Wall clock time and date at job start Tue Mar 31 2020 00:33:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47282 * 2 1 4 4 C 1.53010 * 109.47196 * 119.99713 * 2 1 3 5 5 C 1.50696 * 109.47102 * 185.00127 * 4 2 1 6 6 C 1.38382 * 120.00211 * 124.97735 * 5 4 2 7 7 N 1.32124 * 120.00287 * 180.02562 * 6 5 4 8 8 C 1.32153 * 119.99716 * 0.02562 * 7 6 5 9 9 C 1.38341 * 120.00474 * 359.97438 * 8 7 6 10 10 N 1.32127 * 120.00458 * 305.00104 * 5 4 2 11 11 O 1.45202 * 109.47330 * 239.99743 * 2 1 3 12 12 C 1.34230 * 116.99638 * 89.99843 * 11 2 1 13 13 O 1.20825 * 120.00258 * 0.02562 * 12 11 2 14 14 C 1.50700 * 119.99511 * 180.02562 * 12 11 2 15 15 C 1.53009 * 109.46734 * 179.97438 * 14 12 11 16 16 C 1.53001 * 109.46833 * 179.97438 * 15 14 12 17 17 C 1.50701 * 109.46954 * 180.02562 * 16 15 14 18 18 H 1.08000 * 120.00343 * 0.02562 * 17 16 15 19 19 C 1.37874 * 119.99889 * 180.02562 * 17 16 15 20 20 N 1.31513 * 120.00434 * 359.97438 * 19 17 16 21 21 Si 1.86808 * 119.99929 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.46908 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47057 * 119.99717 * 21 19 17 24 24 H 1.48496 * 109.46726 * 239.99453 * 21 19 17 25 25 H 1.08995 * 109.47119 * 59.99976 * 1 2 3 26 26 H 1.09006 * 109.46616 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47242 * 300.00050 * 1 2 3 28 28 H 1.08999 * 109.46773 * 65.00267 * 4 2 1 29 29 H 1.08996 * 109.46953 * 305.00405 * 4 2 1 30 30 H 1.08000 * 120.00109 * 0.02562 * 6 5 4 31 31 H 1.08002 * 120.00395 * 179.97438 * 8 7 6 32 32 H 1.08000 * 120.00556 * 179.97438 * 9 8 7 33 33 H 1.09004 * 109.47302 * 299.99721 * 14 12 11 34 34 H 1.08997 * 109.47442 * 60.00280 * 14 12 11 35 35 H 1.08996 * 109.47245 * 300.00065 * 15 14 12 36 36 H 1.09004 * 109.46838 * 60.00370 * 15 14 12 37 37 H 1.08996 * 109.47473 * 300.00188 * 16 15 14 38 38 H 1.09004 * 109.46892 * 60.00665 * 16 15 14 39 39 H 0.96993 * 120.00562 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.6148 1.3128 6 6 4.1516 -0.0937 2.4405 7 7 5.4684 0.0000 2.4959 8 6 6.2031 -0.4034 1.4742 9 6 5.5936 -0.9244 0.3469 10 7 4.2766 -1.0187 0.2916 11 8 2.0140 -0.6845 -1.1855 12 6 2.2171 0.0640 -2.2811 13 8 1.9982 1.2518 -2.2504 14 6 2.7183 -0.5773 -3.5494 15 6 2.8624 0.4888 -4.6374 16 6 3.3718 -0.1622 -5.9249 17 6 3.5143 0.8879 -6.9964 18 1 3.2667 1.9168 -6.7806 19 6 3.9607 0.5352 -8.2523 20 7 4.2626 -0.7175 -8.5151 21 14 4.1380 1.8371 -9.5802 22 1 3.7377 3.1587 -9.0343 23 1 5.5518 1.8948 -10.0311 24 1 3.2651 1.4923 -10.7310 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.7517 -1.7715 1.2057 29 1 1.6054 -0.2617 2.1370 30 1 3.5512 0.2364 3.2753 31 1 7.2794 -0.3265 1.5193 32 1 6.1940 -1.2538 -0.4882 33 1 3.6872 -1.0409 -3.3639 34 1 2.0088 -1.3370 -3.8774 35 1 1.8933 0.9520 -4.8228 36 1 3.5717 1.2488 -4.3097 37 1 4.3409 -0.6251 -5.7393 38 1 2.6627 -0.9224 -6.2528 39 1 4.5771 -0.9656 -9.3985 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893398199.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:31 Heat of formation + Delta-G solvation = -63.004150 kcal Electronic energy + Delta-G solvation = -20975.953705 eV Core-core repulsion = 17690.177387 eV Total energy + Delta-G solvation = -3285.776318 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.33216 -40.17220 -36.92987 -34.74674 -34.24559 -33.73146 -32.09279 -31.42952 -28.07188 -27.68522 -24.91720 -24.33253 -23.39802 -21.82500 -20.61004 -19.73432 -17.82212 -17.39065 -17.21258 -16.54723 -16.29710 -16.00467 -15.52993 -14.94330 -14.44436 -14.31971 -13.95905 -13.63342 -13.41591 -12.97985 -12.62995 -12.41193 -12.21318 -12.11449 -11.83127 -11.70560 -11.46066 -11.34787 -11.05890 -10.83158 -10.62912 -10.54994 -10.49832 -10.05954 -9.70311 -9.46018 -9.36651 -9.20632 -9.05131 -8.33128 -5.98312 -3.99991 0.52425 0.93960 2.64116 2.94334 3.33245 3.40599 3.46046 3.47111 3.77042 4.02751 4.15960 4.42858 4.48698 4.62355 4.83431 4.86550 4.95815 5.09478 5.18667 5.21408 5.33061 5.37805 5.41457 5.59691 5.69370 5.71137 5.81046 5.94198 6.12741 6.20739 6.67067 6.75329 6.87265 7.06475 7.11736 7.58593 7.69527 7.81591 8.01925 8.18334 8.45083 9.07079 9.64056 11.13170 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.021633 B = 0.003432 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.007879 B = 8157.091394 C = 8973.381584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.090 3.910 3 H 0.081 0.919 4 C -0.064 4.064 5 C 0.078 3.922 6 C 0.048 3.952 7 N -0.439 5.439 8 C 0.041 3.959 9 C 0.057 3.943 10 N -0.414 5.414 11 O -0.336 6.336 12 C 0.463 3.537 13 O -0.517 6.517 14 C -0.110 4.110 15 C -0.098 4.098 16 C 0.021 3.979 17 C -0.518 4.518 18 H 0.056 0.944 19 C 0.056 3.944 20 N -0.896 5.896 21 Si 0.892 3.108 22 H -0.272 1.272 23 H -0.284 1.284 24 H -0.284 1.284 25 H 0.066 0.934 26 H 0.068 0.932 27 H 0.072 0.928 28 H 0.100 0.900 29 H 0.103 0.897 30 H 0.167 0.833 31 H 0.169 0.831 32 H 0.172 0.828 33 H 0.100 0.900 34 H 0.098 0.902 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.018 0.982 38 H 0.018 0.982 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.522 -2.687 23.496 23.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.035 3.965 3 H 0.099 0.901 4 C -0.103 4.103 5 C -0.062 4.062 6 C -0.112 4.112 7 N -0.154 5.154 8 C -0.119 4.119 9 C -0.103 4.103 10 N -0.129 5.129 11 O -0.253 6.253 12 C 0.307 3.693 13 O -0.405 6.405 14 C -0.148 4.148 15 C -0.136 4.136 16 C -0.016 4.016 17 C -0.557 4.557 18 H 0.075 0.925 19 C -0.145 4.145 20 N -0.536 5.536 21 Si 0.720 3.280 22 H -0.197 1.197 23 H -0.210 1.210 24 H -0.210 1.210 25 H 0.085 0.915 26 H 0.087 0.913 27 H 0.091 0.909 28 H 0.118 0.882 29 H 0.121 0.879 30 H 0.184 0.816 31 H 0.187 0.813 32 H 0.190 0.810 33 H 0.118 0.882 34 H 0.116 0.884 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.036 0.964 38 H 0.036 0.964 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.528 -2.436 23.407 23.669 hybrid contribution 0.231 0.752 -0.764 1.096 sum -2.297 -1.684 22.643 22.822 Atomic orbital electron populations 1.22199 0.93974 1.03177 1.03286 1.22433 0.94174 0.96976 0.82959 0.90124 1.20729 0.88235 1.03701 0.97587 1.22219 0.97755 0.95357 0.90918 1.23603 0.91778 0.97397 0.98450 1.68433 1.06442 1.12490 1.27996 1.23793 1.01782 0.95837 0.90477 1.23946 0.91636 0.95900 0.98823 1.68432 1.06142 1.11739 1.26593 1.86682 1.76798 1.41946 1.19843 1.24318 0.73498 0.86098 0.85357 1.90613 1.48523 1.17078 1.84268 1.21640 1.03002 1.01143 0.89001 1.21556 1.01570 0.96038 0.94447 1.19126 0.96336 0.96053 0.90087 1.21285 1.43743 0.94771 0.95851 0.92540 1.25016 0.95524 0.95324 0.98616 1.69969 1.45527 1.16405 1.21693 0.86539 0.77662 0.82039 0.81809 1.19708 1.21018 1.21020 0.91489 0.91334 0.90885 0.88209 0.87886 0.81589 0.81348 0.81049 0.88183 0.88357 0.92588 0.92669 0.96388 0.96373 0.93080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.58 9.55 37.16 0.35 -1.22 16 2 C 0.09 1.03 2.54 -26.73 -0.07 0.96 16 3 H 0.08 1.06 7.16 -51.93 -0.37 0.69 16 4 C -0.06 -0.53 5.37 -27.88 -0.15 -0.68 16 5 C 0.08 0.82 6.18 -82.41 -0.51 0.31 16 6 C 0.05 0.45 10.85 -17.37 -0.19 0.26 16 7 N -0.44 -4.69 10.50 -13.06 -0.14 -4.83 16 8 C 0.04 0.38 11.22 -17.38 -0.20 0.19 16 9 C 0.06 0.59 11.22 -17.37 -0.20 0.40 16 10 N -0.41 -5.15 9.11 -9.29 -0.08 -5.24 16 11 O -0.34 -4.89 8.61 -39.26 -0.34 -5.23 16 12 C 0.46 7.97 7.93 36.01 0.29 8.26 16 13 O -0.52 -10.24 15.20 -18.75 -0.28 -10.52 16 14 C -0.11 -1.93 5.81 -27.88 -0.16 -2.09 16 15 C -0.10 -2.13 4.44 -26.73 -0.12 -2.25 16 16 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 17 C -0.52 -14.97 9.11 -34.44 -0.31 -15.28 16 18 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 20 N -0.90 -27.01 13.29 55.43 0.74 -26.27 16 21 Si 0.89 21.97 29.54 -169.99 -5.02 16.94 16 22 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 23 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 25 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.10 0.48 7.89 -51.93 -0.41 0.07 16 30 H 0.17 0.99 7.95 -52.49 -0.42 0.57 16 31 H 0.17 1.05 8.06 -52.49 -0.42 0.63 16 32 H 0.17 1.39 8.06 -52.49 -0.42 0.97 16 33 H 0.10 1.65 8.14 -51.93 -0.42 1.22 16 34 H 0.10 1.58 8.14 -51.93 -0.42 1.16 16 35 H 0.06 1.25 8.10 -51.93 -0.42 0.82 16 36 H 0.05 1.24 8.10 -51.93 -0.42 0.82 16 37 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 338.72 15.07 5.10 5.10 Total: -1.00 -34.94 338.72 -7.33 -42.27 By element: Atomic # 1 Polarization: 2.81 SS G_CDS: -5.81 Total: -3.00 kcal Atomic # 6 Polarization: -7.73 SS G_CDS: -1.50 Total: -9.23 kcal Atomic # 7 Polarization: -36.86 SS G_CDS: 0.51 Total: -36.34 kcal Atomic # 8 Polarization: -15.13 SS G_CDS: -0.62 Total: -15.75 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -34.94 -7.33 -42.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893398199.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.735 kcal (2) G-P(sol) polarization free energy of solvation -34.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds