Wall clock time and date at job start Tue Mar 31 2020 00:07:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47081 * 2 1 4 4 O 1.42899 * 109.47276 * 119.99799 * 2 1 3 5 5 C 1.42905 * 113.99613 * 90.00137 * 4 2 1 6 6 C 1.53004 * 109.46941 * 179.97438 * 5 4 2 7 7 C 1.50700 * 109.47273 * 179.97438 * 6 5 4 8 8 O 1.21265 * 119.99575 * 4.99313 * 7 6 5 9 9 N 1.34769 * 120.00298 * 184.99605 * 7 6 5 10 10 C 1.37215 * 120.00074 * 4.96722 * 9 7 6 11 11 H 1.08000 * 119.99681 * 50.16232 * 10 9 7 12 12 C 1.38894 * 120.00305 * 230.17217 * 10 9 7 13 13 N 1.31414 * 119.99700 * 7.35659 * 12 10 9 14 14 Si 1.86797 * 120.00334 * 187.36358 * 12 10 9 15 15 H 1.48507 * 109.47014 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47270 * 119.99653 * 14 12 10 17 17 H 1.48498 * 109.47091 * 239.99766 * 14 12 10 18 18 C 1.39420 * 120.00387 * 184.97305 * 9 7 6 19 19 C 1.39065 * 119.70271 * 184.99816 * 18 9 7 20 20 C 1.38375 * 119.10388 * 180.02562 * 19 18 9 21 21 C 1.38836 * 118.48958 * 359.97438 * 20 19 18 22 22 C 1.38145 * 119.31154 * 0.25742 * 21 20 19 23 23 N 1.31880 * 120.85262 * 359.46924 * 22 21 20 24 24 H 1.08996 * 109.47011 * 59.99587 * 1 2 3 25 25 H 1.08996 * 109.46965 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.47054 * 300.00181 * 1 2 3 27 27 H 1.09000 * 109.47127 * 240.00188 * 2 1 3 28 28 H 1.09001 * 109.47413 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.47235 * 300.00518 * 3 2 1 30 30 H 1.09007 * 109.47324 * 59.99984 * 3 2 1 31 31 H 1.08996 * 109.47208 * 60.00335 * 5 4 2 32 32 H 1.08999 * 109.46613 * 299.99871 * 5 4 2 33 33 H 1.09001 * 109.46715 * 59.99687 * 6 5 4 34 34 H 1.09003 * 109.47220 * 299.99910 * 6 5 4 35 35 H 0.96996 * 119.99886 * 174.99314 * 13 12 10 36 36 H 1.08003 * 120.44665 * 0.04076 * 19 18 9 37 37 H 1.07996 * 120.76052 * 180.02562 * 20 19 18 38 38 H 1.08001 * 120.34064 * 179.97438 * 21 20 19 39 39 H 1.07995 * 119.57192 * 179.75152 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.2001 -2.0782 0.9886 6 6 2.7092 -2.6925 2.2941 7 6 2.9130 -4.1738 2.1065 8 8 2.7619 -4.6726 1.0115 9 7 3.2630 -4.9441 3.1554 10 6 3.3345 -4.3996 4.4129 11 1 2.5105 -3.8163 4.7964 12 6 4.4668 -4.5984 5.1924 13 7 5.5252 -5.1821 4.6768 14 14 4.4849 -4.0362 6.9737 15 1 3.1798 -3.4120 7.3091 16 1 4.7171 -5.2053 7.8594 17 1 5.5724 -3.0439 7.1685 18 6 3.5525 -6.2943 2.9630 19 6 3.8111 -7.1069 4.0615 20 6 4.0976 -8.4450 3.8562 21 6 4.1152 -8.9263 2.5540 22 6 3.8536 -8.0609 1.5095 23 7 3.5784 -6.7911 1.7360 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 3.1300 1.4426 -0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6767 1.9564 0.8900 31 1 2.9320 -2.2466 0.1986 32 1 1.2538 -2.5432 0.7124 33 1 1.9777 -2.5239 3.0844 34 1 3.6556 -2.2272 2.5698 35 1 6.3403 -5.2559 5.1975 36 1 3.7883 -6.6992 5.0613 37 1 4.3020 -9.1004 4.6899 38 1 4.3357 -9.9655 2.3594 39 1 3.8702 -8.4299 0.4947 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892464310.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:07:02 Heat of formation + Delta-G solvation = -35.734100 kcal Electronic energy + Delta-G solvation = -21726.954454 eV Core-core repulsion = 18442.360654 eV Total energy + Delta-G solvation = -3284.593799 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.75476 -38.34793 -37.62919 -35.11196 -33.04054 -32.11855 -31.05308 -30.42388 -28.85299 -27.21316 -25.31036 -23.84033 -22.25874 -21.51350 -21.19301 -19.19190 -17.88386 -16.88464 -15.92088 -15.63655 -15.39121 -15.06971 -14.80166 -14.57537 -14.18043 -14.05034 -13.49427 -13.24829 -12.92649 -12.69546 -12.37131 -12.24285 -12.16621 -12.03768 -11.70626 -11.56109 -11.41186 -11.17896 -10.91858 -10.78628 -10.71298 -10.49380 -10.39908 -9.38766 -9.25849 -9.01995 -8.89954 -8.67361 -7.91829 -7.00883 -6.44838 -4.52262 2.25763 2.46280 3.01063 3.10877 3.14644 3.67761 3.82945 3.97644 4.54442 4.72752 4.95344 5.08571 5.21497 5.25493 5.52155 5.56677 5.60522 5.63772 5.73149 5.74137 5.80327 5.84859 5.94823 6.06358 6.15274 6.19218 6.23735 6.37789 6.48079 6.49873 6.59852 6.85887 7.11890 7.21621 7.28547 7.53747 7.57303 7.95003 8.20841 8.82220 8.89972 9.33232 9.77512 10.44520 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.016180 B = 0.005426 C = 0.004247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.157845 B = 5159.102074 C = 6591.489615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.080 3.920 3 C -0.148 4.148 4 O -0.385 6.385 5 C 0.079 3.921 6 C -0.116 4.116 7 C 0.496 3.504 8 O -0.527 6.527 9 N -0.386 5.386 10 C -0.360 4.360 11 H 0.100 0.900 12 C 0.051 3.949 13 N -0.845 5.845 14 Si 0.920 3.080 15 H -0.263 1.263 16 H -0.276 1.276 17 H -0.276 1.276 18 C 0.386 3.614 19 C -0.142 4.142 20 C -0.081 4.081 21 C -0.237 4.237 22 C 0.106 3.894 23 N -0.496 5.496 24 H 0.061 0.939 25 H 0.057 0.943 26 H 0.062 0.938 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.054 0.946 32 H 0.050 0.950 33 H 0.093 0.907 34 H 0.099 0.901 35 H 0.276 0.724 36 H 0.136 0.864 37 H 0.115 0.885 38 H 0.113 0.887 39 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.559 4.581 -2.605 6.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.022 3.978 3 C -0.206 4.206 4 O -0.305 6.305 5 C 0.002 3.998 6 C -0.156 4.156 7 C 0.286 3.714 8 O -0.404 6.404 9 N -0.098 5.098 10 C -0.488 4.488 11 H 0.117 0.883 12 C -0.158 4.158 13 N -0.477 5.477 14 Si 0.745 3.255 15 H -0.187 1.187 16 H -0.201 1.201 17 H -0.202 1.202 18 C 0.156 3.844 19 C -0.166 4.166 20 C -0.107 4.107 21 C -0.260 4.260 22 C -0.053 4.053 23 N -0.212 5.212 24 H 0.080 0.920 25 H 0.076 0.924 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.111 0.889 34 H 0.117 0.883 35 H 0.086 0.914 36 H 0.154 0.846 37 H 0.133 0.867 38 H 0.131 0.869 39 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -4.622 5.003 -3.628 7.717 hybrid contribution 0.545 -0.513 1.532 1.705 sum -4.077 4.490 -2.096 6.417 Atomic orbital electron populations 1.22299 0.96362 1.02435 1.02120 1.22014 0.93433 0.93611 0.88721 1.21854 1.01827 0.94780 1.02104 1.87868 1.86564 1.20859 1.35230 1.22262 0.99862 0.79937 0.97754 1.21214 1.04130 0.92798 0.97484 1.20657 0.78509 0.88310 0.83949 1.90657 1.50246 1.74867 1.24638 1.41150 1.57432 1.03317 1.07931 1.19482 1.03368 1.35579 0.90342 0.88275 1.25633 0.94594 0.94974 1.00633 1.69975 1.01845 1.38002 1.37914 0.85968 0.79112 0.78831 0.81621 1.18686 1.20150 1.20166 1.18801 0.91746 0.85519 0.88355 1.21507 1.02282 0.92403 1.00388 1.21153 0.98023 0.95106 0.96397 1.21636 1.09964 1.00237 0.94129 1.22256 0.95907 0.88867 0.98284 1.67591 1.16936 1.14203 1.22443 0.92042 0.92354 0.91903 0.92337 0.92022 0.91645 0.91901 0.92799 0.93175 0.88894 0.88297 0.91386 0.84633 0.86691 0.86921 0.84533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.99 9.53 37.16 0.35 -1.64 16 2 C 0.08 1.04 3.34 -26.73 -0.09 0.95 16 3 C -0.15 -1.60 9.56 37.16 0.36 -1.24 16 4 O -0.39 -6.37 9.99 -35.23 -0.35 -6.72 16 5 C 0.08 1.41 5.05 37.16 0.19 1.60 16 6 C -0.12 -2.35 4.98 -27.88 -0.14 -2.49 16 7 C 0.50 12.21 7.58 -10.99 -0.08 12.13 16 8 O -0.53 -14.00 14.28 5.57 0.08 -13.92 16 9 N -0.39 -9.96 2.68 -60.71 -0.16 -10.12 16 10 C -0.36 -8.79 7.67 -14.90 -0.11 -8.91 16 11 H 0.10 2.27 7.36 -52.49 -0.39 1.89 16 12 C 0.05 1.22 3.59 -17.49 -0.06 1.16 16 13 N -0.85 -21.75 11.12 55.49 0.62 -21.13 16 14 Si 0.92 18.33 29.56 -169.99 -5.03 13.30 16 15 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 16 H -0.28 -5.48 7.11 56.52 0.40 -5.07 16 17 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 18 C 0.39 10.05 6.63 -154.64 -1.02 9.03 16 19 C -0.14 -3.37 7.61 -39.22 -0.30 -3.67 16 20 C -0.08 -1.65 10.17 -39.31 -0.40 -2.05 16 21 C -0.24 -4.59 10.11 -39.39 -0.40 -4.99 16 22 C 0.11 2.27 11.18 -17.57 -0.20 2.08 16 23 N -0.50 -12.76 7.92 -12.34 -0.10 -12.86 16 24 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 25 H 0.06 0.70 7.87 -51.93 -0.41 0.30 16 26 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 27 H 0.06 0.74 7.79 -51.93 -0.40 0.34 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.67 8.14 -51.92 -0.42 0.25 16 31 H 0.05 1.00 7.99 -51.93 -0.41 0.58 16 32 H 0.05 0.90 7.87 -51.93 -0.41 0.49 16 33 H 0.09 1.77 7.54 -51.93 -0.39 1.38 16 34 H 0.10 2.02 8.14 -51.93 -0.42 1.60 16 35 H 0.28 6.68 8.32 -40.82 -0.34 6.34 16 36 H 0.14 3.28 5.55 -52.48 -0.29 2.99 16 37 H 0.12 1.97 8.06 -52.49 -0.42 1.55 16 38 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 39 H 0.14 2.47 8.06 -52.49 -0.42 2.05 16 LS Contribution 327.16 15.07 4.93 4.93 Total: -1.00 -29.99 327.16 -7.56 -37.56 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -5.65 Total: 7.00 kcal Atomic # 6 Polarization: 3.87 SS G_CDS: -1.91 Total: 1.96 kcal Atomic # 7 Polarization: -44.47 SS G_CDS: 0.36 Total: -44.11 kcal Atomic # 8 Polarization: -20.36 SS G_CDS: -0.27 Total: -20.63 kcal Atomic # 14 Polarization: 18.33 SS G_CDS: -5.03 Total: 13.30 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.99 -7.56 -37.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892464310.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.825 kcal (2) G-P(sol) polarization free energy of solvation -29.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds