Wall clock time and date at job start Tue Mar 31 2020 00:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 114.00000 * 2 1 4 4 H 1.08996 * 109.46814 * 30.01044 * 3 2 1 5 5 C 1.52993 * 109.47485 * 270.00276 * 3 2 1 6 6 C 1.53005 * 109.46838 * 150.00375 * 3 2 1 7 7 C 1.52997 * 109.47264 * 295.00389 * 6 3 2 8 8 C 1.50695 * 109.47438 * 180.02562 * 7 6 3 9 9 O 1.21278 * 119.99557 * 359.97438 * 8 7 6 10 10 N 1.34773 * 120.00231 * 180.02562 * 8 7 6 11 11 C 1.39267 * 119.99948 * 174.40059 * 10 8 7 12 12 C 1.39670 * 119.57670 * 341.10516 * 11 10 8 13 13 C 1.38655 * 119.49841 * 179.74378 * 12 11 10 14 14 C 1.38353 * 118.66735 * 0.52432 * 13 12 11 15 15 C 1.40580 * 119.12988 * 359.74127 * 14 13 12 16 16 C 1.41336 * 119.78998 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99468 * 6.33888 * 16 15 14 18 18 C 1.40021 * 120.00095 * 186.34463 * 16 15 14 19 19 N 1.30744 * 120.00016 * 353.65083 * 18 16 15 20 20 Si 1.86803 * 120.00082 * 173.65111 * 18 16 15 21 21 H 1.48503 * 109.47077 * 94.98120 * 20 18 16 22 22 H 1.48495 * 109.47069 * 214.98054 * 20 18 16 23 23 H 1.48496 * 109.46717 * 334.98286 * 20 18 16 24 24 N 1.31909 * 119.57563 * 161.37684 * 11 10 8 25 25 H 1.08999 * 109.46648 * 299.99336 * 1 2 3 26 26 H 1.08996 * 109.47251 * 59.99590 * 1 2 3 27 27 H 1.09001 * 109.47121 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47374 * 180.02562 * 5 3 2 29 29 H 1.09006 * 109.47103 * 59.99723 * 5 3 2 30 30 H 1.09000 * 109.47523 * 300.00673 * 5 3 2 31 31 H 1.09003 * 109.47073 * 55.00074 * 6 3 2 32 32 H 1.09000 * 109.46796 * 175.00440 * 6 3 2 33 33 H 1.09003 * 109.46818 * 299.99841 * 7 6 3 34 34 H 1.09002 * 109.47411 * 59.99542 * 7 6 3 35 35 H 0.97000 * 120.00047 * 354.39789 * 10 8 7 36 36 H 1.08004 * 120.25092 * 0.02562 * 12 11 10 37 37 H 1.07995 * 120.67075 * 180.26560 * 13 12 11 38 38 H 1.07999 * 120.43414 * 179.76759 * 14 13 12 39 39 H 0.97001 * 120.00025 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9992 0.5140 5 6 2.2176 1.7714 -1.4424 6 6 3.3590 1.2631 0.7212 7 6 3.1385 0.9182 2.1954 8 6 4.4668 0.8771 2.9059 9 8 5.4892 1.1012 2.2933 10 7 4.5187 0.5903 4.2217 11 6 5.7506 0.4374 4.8530 12 6 6.8913 0.1869 4.0871 13 6 8.1179 0.0402 4.7169 14 6 8.1716 0.1366 6.0960 15 6 6.9870 0.3845 6.8113 16 6 7.0259 0.4862 8.2205 17 1 7.9746 0.4760 8.7366 18 6 5.8345 0.6000 8.9473 19 7 4.6961 0.7372 8.3192 20 14 5.8717 0.5558 10.8145 21 1 5.9113 1.9435 11.3418 22 1 4.6547 -0.1303 11.3177 23 1 7.0787 -0.1807 11.2681 24 7 5.8241 0.5257 6.1671 25 1 -0.3632 0.5137 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 2.6614 2.7670 -1.4424 29 1 1.2568 1.8015 -1.9562 30 1 2.8828 1.0775 -1.9564 31 1 3.9931 0.5050 0.2616 32 1 3.8427 2.2369 0.6443 33 1 2.5043 1.6763 2.6550 34 1 2.6546 -0.0556 2.2723 35 1 3.6980 0.4905 4.7290 36 1 6.8194 0.1125 3.0120 37 1 9.0127 -0.1497 4.1428 38 1 9.1112 0.0232 6.6162 39 1 3.8708 0.8164 8.8228 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882472691.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:34:54 Heat of formation + Delta-G solvation = -71.723821 kcal Electronic energy + Delta-G solvation = -21000.409182 eV Core-core repulsion = 17714.254751 eV Total energy + Delta-G solvation = -3286.154431 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.45578 -39.71511 -39.12013 -36.04189 -35.10922 -34.68890 -32.34738 -31.73027 -30.58460 -27.62451 -27.39217 -25.80360 -23.54316 -23.27119 -21.92547 -21.23467 -19.35191 -18.62807 -17.88498 -17.73482 -16.70731 -16.59938 -16.27975 -16.14207 -15.87926 -15.48785 -15.18095 -14.60061 -14.55739 -14.15288 -13.87178 -13.79822 -13.34680 -13.19973 -12.92606 -12.86338 -12.65643 -12.56626 -12.40595 -12.20508 -12.05553 -11.85392 -11.58485 -11.49661 -11.04064 -10.59725 -10.46918 -9.99416 -9.65759 -8.99029 -8.32212 -6.51676 0.72455 1.08596 1.43050 1.51809 1.57898 1.78593 2.11628 2.24664 2.86608 2.92135 3.64266 3.81258 3.90044 4.12270 4.20150 4.33597 4.37212 4.51696 4.56372 4.62711 4.65658 4.71380 4.82605 4.87080 4.92554 4.93948 4.98445 5.00945 5.06717 5.23326 5.25730 5.35645 5.61482 5.67522 5.92129 6.06543 6.26181 6.36515 6.52059 6.77747 6.93197 7.24214 8.08967 8.44478 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.025230 B = 0.003566 C = 0.003203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.508482 B = 7849.106894 C = 8739.846667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.408 6.408 3 C 0.087 3.913 4 H 0.081 0.919 5 C -0.172 4.172 6 C -0.098 4.098 7 C -0.121 4.121 8 C 0.509 3.491 9 O -0.557 6.557 10 N -0.647 5.647 11 C 0.346 3.654 12 C -0.329 4.329 13 C -0.049 4.049 14 C -0.309 4.309 15 C 0.244 3.756 16 C -0.466 4.466 17 H 0.091 0.909 18 C 0.026 3.974 19 N -0.753 5.753 20 Si 0.990 3.010 21 H -0.264 1.264 22 H -0.267 1.267 23 H -0.257 1.257 24 N -0.534 5.534 25 H 0.052 0.948 26 H 0.050 0.950 27 H 0.090 0.910 28 H 0.075 0.925 29 H 0.067 0.933 30 H 0.053 0.947 31 H 0.059 0.941 32 H 0.082 0.918 33 H 0.120 0.880 34 H 0.113 0.887 35 H 0.416 0.584 36 H 0.134 0.866 37 H 0.130 0.870 38 H 0.113 0.887 39 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.539 1.228 -11.197 16.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.328 6.328 3 C 0.029 3.971 4 H 0.099 0.901 5 C -0.230 4.230 6 C -0.136 4.136 7 C -0.160 4.160 8 C 0.299 3.701 9 O -0.435 6.435 10 N -0.292 5.292 11 C 0.110 3.890 12 C -0.354 4.354 13 C -0.073 4.073 14 C -0.332 4.332 15 C 0.117 3.883 16 C -0.498 4.498 17 H 0.109 0.891 18 C -0.196 4.196 19 N -0.375 5.375 20 Si 0.810 3.190 21 H -0.189 1.189 22 H -0.191 1.191 23 H -0.181 1.181 24 N -0.254 5.254 25 H 0.070 0.930 26 H 0.068 0.932 27 H 0.109 0.891 28 H 0.094 0.906 29 H 0.086 0.914 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.100 0.900 33 H 0.138 0.862 34 H 0.131 0.869 35 H 0.253 0.747 36 H 0.151 0.849 37 H 0.148 0.852 38 H 0.131 0.869 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -11.727 1.397 -11.177 16.260 hybrid contribution 0.458 -0.068 0.510 0.689 sum -11.269 1.329 -10.667 15.573 Atomic orbital electron populations 1.22949 0.79905 1.03512 1.00861 1.87924 1.21080 1.28537 1.95239 1.22195 0.93950 0.84762 0.96174 0.90097 1.22250 1.02669 1.02003 0.96066 1.21441 0.96656 1.02995 0.92514 1.21652 0.92042 1.06378 0.95967 1.21677 0.93214 0.74612 0.80636 1.90575 1.37547 1.48776 1.66555 1.43385 1.07485 1.68307 1.10031 1.18960 0.86029 0.93644 0.90357 1.21842 0.93124 1.19387 1.01021 1.21181 0.97111 0.94990 0.94068 1.21902 0.99019 1.17557 0.94720 1.18720 0.86357 0.88850 0.94334 1.19944 0.95060 1.44455 0.90303 0.89073 1.26974 0.94320 0.92362 1.05952 1.70191 0.99289 1.28869 1.39119 0.85087 0.79252 0.79348 0.75337 1.18851 1.19099 1.18076 1.68110 1.28665 1.23128 1.05448 0.92958 0.93175 0.89146 0.90601 0.91370 0.92767 0.92232 0.89996 0.86229 0.86872 0.74664 0.84902 0.85204 0.86851 0.90928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 10.82 113.37 1.23 1.54 16 2 O -0.41 -8.18 9.88 -148.98 -1.47 -9.65 16 3 C 0.09 1.52 2.72 30.59 0.08 1.61 16 4 H 0.08 1.11 7.79 -2.39 -0.02 1.09 16 5 C -0.17 -2.66 9.53 71.98 0.69 -1.97 16 6 C -0.10 -2.23 4.21 30.60 0.13 -2.10 16 7 C -0.12 -2.87 5.60 29.85 0.17 -2.71 16 8 C 0.51 18.36 7.67 87.66 0.67 19.03 16 9 O -0.56 -23.97 12.78 -3.02 -0.04 -24.01 16 10 N -0.65 -26.49 5.41 -308.37 -1.67 -28.16 16 11 C 0.35 17.80 7.51 133.25 1.00 18.80 16 12 C -0.33 -16.70 8.83 22.72 0.20 -16.50 16 13 C -0.05 -2.39 10.15 22.40 0.23 -2.16 16 14 C -0.31 -16.09 9.83 22.87 0.22 -15.87 16 15 C 0.24 13.94 6.54 40.19 0.26 14.21 16 16 C -0.47 -25.49 9.13 23.46 0.21 -25.27 16 17 H 0.09 4.66 7.86 -2.91 -0.02 4.63 16 18 C 0.03 1.31 5.49 85.29 0.47 1.77 16 19 N -0.75 -39.44 11.49 21.84 0.25 -39.19 16 20 Si 0.99 37.54 29.56 68.60 2.03 39.57 16 21 H -0.26 -9.65 7.11 99.48 0.71 -8.95 16 22 H -0.27 -9.59 7.11 99.48 0.71 -8.89 16 23 H -0.26 -9.49 7.11 99.48 0.71 -8.78 16 24 N -0.53 -30.25 7.92 -186.36 -1.48 -31.73 16 25 H 0.05 0.58 8.08 -2.39 -0.02 0.56 16 26 H 0.05 0.54 7.87 -2.39 -0.02 0.52 16 27 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.07 0.87 7.87 -2.38 -0.02 0.85 16 30 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.06 1.60 8.10 -2.39 -0.02 1.58 16 32 H 0.08 1.89 8.10 -2.39 -0.02 1.87 16 33 H 0.12 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.11 2.47 7.82 -2.39 -0.02 2.46 16 35 H 0.42 15.14 8.83 -92.71 -0.82 14.32 16 36 H 0.13 6.64 5.33 -3.15 -0.02 6.62 16 37 H 0.13 5.32 8.06 -2.91 -0.02 5.30 16 38 H 0.11 5.38 8.06 -2.91 -0.02 5.35 16 39 H 0.28 13.08 8.29 -92.71 -0.77 12.31 16 Total: -1.00 -70.21 331.02 3.42 -66.79 By element: Atomic # 1 Polarization: 35.78 SS G_CDS: 0.24 Total: 36.02 kcal Atomic # 6 Polarization: -15.19 SS G_CDS: 5.56 Total: -9.63 kcal Atomic # 7 Polarization: -96.19 SS G_CDS: -2.89 Total: -99.09 kcal Atomic # 8 Polarization: -32.15 SS G_CDS: -1.51 Total: -33.66 kcal Atomic # 14 Polarization: 37.54 SS G_CDS: 2.03 Total: 39.57 kcal Total: -70.21 3.42 -66.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882472691.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.937 kcal (2) G-P(sol) polarization free energy of solvation -70.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds