Wall clock time and date at job start Tue Mar 31 2020 00:34:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 114.00000 * 2 1 4 4 H 1.08996 * 109.46814 * 30.01044 * 3 2 1 5 5 C 1.52993 * 109.47485 * 270.00276 * 3 2 1 6 6 C 1.53005 * 109.46838 * 150.00375 * 3 2 1 7 7 C 1.52997 * 109.47264 * 295.00389 * 6 3 2 8 8 C 1.50695 * 109.47438 * 180.02562 * 7 6 3 9 9 O 1.21278 * 119.99557 * 359.97438 * 8 7 6 10 10 N 1.34773 * 120.00231 * 180.02562 * 8 7 6 11 11 C 1.39267 * 119.99948 * 174.40059 * 10 8 7 12 12 C 1.39670 * 119.57670 * 341.10516 * 11 10 8 13 13 C 1.38655 * 119.49841 * 179.74378 * 12 11 10 14 14 C 1.38353 * 118.66735 * 0.52432 * 13 12 11 15 15 C 1.40580 * 119.12988 * 359.74127 * 14 13 12 16 16 C 1.41336 * 119.78998 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99468 * 6.33888 * 16 15 14 18 18 C 1.40021 * 120.00095 * 186.34463 * 16 15 14 19 19 N 1.30744 * 120.00016 * 353.65083 * 18 16 15 20 20 Si 1.86803 * 120.00082 * 173.65111 * 18 16 15 21 21 H 1.48503 * 109.47077 * 94.98120 * 20 18 16 22 22 H 1.48495 * 109.47069 * 214.98054 * 20 18 16 23 23 H 1.48496 * 109.46717 * 334.98286 * 20 18 16 24 24 N 1.31909 * 119.57563 * 161.37684 * 11 10 8 25 25 H 1.08999 * 109.46648 * 299.99336 * 1 2 3 26 26 H 1.08996 * 109.47251 * 59.99590 * 1 2 3 27 27 H 1.09001 * 109.47121 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47374 * 180.02562 * 5 3 2 29 29 H 1.09006 * 109.47103 * 59.99723 * 5 3 2 30 30 H 1.09000 * 109.47523 * 300.00673 * 5 3 2 31 31 H 1.09003 * 109.47073 * 55.00074 * 6 3 2 32 32 H 1.09000 * 109.46796 * 175.00440 * 6 3 2 33 33 H 1.09003 * 109.46818 * 299.99841 * 7 6 3 34 34 H 1.09002 * 109.47411 * 59.99542 * 7 6 3 35 35 H 0.97000 * 120.00047 * 354.39789 * 10 8 7 36 36 H 1.08004 * 120.25092 * 0.02562 * 12 11 10 37 37 H 1.07995 * 120.67075 * 180.26560 * 13 12 11 38 38 H 1.07999 * 120.43414 * 179.76759 * 14 13 12 39 39 H 0.97001 * 120.00025 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9992 0.5140 5 6 2.2176 1.7714 -1.4424 6 6 3.3590 1.2631 0.7212 7 6 3.1385 0.9182 2.1954 8 6 4.4668 0.8771 2.9059 9 8 5.4892 1.1012 2.2933 10 7 4.5187 0.5903 4.2217 11 6 5.7506 0.4374 4.8530 12 6 6.8913 0.1869 4.0871 13 6 8.1179 0.0402 4.7169 14 6 8.1716 0.1366 6.0960 15 6 6.9870 0.3845 6.8113 16 6 7.0259 0.4862 8.2205 17 1 7.9746 0.4760 8.7366 18 6 5.8345 0.6000 8.9473 19 7 4.6961 0.7372 8.3192 20 14 5.8717 0.5558 10.8145 21 1 5.9113 1.9435 11.3418 22 1 4.6547 -0.1303 11.3177 23 1 7.0787 -0.1807 11.2681 24 7 5.8241 0.5257 6.1671 25 1 -0.3632 0.5137 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 2.6614 2.7670 -1.4424 29 1 1.2568 1.8015 -1.9562 30 1 2.8828 1.0775 -1.9564 31 1 3.9931 0.5050 0.2616 32 1 3.8427 2.2369 0.6443 33 1 2.5043 1.6763 2.6550 34 1 2.6546 -0.0556 2.2723 35 1 3.6980 0.4905 4.7290 36 1 6.8194 0.1125 3.0120 37 1 9.0127 -0.1497 4.1428 38 1 9.1112 0.0232 6.6162 39 1 3.8708 0.8164 8.8228 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882472691.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:34:55 Heat of formation + Delta-G solvation = -51.571831 kcal Electronic energy + Delta-G solvation = -20999.535326 eV Core-core repulsion = 17714.254751 eV Total energy + Delta-G solvation = -3285.280575 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.85862 -38.56234 -37.63663 -34.31094 -33.73008 -33.23125 -30.57327 -30.37114 -28.97394 -26.90346 -25.61448 -24.59770 -21.84463 -21.54885 -20.91790 -19.63982 -17.49602 -17.08967 -16.93944 -16.15987 -15.35986 -15.24308 -15.11720 -14.81695 -14.39726 -13.90725 -13.70466 -13.32459 -13.10347 -12.87697 -12.70225 -12.33844 -12.18724 -11.96163 -11.62674 -11.44922 -11.27274 -11.12498 -11.05983 -10.84312 -10.69485 -10.64920 -10.11677 -9.80496 -9.79328 -9.20218 -8.88956 -8.02567 -7.67640 -7.07999 -6.41861 -4.49724 2.52933 2.90912 3.08901 3.12403 3.24061 3.42335 3.58023 3.66377 3.95380 4.66661 4.76373 4.78399 4.95006 5.11348 5.12373 5.20931 5.25986 5.43009 5.45271 5.52510 5.67635 5.76034 5.91473 5.97290 6.02396 6.19640 6.24883 6.46433 6.78993 6.82708 6.87511 7.04778 7.14727 7.50469 7.53576 7.87767 7.92412 8.15432 8.31297 8.68991 8.74894 8.98660 10.05806 10.31660 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.025230 B = 0.003566 C = 0.003203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.508482 B = 7849.106894 C = 8739.846667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.383 6.383 3 C 0.083 3.917 4 H 0.061 0.939 5 C -0.174 4.174 6 C -0.100 4.100 7 C -0.136 4.136 8 C 0.511 3.489 9 O -0.524 6.524 10 N -0.648 5.648 11 C 0.356 3.644 12 C -0.312 4.312 13 C -0.050 4.050 14 C -0.289 4.289 15 C 0.279 3.721 16 C -0.436 4.436 17 H 0.085 0.915 18 C 0.071 3.929 19 N -0.723 5.723 20 Si 0.907 3.093 21 H -0.271 1.271 22 H -0.276 1.276 23 H -0.261 1.261 24 N -0.508 5.508 25 H 0.041 0.959 26 H 0.038 0.962 27 H 0.084 0.916 28 H 0.067 0.933 29 H 0.054 0.946 30 H 0.065 0.935 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.100 0.900 35 H 0.407 0.593 36 H 0.131 0.869 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.060 0.909 -11.501 15.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.302 6.302 3 C 0.026 3.974 4 H 0.079 0.921 5 C -0.231 4.231 6 C -0.138 4.138 7 C -0.176 4.176 8 C 0.298 3.702 9 O -0.400 6.400 10 N -0.292 5.292 11 C 0.122 3.878 12 C -0.337 4.337 13 C -0.075 4.075 14 C -0.312 4.312 15 C 0.152 3.848 16 C -0.468 4.468 17 H 0.103 0.897 18 C -0.153 4.153 19 N -0.345 5.345 20 Si 0.731 3.269 21 H -0.196 1.196 22 H -0.202 1.202 23 H -0.185 1.185 24 N -0.226 5.226 25 H 0.060 0.940 26 H 0.056 0.944 27 H 0.102 0.898 28 H 0.086 0.914 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.099 0.901 32 H 0.103 0.897 33 H 0.108 0.892 34 H 0.118 0.882 35 H 0.242 0.758 36 H 0.149 0.851 37 H 0.117 0.883 38 H 0.118 0.882 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.225 1.079 -11.444 15.384 hybrid contribution 0.026 0.029 0.702 0.703 sum -10.199 1.108 -10.742 14.854 Atomic orbital electron populations 1.22771 0.81474 1.02633 0.99771 1.87958 1.19284 1.27937 1.95058 1.22222 0.95044 0.84549 0.95621 0.92087 1.22264 1.02126 1.01935 0.96816 1.21460 0.95383 1.03901 0.93053 1.21622 0.95230 1.04625 0.96139 1.20626 0.91515 0.76435 0.81659 1.90605 1.35661 1.47545 1.66206 1.43275 1.08643 1.68096 1.09186 1.18550 0.84098 0.94557 0.90639 1.21621 0.92539 1.18732 1.00824 1.20818 0.96089 0.96363 0.94214 1.21721 0.98940 1.16548 0.93994 1.18190 0.85311 0.88062 0.93237 1.19553 0.93814 1.43411 0.90031 0.89694 1.26036 0.95256 0.93358 1.00649 1.70124 0.98462 1.29232 1.36718 0.86324 0.78952 0.79113 0.82474 1.19581 1.20153 1.18502 1.68071 1.28359 1.21771 1.04431 0.93995 0.94359 0.89779 0.91430 0.92692 0.91594 0.90091 0.89739 0.89231 0.88216 0.75752 0.85136 0.88342 0.88240 0.91873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.82 101.05 1.09 1.33 16 2 O -0.38 -4.21 9.88 -35.23 -0.35 -4.56 16 3 C 0.08 0.82 2.72 -26.73 -0.07 0.75 16 4 H 0.06 0.52 7.79 -51.93 -0.40 0.12 16 5 C -0.17 -1.50 9.53 37.15 0.35 -1.14 16 6 C -0.10 -1.20 4.21 -26.73 -0.11 -1.31 16 7 C -0.14 -1.73 5.60 -27.89 -0.16 -1.89 16 8 C 0.51 9.30 7.67 -10.99 -0.08 9.21 16 9 O -0.52 -11.19 12.78 5.56 0.07 -11.12 16 10 N -0.65 -13.22 5.41 -11.40 -0.06 -13.28 16 11 C 0.36 9.00 7.51 -154.98 -1.16 7.84 16 12 C -0.31 -7.81 8.83 -38.89 -0.34 -8.15 16 13 C -0.05 -1.21 10.15 -39.39 -0.40 -1.61 16 14 C -0.29 -7.40 9.83 -38.66 -0.38 -7.78 16 15 C 0.28 7.79 6.54 -85.00 -0.56 7.23 16 16 C -0.44 -11.75 9.13 -37.74 -0.34 -12.10 16 17 H 0.08 2.14 7.86 -52.49 -0.41 1.73 16 18 C 0.07 1.81 5.49 -17.35 -0.10 1.72 16 19 N -0.72 -18.89 11.49 55.55 0.64 -18.25 16 20 Si 0.91 18.52 29.56 -169.99 -5.03 13.50 16 21 H -0.27 -5.46 7.11 56.52 0.40 -5.05 16 22 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 23 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 24 N -0.51 -14.07 7.92 -10.25 -0.08 -14.15 16 25 H 0.04 0.29 8.08 -51.93 -0.42 -0.13 16 26 H 0.04 0.26 7.87 -51.93 -0.41 -0.15 16 27 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.05 0.42 7.87 -51.93 -0.41 0.01 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.08 1.09 8.10 -51.93 -0.42 0.67 16 32 H 0.08 1.02 8.10 -51.93 -0.42 0.60 16 33 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.10 1.19 7.82 -51.93 -0.41 0.79 16 35 H 0.41 7.43 8.83 -40.82 -0.36 7.07 16 36 H 0.13 3.21 5.33 -52.50 -0.28 2.93 16 37 H 0.10 2.06 8.06 -52.49 -0.42 1.64 16 38 H 0.10 2.33 8.06 -52.49 -0.42 1.91 16 39 H 0.27 6.36 8.29 -40.82 -0.34 6.02 16 LS Contribution 331.02 15.07 4.99 4.99 Total: -1.00 -31.96 331.02 -7.69 -39.65 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -5.61 Total: 9.13 kcal Atomic # 6 Polarization: -3.66 SS G_CDS: -2.26 Total: -5.92 kcal Atomic # 7 Polarization: -46.17 SS G_CDS: 0.50 Total: -45.68 kcal Atomic # 8 Polarization: -15.40 SS G_CDS: -0.28 Total: -15.68 kcal Atomic # 14 Polarization: 18.52 SS G_CDS: -5.03 Total: 13.50 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.96 -7.69 -39.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882472691.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.922 kcal (2) G-P(sol) polarization free energy of solvation -31.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds