9563 0.7805 -0.8893 29 1 3.9558 0.7807 0.8907 30 1 3.6102 3.2358 0.8912 31 1 3.6107 3.2363 -0.8888 32 1 9.1103 1.9919 0.2532 33 1 4.4928 3.5730 -2.3779 34 1 5.7480 2.7984 -3.3742 35 1 4.6713 1.8021 -2.3661 36 1 8.7819 3.2552 -2.0390 37 1 9.9702 5.4071 -2.1854 38 1 6.6002 7.4742 -0.9223 39 1 5.3119 5.3839 -0.7336 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879475266.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:29:00 Heat of formation + Delta-G solvation = -37.638204 kcal Electronic energy + Delta-G solvation = -22268.598981 eV Core-core repulsion = 18983.922613 eV Total energy + Delta-G solvation = -3284.676368 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.43568 -40.89007 -38.48031 -37.41206 -34.16147 -33.90953 -31.87880 -31.33743 -30.37939 -28.54516 -26.11396 -25.38957 -24.05046 -23.52643 -21.77293 -20.87476 -19.09566 -18.50135 -17.56668 -17.50746 -17.21388 -16.64449 -16.57069 -16.26662 -15.75396 -15.38705 -14.93076 -14.61886 -14.36536 -14.25781 -14.09661 -13.63412 -13.48349 -13.33596 -12.96683 -12.83103 -12.73093 -12.47003 -12.32635 -12.15884 -11.78064 -11.77106 -11.74079 -11.54577 -11.43042 -10.76999 -10.21719 -9.94163 -9.80249 -8.87241 -7.76288 -5.14049 0.49917 0.68642 1.23877 1.38445 1.47351 1.51544 1.85766 2.52091 3.11244 3.31664 3.61710 3.75706 4.00719 4.15503 4.22613 4.24187 4.34976 4.36930 4.42638 4.53229 4.54939 4.62893 4.70570 4.74453 4.83662 4.92282 5.00854 5.07222 5.11260 5.14771 5.35344 5.46664 5.53365 5.65669 5.75928 6.04738 6.09582 6.37073 6.79797 7.19301 7.22812 7.90603 8.29155 9.15808 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.019500 B = 0.005739 C = 0.004995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.554520 B = 4877.817016 C = 5604.039260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.370 6.370 3 C 0.471 3.529 4 O -0.538 6.538 5 C -0.127 4.127 6 C 0.161 3.839 7 N -0.585 5.585 8 C -0.258 4.258 9 H 0.067 0.933 10 C -0.013 4.013 11 N -0.890 5.890 12 Si 0.911 3.089 13 H -0.289 1.289 14 H -0.299 1.299 15 H -0.290 1.290 16 C 0.202 3.798 17 H 0.089 0.911 18 C -0.149 4.149 19 C -0.006 4.006 20 C -0.154 4.154 21 C 0.066 3.934 22 N -0.520 5.520 23 C 0.070 3.930 24 C -0.162 4.162 25 H 0.130 0.870 26 H 0.059 0.941 27 H 0.063 0.937 28 H 0.109 0.891 29 H 0.098 0.902 30 H 0.043 0.957 31 H 0.068 0.932 32 H 0.249 0.751 33 H 0.055 0.945 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.127 0.873 37 H 0.164 0.836 38 H 0.167 0.833 39 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.995 -2.439 -5.340 10.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.286 6.286 3 C 0.316 3.684 4 O -0.428 6.428 5 C -0.167 4.167 6 C 0.034 3.966 7 N -0.306 5.306 8 C -0.388 4.388 9 H 0.085 0.915 10 C -0.211 4.211 11 N -0.535 5.535 12 Si 0.742 3.258 13 H -0.216 1.216 14 H -0.226 1.226 15 H -0.217 1.217 16 C 0.096 3.904 17 H 0.107 0.893 18 C -0.207 4.207 19 C -0.016 4.016 20 C -0.174 4.174 21 C -0.090 4.090 22 N -0.230 5.230 23 C -0.086 4.086 24 C -0.182 4.182 25 H 0.148 0.852 26 H 0.078 0.922 27 H 0.082 0.918 28 H 0.127 0.873 29 H 0.116 0.884 30 H 0.061 0.939 31 H 0.087 0.913 32 H 0.059 0.941 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.145 0.855 37 H 0.181 0.819 38 H 0.184 0.816 39 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -8.605 -1.412 -5.417 10.266 hybrid contribution 0.251 -0.345 1.252 1.323 sum -8.354 -1.758 -4.165 9.498 Atomic orbital electron populations 1.23525 0.75140 1.05532 1.02447 1.86547 1.24926 1.33320 1.83809 1.24226 0.92465 0.81001 0.70756 1.90611 1.67944 1.37194 1.47091 1.22284 0.85294 1.03285 1.05827 1.20692 0.83188 0.91818 1.00888 1.44233 1.00343 1.84064 1.01917 1.19171 0.89411 1.43627 0.86562 0.91535 1.24709 0.97207 1.00687 0.98543 1.70059 1.08210 1.39352 1.35895 0.86127 0.78882 0.79585 0.81184 1.21585 1.22618 1.21677 1.19758 0.92852 0.93773 0.84027 0.89346 1.22140 0.99069 1.01868 0.97601 1.21154 0.94000 0.96781 0.89715 1.22026 0.95300 0.98944 1.01135 1.22892 1.00412 0.88040 0.97624 1.67571 1.11118 1.31002 1.13323 1.22911 0.90294 0.98723 0.96683 1.21954 1.01674 0.93194 1.01414 0.85175 0.92210 0.91844 0.87337 0.88420 0.93894 0.91346 0.94079 0.92585 0.91633 0.91553 0.85463 0.81914 0.81616 0.85620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.56 113.37 1.20 1.70 16 2 O -0.37 -9.84 10.56 -51.38 -0.54 -10.38 16 3 C 0.47 14.48 7.96 71.24 0.57 15.04 16 4 O -0.54 -18.78 15.73 21.98 0.35 -18.44 16 5 C -0.13 -4.05 6.01 29.85 0.18 -3.87 16 6 C 0.16 5.85 4.32 86.38 0.37 6.23 16 7 N -0.59 -24.89 2.24 -682.21 -1.53 -26.42 16 8 C -0.26 -12.73 9.37 84.03 0.79 -11.95 16 9 H 0.07 3.35 7.97 -2.91 -0.02 3.32 16 10 C -0.01 -0.68 4.28 84.86 0.36 -0.32 16 11 N -0.89 -45.28 9.11 21.65 0.20 -45.09 16 12 Si 0.91 43.90 29.64 68.60 2.03 45.93 16 13 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 14 H -0.30 -14.89 7.11 99.48 0.71 -14.18 16 15 H -0.29 -14.28 7.11 99.48 0.71 -13.58 16 16 C 0.20 8.14 2.54 44.25 0.11 8.25 16 17 H 0.09 4.13 5.78 -2.39 -0.01 4.11 16 18 C -0.15 -4.76 7.95 71.98 0.57 -4.19 16 19 C -0.01 -0.26 3.38 -19.67 -0.07 -0.33 16 20 C -0.15 -6.13 8.64 22.36 0.19 -5.93 16 21 C 0.07 2.49 11.18 84.68 0.95 3.44 16 22 N -0.52 -20.26 10.36 -195.85 -2.03 -22.29 16 23 C 0.07 2.59 11.18 84.68 0.95 3.54 16 24 C -0.16 -6.31 9.38 22.36 0.21 -6.10 16 25 H 0.13 1.53 8.14 -2.38 -0.02 1.51 16 26 H 0.06 1.13 8.13 -2.39 -0.02 1.12 16 27 H 0.06 1.16 8.13 -2.39 -0.02 1.14 16 28 H 0.11 3.26 6.56 -2.38 -0.02 3.25 16 29 H 0.10 3.32 8.14 -2.39 -0.02 3.30 16 30 H 0.04 1.67 7.99 -2.38 -0.02 1.65 16 31 H 0.07 2.35 5.71 -2.39 -0.01 2.33 16 32 H 0.25 12.66 8.31 -92.70 -0.77 11.89 16 33 H 0.06 1.72 6.71 -2.39 -0.02 1.70 16 34 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.07 1.95 6.23 -2.39 -0.01 1.93 16 36 H 0.13 5.03 7.89 -2.91 -0.02 5.01 16 37 H 0.16 5.13 8.06 -2.91 -0.02 5.10 16 38 H 0.17 5.03 8.06 -2.91 -0.02 5.01 16 39 H 0.13 4.73 7.97 -2.91 -0.02 4.71 16 Total: -1.00 -58.91 323.64 5.90 -53.01 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: 1.04 Total: 18.17 kcal Atomic # 6 Polarization: -0.87 SS G_CDS: 6.38 Total: 5.51 kcal Atomic # 7 Polarization: -90.44 SS G_CDS: -3.36 Total: -93.80 kcal Atomic # 8 Polarization: -28.62 SS G_CDS: -0.20 Total: -28.82 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -58.91 5.90 -53.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879475266.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.367 kcal (2) G-P(sol) polarization free energy of solvation -58.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds