Wall clock time and date at job start Tue Mar 31 2020 00:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47644 * 2 1 4 4 O 1.42903 * 109.47332 * 120.00137 * 2 1 3 5 5 C 1.50706 * 109.47163 * 240.00369 * 2 1 3 6 6 C 1.38064 * 119.57524 * 124.72589 * 5 2 1 7 7 C 1.38842 * 119.32488 * 179.74998 * 6 5 2 8 8 C 1.38334 * 118.50691 * 0.51783 * 7 6 5 9 9 C 1.39095 * 119.09945 * 359.72751 * 8 7 6 10 10 N 1.39012 * 119.70549 * 180.02562 * 9 8 7 11 11 C 1.47903 * 110.99728 * 59.89620 * 10 9 8 12 12 C 1.53996 * 107.05055 * 214.15530 * 11 10 9 13 13 C 1.54595 * 105.14417 * 1.22505 * 12 11 10 14 14 O 1.42894 * 110.72299 * 263.41976 * 13 12 11 15 15 C 1.50705 * 110.72399 * 140.31356 * 13 12 11 16 16 H 1.07992 * 120.00132 * 241.45469 * 15 13 12 17 17 C 1.37875 * 119.99844 * 61.45553 * 15 13 12 18 18 N 1.31517 * 119.99939 * 359.97438 * 17 15 13 19 19 Si 1.86793 * 120.00003 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47454 * 89.99926 * 19 17 15 21 21 H 1.48504 * 109.47185 * 210.00030 * 19 17 15 22 22 H 1.48500 * 109.47223 * 329.99651 * 19 17 15 23 23 C 1.48530 * 110.99956 * 302.49813 * 10 9 8 24 24 N 1.31945 * 119.56843 * 304.99993 * 5 2 1 25 25 H 1.08995 * 109.47070 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47069 * 299.99745 * 1 2 3 27 27 H 1.09001 * 109.47018 * 59.99757 * 1 2 3 28 28 H 0.96701 * 113.99620 * 60.00195 * 4 2 1 29 29 H 1.08003 * 120.33239 * 359.97438 * 6 5 2 30 30 H 1.08003 * 120.74081 * 180.22016 * 7 6 5 31 31 H 1.08004 * 120.44885 * 179.74746 * 8 7 6 32 32 H 1.09003 * 109.91875 * 333.50594 * 11 10 9 33 33 H 1.08996 * 109.91659 * 94.80579 * 11 10 9 34 34 H 1.09002 * 110.30812 * 120.14533 * 12 11 10 35 35 H 1.09005 * 110.30627 * 242.20658 * 12 11 10 36 36 H 0.96707 * 114.00287 * 298.54824 * 14 13 12 37 37 H 0.97005 * 119.99561 * 180.02562 * 18 17 15 38 38 H 1.09000 * 110.66233 * 278.15936 * 23 10 9 39 39 H 1.09002 * 110.66350 * 41.28264 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6737 1.1668 5 6 2.0324 -0.7104 -1.2306 6 6 2.9044 -0.0629 -2.0829 7 6 3.3680 -0.7241 -3.2123 8 6 2.9274 -2.0136 -3.4498 9 6 2.0443 -2.6030 -2.5513 10 7 1.5938 -3.8986 -2.7774 11 6 2.7231 -4.8528 -2.8181 12 6 2.3583 -5.9408 -3.8451 13 6 0.9764 -5.5254 -4.3998 14 8 -0.0713 -6.2157 -3.7159 15 6 0.8993 -5.7782 -5.8834 16 1 0.7385 -4.9552 -6.5638 17 6 1.0341 -7.0604 -6.3721 18 7 1.2305 -8.0627 -5.5435 19 14 0.9393 -7.3738 -8.2111 20 1 2.2982 -7.2721 -8.8014 21 1 0.3946 -8.7338 -8.4541 22 1 0.0497 -6.3647 -8.8400 23 6 0.9248 -4.0064 -4.0991 24 7 1.6288 -1.9411 -1.4822 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.7211 -1.5953 1.2328 29 1 3.2254 0.9464 -1.8712 30 1 4.0535 -0.2406 -3.8926 31 1 3.2648 -2.5556 -4.3210 32 1 3.6327 -4.3387 -3.1290 33 1 2.8649 -5.3024 -1.8353 34 1 3.0958 -5.9664 -4.6472 35 1 2.2954 -6.9142 -3.3587 36 1 -0.0362 -7.1775 -3.8110 37 1 1.3257 -8.9647 -5.8874 38 1 -0.1073 -3.6613 -4.0370 39 1 1.4742 -3.4456 -4.8553 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894350358.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:27:16 Heat of formation + Delta-G solvation = -50.431126 kcal Electronic energy + Delta-G solvation = -21980.721777 eV Core-core repulsion = 18695.490666 eV Total energy + Delta-G solvation = -3285.231110 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.61349 -38.46631 -36.95118 -34.80134 -32.47920 -32.16840 -31.74179 -29.88377 -28.24849 -28.10592 -24.87882 -24.38416 -22.72198 -21.60399 -20.34951 -19.60718 -17.65782 -17.07077 -16.41654 -16.09438 -15.70338 -15.01154 -14.95991 -14.73654 -14.32284 -13.89171 -13.82861 -13.33626 -13.02048 -12.61818 -12.41123 -12.18632 -12.04754 -11.90053 -11.63341 -11.35689 -11.24942 -11.04114 -10.78546 -10.57984 -10.48463 -10.42340 -9.98147 -9.76360 -9.44581 -9.29245 -8.70635 -8.61614 -8.16603 -7.89242 -6.26288 -4.35273 1.08355 1.34811 3.18283 3.26525 3.29849 3.72302 3.80737 4.26106 4.41089 4.50352 4.78303 4.96992 5.01524 5.09341 5.12709 5.21770 5.36431 5.51852 5.65875 5.72267 5.78737 5.82367 5.84153 6.03808 6.09582 6.17986 6.24247 6.31967 6.43839 6.63465 6.76719 6.92314 7.21919 7.40553 7.41919 7.53608 7.58370 7.75324 8.09573 8.30317 8.67192 9.34086 9.50807 10.80789 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.031701 B = 0.004256 C = 0.004083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.034701 B = 6577.048278 C = 6856.208840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.162 3.838 3 H 0.109 0.891 4 O -0.559 6.559 5 C 0.098 3.902 6 C -0.177 4.177 7 C -0.067 4.067 8 C -0.200 4.200 9 C 0.321 3.679 10 N -0.480 5.480 11 C 0.046 3.954 12 C -0.128 4.128 13 C 0.260 3.740 14 O -0.578 6.578 15 C -0.540 4.540 16 H 0.061 0.939 17 C 0.073 3.927 18 N -0.893 5.893 19 Si 0.900 3.100 20 H -0.280 1.280 21 H -0.284 1.284 22 H -0.273 1.273 23 C 0.063 3.937 24 N -0.461 5.461 25 H 0.074 0.926 26 H 0.065 0.935 27 H 0.063 0.937 28 H 0.385 0.615 29 H 0.132 0.868 30 H 0.133 0.867 31 H 0.137 0.863 32 H 0.035 0.965 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.072 0.928 36 H 0.379 0.621 37 H 0.268 0.732 38 H 0.077 0.923 39 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.885 12.960 6.026 14.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.102 3.898 3 H 0.127 0.873 4 O -0.365 6.365 5 C -0.042 4.042 6 C -0.197 4.197 7 C -0.093 4.093 8 C -0.223 4.223 9 C 0.091 3.909 10 N -0.202 5.202 11 C -0.080 4.080 12 C -0.167 4.167 13 C 0.220 3.780 14 O -0.386 6.386 15 C -0.579 4.579 16 H 0.080 0.920 17 C -0.130 4.130 18 N -0.532 5.532 19 Si 0.727 3.273 20 H -0.206 1.206 21 H -0.210 1.210 22 H -0.197 1.197 23 C -0.063 4.063 24 N -0.172 5.172 25 H 0.093 0.907 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.234 0.766 29 H 0.150 0.850 30 H 0.151 0.849 31 H 0.155 0.845 32 H 0.053 0.947 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.228 0.772 37 H 0.078 0.922 38 H 0.095 0.905 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.066 13.411 7.334 15.590 hybrid contribution 1.151 -0.726 -2.685 3.010 sum 4.217 12.686 4.649 14.153 Atomic orbital electron populations 1.22428 0.94994 1.04033 1.02230 1.20722 0.93737 0.94706 0.80599 0.87323 1.86502 1.77396 1.30201 1.42384 1.21886 0.94397 0.90960 0.96939 1.21855 1.00098 1.01433 0.96335 1.21455 0.97467 0.94049 0.96327 1.22756 1.00484 0.96961 1.02103 1.20071 0.90122 0.91620 0.89123 1.61684 1.24632 1.00418 1.33493 1.23043 0.90168 0.93867 1.00956 1.22976 1.00683 0.96881 0.96197 1.19284 0.83439 0.85502 0.89819 1.86155 1.52567 1.24036 1.75859 1.21560 1.50806 0.93757 0.91760 0.92041 1.24985 0.93599 0.95940 0.98465 1.69731 1.48803 0.99943 1.34682 0.86470 0.78325 0.77742 0.84741 1.20557 1.20977 1.19747 1.23353 0.98332 0.99228 0.85347 1.67038 1.23322 1.07412 1.19392 0.90733 0.91641 0.91813 0.76602 0.85012 0.84943 0.84504 0.94652 0.91206 0.91634 0.90960 0.77195 0.92246 0.90508 0.92946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.94 9.39 37.16 0.35 -1.59 16 2 C 0.16 1.86 3.91 -27.88 -0.11 1.75 16 3 H 0.11 1.00 7.86 -51.93 -0.41 0.59 16 4 O -0.56 -7.05 13.33 -35.23 -0.47 -7.52 16 5 C 0.10 1.36 5.77 -82.60 -0.48 0.88 16 6 C -0.18 -2.15 9.70 -39.42 -0.38 -2.53 16 7 C -0.07 -0.84 10.17 -39.32 -0.40 -1.24 16 8 C -0.20 -3.11 7.89 -39.23 -0.31 -3.42 16 9 C 0.32 5.81 5.85 -155.00 -0.91 4.90 16 10 N -0.48 -9.80 5.36 -169.24 -0.91 -10.71 16 11 C 0.05 0.91 6.50 -2.75 -0.02 0.89 16 12 C -0.13 -2.88 5.26 -25.37 -0.13 -3.02 16 13 C 0.26 6.35 0.95 -89.91 -0.09 6.26 16 14 O -0.58 -15.14 13.10 -35.23 -0.46 -15.60 16 15 C -0.54 -14.07 8.14 -34.44 -0.28 -14.35 16 16 H 0.06 1.59 7.78 -52.49 -0.41 1.18 16 17 C 0.07 1.88 5.28 -17.82 -0.09 1.78 16 18 N -0.89 -23.25 11.00 55.43 0.61 -22.64 16 19 Si 0.90 20.12 29.54 -169.99 -5.02 15.10 16 20 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 21 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 22 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 23 C 0.06 1.38 5.54 -1.90 -0.01 1.37 16 24 N -0.46 -7.86 9.89 -8.66 -0.09 -7.95 16 25 H 0.07 0.94 7.94 -51.93 -0.41 0.52 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.39 4.44 9.02 45.56 0.41 4.85 16 29 H 0.13 1.17 7.94 -52.48 -0.42 0.75 16 30 H 0.13 1.25 8.06 -52.48 -0.42 0.83 16 31 H 0.14 2.08 7.04 -52.48 -0.37 1.72 16 32 H 0.04 0.63 6.66 -51.93 -0.35 0.29 16 33 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 34 H 0.06 1.51 7.84 -51.93 -0.41 1.10 16 35 H 0.07 1.70 7.99 -51.93 -0.41 1.29 16 36 H 0.38 9.90 7.46 45.56 0.34 10.24 16 37 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 38 H 0.08 1.74 8.14 -51.93 -0.42 1.32 16 39 H 0.05 1.08 6.52 -51.93 -0.34 0.74 16 LS Contribution 320.87 15.07 4.84 4.84 Total: -1.00 -28.74 320.87 -8.38 -37.12 By element: Atomic # 1 Polarization: 19.67 SS G_CDS: -4.02 Total: 15.65 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: -2.86 Total: -8.30 kcal Atomic # 7 Polarization: -40.91 SS G_CDS: -0.38 Total: -41.29 kcal Atomic # 8 Polarization: -22.19 SS G_CDS: -0.93 Total: -23.12 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -28.74 -8.38 -37.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894350358.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.314 kcal (2) G-P(sol) polarization free energy of solvation -28.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds