Wall clock time and date at job start Tue Mar 31 2020 00:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47751 * 2 1 4 4 O 1.42899 * 109.47269 * 240.00393 * 2 1 3 5 5 C 1.50696 * 109.47470 * 120.00297 * 2 1 3 6 6 C 1.38065 * 119.57391 * 124.99699 * 5 2 1 7 7 C 1.38845 * 119.33104 * 179.97438 * 6 5 2 8 8 C 1.38343 * 118.50209 * 0.02562 * 7 6 5 9 9 C 1.39095 * 119.09718 * 359.97438 * 8 7 6 10 10 N 1.39014 * 119.70423 * 180.02562 * 9 8 7 11 11 C 1.47904 * 110.99986 * 59.86988 * 10 9 8 12 12 C 1.53987 * 107.06067 * 214.15754 * 11 10 9 13 13 C 1.54594 * 105.13958 * 1.22783 * 12 11 10 14 14 O 1.42897 * 110.72193 * 263.42115 * 13 12 11 15 15 C 1.50703 * 110.72497 * 140.31721 * 13 12 11 16 16 H 1.08003 * 119.99774 * 241.45127 * 15 13 12 17 17 C 1.37871 * 120.00059 * 61.45005 * 15 13 12 18 18 N 1.31514 * 120.00165 * 0.02562 * 17 15 13 19 19 Si 1.86800 * 119.99979 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.46935 * 90.00351 * 19 17 15 21 21 H 1.48499 * 109.47170 * 210.00214 * 19 17 15 22 22 H 1.48502 * 109.47170 * 330.00340 * 19 17 15 23 23 C 1.48537 * 110.99667 * 302.47791 * 10 9 8 24 24 N 1.31943 * 119.57243 * 304.97847 * 5 2 1 25 25 H 1.08998 * 109.46954 * 299.99649 * 1 2 3 26 26 H 1.08999 * 109.46973 * 59.99726 * 1 2 3 27 27 H 1.09000 * 109.47097 * 179.97438 * 1 2 3 28 28 H 0.96699 * 113.99718 * 299.99888 * 4 2 1 29 29 H 1.08000 * 120.33639 * 0.02601 * 6 5 2 30 30 H 1.07994 * 120.75308 * 179.72136 * 7 6 5 31 31 H 1.08004 * 120.44953 * 179.97438 * 8 7 6 32 32 H 1.08998 * 109.91489 * 333.51422 * 11 10 9 33 33 H 1.09003 * 109.91233 * 94.79899 * 11 10 9 34 34 H 1.09007 * 110.30775 * 120.14443 * 12 11 10 35 35 H 1.08997 * 110.30961 * 242.21171 * 12 11 10 36 36 H 0.96703 * 114.00302 * 298.54082 * 14 13 12 37 37 H 0.96998 * 120.00086 * 180.02562 * 18 17 15 38 38 H 1.08997 * 110.66700 * 278.15042 * 23 10 9 39 39 H 1.09001 * 110.66763 * 41.28991 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0277 0.0000 4 8 2.0064 -0.6735 -1.1668 5 6 2.0324 -0.7104 1.2304 6 6 2.9089 -1.7687 1.0960 7 6 3.3690 -2.4193 2.2330 8 6 2.9285 -1.9802 3.4687 9 6 2.0450 -0.9076 3.5298 10 7 1.5947 -0.4556 4.7649 11 6 2.7240 -0.0138 5.6116 12 6 2.3594 -0.3591 7.0673 13 6 0.9775 -1.0471 6.9851 14 8 -0.0701 -0.1097 7.2411 15 6 0.9005 -2.2055 7.9460 16 1 0.7396 -3.2064 7.5734 17 6 1.0356 -1.9876 9.3007 18 7 1.2311 -0.7688 9.7544 19 14 0.9394 -3.4233 10.4918 20 1 2.2978 -3.9865 10.6989 21 1 0.3951 -2.9531 11.7910 22 1 0.0489 -4.4718 9.9324 23 6 0.9257 -1.5464 5.5192 24 7 1.6293 -0.3128 2.4221 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.7210 -1.5951 -1.2329 29 1 3.2340 -2.0868 0.1164 30 1 4.0515 -3.2526 2.1544 31 1 3.2660 -2.4637 4.3736 32 1 3.6335 -0.5400 5.3217 33 1 2.8659 1.0622 5.5094 34 1 3.0971 -1.0410 7.4905 35 1 2.2966 0.5489 7.6671 36 1 -0.0350 0.2888 8.1215 37 1 1.3264 -0.6155 10.7074 38 1 -0.1065 -1.6652 5.1896 39 1 1.4751 -2.4816 5.4117 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894350355.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:27:11 Heat of formation + Delta-G solvation = -48.860661 kcal Electronic energy + Delta-G solvation = -21924.988725 eV Core-core repulsion = 18639.825716 eV Total energy + Delta-G solvation = -3285.163010 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.62398 -38.54966 -37.10626 -34.76216 -32.74639 -32.16294 -31.43429 -29.89731 -28.25318 -28.09829 -24.84386 -24.44509 -22.59612 -21.80219 -20.26558 -19.59601 -17.78278 -17.09769 -16.43912 -16.04719 -15.70329 -15.30789 -14.94529 -14.72457 -14.36789 -13.84367 -13.78746 -13.32470 -13.01142 -12.54179 -12.48126 -12.11370 -11.99005 -11.95910 -11.60067 -11.35806 -11.31973 -11.04918 -10.79992 -10.68229 -10.53395 -10.44884 -9.97579 -9.72921 -9.43268 -9.28177 -8.68278 -8.59295 -8.15762 -7.87648 -6.25790 -4.34798 1.10694 1.36628 3.18542 3.26757 3.30079 3.74681 3.76782 4.17170 4.26460 4.51107 4.82562 5.00623 5.02204 5.08652 5.13904 5.23710 5.37468 5.54485 5.67446 5.71202 5.79511 5.83361 5.88074 6.04882 6.10953 6.18707 6.21258 6.32728 6.45094 6.63961 6.77579 6.93024 7.22928 7.31756 7.41371 7.42761 7.60195 7.75844 8.10214 8.33178 8.67633 9.34552 9.51623 10.81290 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.033833 B = 0.004106 C = 0.003962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.385806 B = 6818.414611 C = 7064.914830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.158 3.842 3 H 0.118 0.882 4 O -0.557 6.557 5 C 0.098 3.902 6 C -0.185 4.185 7 C -0.065 4.065 8 C -0.203 4.203 9 C 0.322 3.678 10 N -0.480 5.480 11 C 0.046 3.954 12 C -0.128 4.128 13 C 0.260 3.740 14 O -0.578 6.578 15 C -0.540 4.540 16 H 0.061 0.939 17 C 0.073 3.927 18 N -0.893 5.893 19 Si 0.900 3.100 20 H -0.280 1.280 21 H -0.284 1.284 22 H -0.273 1.273 23 C 0.063 3.937 24 N -0.460 5.460 25 H 0.082 0.918 26 H 0.065 0.935 27 H 0.055 0.945 28 H 0.376 0.624 29 H 0.137 0.863 30 H 0.132 0.868 31 H 0.137 0.863 32 H 0.035 0.965 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.072 0.928 36 H 0.378 0.622 37 H 0.268 0.732 38 H 0.077 0.923 39 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.823 -1.822 -14.662 15.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.098 3.902 3 H 0.135 0.865 4 O -0.362 6.362 5 C -0.041 4.041 6 C -0.205 4.205 7 C -0.092 4.092 8 C -0.226 4.226 9 C 0.092 3.908 10 N -0.202 5.202 11 C -0.080 4.080 12 C -0.167 4.167 13 C 0.219 3.781 14 O -0.386 6.386 15 C -0.579 4.579 16 H 0.080 0.920 17 C -0.130 4.130 18 N -0.532 5.532 19 Si 0.727 3.273 20 H -0.206 1.206 21 H -0.210 1.210 22 H -0.197 1.197 23 C -0.063 4.063 24 N -0.171 5.171 25 H 0.101 0.899 26 H 0.084 0.916 27 H 0.074 0.926 28 H 0.223 0.777 29 H 0.155 0.845 30 H 0.150 0.850 31 H 0.155 0.845 32 H 0.054 0.946 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.228 0.772 37 H 0.078 0.922 38 H 0.095 0.905 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.005 -0.152 -15.267 15.561 hybrid contribution 1.172 -2.543 1.618 3.234 sum 4.177 -2.695 -13.649 14.526 Atomic orbital electron populations 1.22375 0.94454 1.02769 1.03589 1.20562 0.93816 0.95757 0.80019 0.86490 1.86604 1.77376 1.29423 1.42783 1.21852 0.94516 0.94142 0.93621 1.21790 1.00454 0.98361 0.99846 1.21447 0.97423 0.98307 0.91974 1.22754 1.00641 0.99835 0.99377 1.20067 0.90092 0.89335 0.91342 1.61678 1.24656 1.34758 0.99154 1.23041 0.90173 1.00092 0.94731 1.22973 1.00685 1.01562 0.91510 1.19287 0.83445 0.86953 0.88374 1.86156 1.52556 1.61088 1.38794 1.21561 1.50788 0.93939 0.91577 0.92041 1.24984 0.93610 0.96098 0.98299 1.69727 1.48822 1.19834 1.14779 0.86472 0.78322 0.82300 0.80190 1.20560 1.20982 1.19746 1.23355 0.98334 0.90264 0.94305 1.67029 1.23601 1.29369 0.97110 0.89894 0.91593 0.92569 0.77652 0.84541 0.85000 0.84538 0.94648 0.91219 0.91632 0.90960 0.77206 0.92248 0.90504 0.92943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.85 9.39 37.16 0.35 -1.51 16 2 C 0.16 1.80 4.07 -27.88 -0.11 1.68 16 3 H 0.12 1.34 8.14 -51.93 -0.42 0.91 16 4 O -0.56 -5.49 12.21 -35.23 -0.43 -5.92 16 5 C 0.10 1.37 6.16 -82.61 -0.51 0.86 16 6 C -0.18 -2.23 9.23 -39.42 -0.36 -2.60 16 7 C -0.07 -0.82 10.17 -39.32 -0.40 -1.22 16 8 C -0.20 -3.17 7.89 -39.22 -0.31 -3.48 16 9 C 0.32 5.91 5.85 -155.00 -0.91 5.00 16 10 N -0.48 -9.93 5.36 -169.24 -0.91 -10.84 16 11 C 0.05 0.91 6.50 -2.76 -0.02 0.90 16 12 C -0.13 -2.90 5.26 -25.38 -0.13 -3.03 16 13 C 0.26 6.37 0.95 -89.91 -0.09 6.29 16 14 O -0.58 -15.19 13.10 -35.23 -0.46 -15.65 16 15 C -0.54 -14.10 8.14 -34.44 -0.28 -14.38 16 16 H 0.06 1.59 7.78 -52.48 -0.41 1.18 16 17 C 0.07 1.88 5.28 -17.82 -0.09 1.79 16 18 N -0.89 -23.30 11.00 55.43 0.61 -22.69 16 19 Si 0.90 20.15 29.54 -169.99 -5.02 15.13 16 20 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 21 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 22 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 23 C 0.06 1.39 5.54 -1.89 -0.01 1.38 16 24 N -0.46 -8.04 9.91 -8.67 -0.09 -8.13 16 25 H 0.08 1.04 7.94 -51.93 -0.41 0.63 16 26 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.38 2.44 8.29 45.56 0.38 2.82 16 29 H 0.14 1.26 6.72 -52.49 -0.35 0.91 16 30 H 0.13 1.26 8.06 -52.49 -0.42 0.83 16 31 H 0.14 2.09 7.04 -52.48 -0.37 1.72 16 32 H 0.04 0.64 6.66 -51.93 -0.35 0.29 16 33 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 34 H 0.06 1.51 7.84 -51.92 -0.41 1.10 16 35 H 0.07 1.71 7.99 -51.93 -0.41 1.30 16 36 H 0.38 9.93 7.46 45.56 0.34 10.27 16 37 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 38 H 0.08 1.75 8.14 -51.93 -0.42 1.33 16 39 H 0.05 1.08 6.52 -51.93 -0.34 0.74 16 LS Contribution 318.19 15.07 4.80 4.80 Total: -1.00 -29.07 318.19 -8.38 -37.45 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: -4.00 Total: 14.18 kcal Atomic # 6 Polarization: -5.46 SS G_CDS: -2.88 Total: -8.33 kcal Atomic # 7 Polarization: -41.27 SS G_CDS: -0.38 Total: -41.65 kcal Atomic # 8 Polarization: -20.68 SS G_CDS: -0.89 Total: -21.57 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.07 -8.38 -37.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894350355.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.409 kcal (2) G-P(sol) polarization free energy of solvation -29.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds