Wall clock time and date at job start Tue Mar 31 2020 00:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47644 * 2 1 4 4 O 1.42903 * 109.47332 * 120.00137 * 2 1 3 5 5 C 1.50706 * 109.47163 * 240.00369 * 2 1 3 6 6 C 1.38064 * 119.57524 * 124.72589 * 5 2 1 7 7 C 1.38842 * 119.32488 * 179.74998 * 6 5 2 8 8 C 1.38334 * 118.50691 * 0.51783 * 7 6 5 9 9 C 1.39095 * 119.09945 * 359.72751 * 8 7 6 10 10 N 1.39012 * 119.70549 * 180.02562 * 9 8 7 11 11 C 1.47903 * 110.99728 * 59.89620 * 10 9 8 12 12 C 1.53996 * 107.05055 * 214.15530 * 11 10 9 13 13 C 1.54595 * 105.14417 * 1.22505 * 12 11 10 14 14 O 1.42894 * 110.72299 * 263.41976 * 13 12 11 15 15 C 1.50705 * 110.72399 * 140.31356 * 13 12 11 16 16 H 1.07992 * 120.00132 * 241.45469 * 15 13 12 17 17 C 1.37875 * 119.99844 * 61.45553 * 15 13 12 18 18 N 1.31517 * 119.99939 * 359.97438 * 17 15 13 19 19 Si 1.86793 * 120.00003 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47454 * 89.99926 * 19 17 15 21 21 H 1.48504 * 109.47185 * 210.00030 * 19 17 15 22 22 H 1.48500 * 109.47223 * 329.99651 * 19 17 15 23 23 C 1.48530 * 110.99956 * 302.49813 * 10 9 8 24 24 N 1.31945 * 119.56843 * 304.99993 * 5 2 1 25 25 H 1.08995 * 109.47070 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47069 * 299.99745 * 1 2 3 27 27 H 1.09001 * 109.47018 * 59.99757 * 1 2 3 28 28 H 0.96701 * 113.99620 * 60.00195 * 4 2 1 29 29 H 1.08003 * 120.33239 * 359.97438 * 6 5 2 30 30 H 1.08003 * 120.74081 * 180.22016 * 7 6 5 31 31 H 1.08004 * 120.44885 * 179.74746 * 8 7 6 32 32 H 1.09003 * 109.91875 * 333.50594 * 11 10 9 33 33 H 1.08996 * 109.91659 * 94.80579 * 11 10 9 34 34 H 1.09002 * 110.30812 * 120.14533 * 12 11 10 35 35 H 1.09005 * 110.30627 * 242.20658 * 12 11 10 36 36 H 0.96707 * 114.00287 * 298.54824 * 14 13 12 37 37 H 0.97005 * 119.99561 * 180.02562 * 18 17 15 38 38 H 1.09000 * 110.66233 * 278.15936 * 23 10 9 39 39 H 1.09002 * 110.66350 * 41.28264 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6737 1.1668 5 6 2.0324 -0.7104 -1.2306 6 6 2.9044 -0.0629 -2.0829 7 6 3.3680 -0.7241 -3.2123 8 6 2.9274 -2.0136 -3.4498 9 6 2.0443 -2.6030 -2.5513 10 7 1.5938 -3.8986 -2.7774 11 6 2.7231 -4.8528 -2.8181 12 6 2.3583 -5.9408 -3.8451 13 6 0.9764 -5.5254 -4.3998 14 8 -0.0713 -6.2157 -3.7159 15 6 0.8993 -5.7782 -5.8834 16 1 0.7385 -4.9552 -6.5638 17 6 1.0341 -7.0604 -6.3721 18 7 1.2305 -8.0627 -5.5435 19 14 0.9393 -7.3738 -8.2111 20 1 2.2982 -7.2721 -8.8014 21 1 0.3946 -8.7338 -8.4541 22 1 0.0497 -6.3647 -8.8400 23 6 0.9248 -4.0064 -4.0991 24 7 1.6288 -1.9411 -1.4822 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.7211 -1.5953 1.2328 29 1 3.2254 0.9464 -1.8712 30 1 4.0535 -0.2406 -3.8926 31 1 3.2648 -2.5556 -4.3210 32 1 3.6327 -4.3387 -3.1290 33 1 2.8649 -5.3024 -1.8353 34 1 3.0958 -5.9664 -4.6472 35 1 2.2954 -6.9142 -3.3587 36 1 -0.0362 -7.1775 -3.8110 37 1 1.3257 -8.9647 -5.8874 38 1 -0.1073 -3.6613 -4.0370 39 1 1.4742 -3.4456 -4.8553 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894350358.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:27:16 Heat of formation + Delta-G solvation = -73.110030 kcal Electronic energy + Delta-G solvation = -21981.705208 eV Core-core repulsion = 18695.490666 eV Total energy + Delta-G solvation = -3286.214541 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.82620 -39.94266 -38.07214 -36.50453 -34.18647 -33.54793 -33.00552 -31.15722 -29.95210 -29.49818 -26.71647 -25.38887 -24.10565 -22.61912 -21.82087 -21.44897 -19.25025 -18.44123 -17.70505 -17.19478 -17.11056 -16.85685 -16.28869 -15.97510 -15.59996 -15.39865 -15.19772 -14.56878 -14.47982 -14.14572 -13.79442 -13.61230 -13.31107 -13.22631 -13.11688 -12.89195 -12.80913 -12.56115 -12.45004 -12.25746 -12.04030 -11.84039 -11.45244 -11.18235 -10.83399 -10.65815 -10.59722 -10.13993 -9.82863 -9.37376 -8.22520 -6.39113 -0.03149 0.28900 1.40888 1.44016 1.53110 2.36251 2.53954 2.62342 3.02963 3.40288 3.59662 3.74487 3.80202 3.91983 4.04815 4.14250 4.18585 4.25515 4.29357 4.32314 4.41930 4.55419 4.60404 4.72671 4.82759 4.97493 4.98155 5.08577 5.15077 5.17388 5.33691 5.39340 5.52350 5.53318 5.63429 5.79490 6.12026 6.24073 6.62318 6.66407 7.11589 7.33045 7.45746 8.83285 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.031701 B = 0.004256 C = 0.004083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.034701 B = 6577.048278 C = 6856.208840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.162 3.838 3 H 0.141 0.859 4 O -0.569 6.569 5 C 0.085 3.915 6 C -0.163 4.163 7 C -0.059 4.059 8 C -0.209 4.209 9 C 0.284 3.716 10 N -0.492 5.492 11 C 0.056 3.944 12 C -0.116 4.116 13 C 0.244 3.756 14 O -0.591 6.591 15 C -0.564 4.564 16 H 0.057 0.943 17 C 0.034 3.966 18 N -0.910 5.910 19 Si 0.960 3.040 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.273 1.273 23 C 0.075 3.925 24 N -0.486 5.486 25 H 0.048 0.952 26 H 0.081 0.919 27 H 0.067 0.933 28 H 0.386 0.614 29 H 0.175 0.825 30 H 0.171 0.829 31 H 0.134 0.866 32 H 0.054 0.946 33 H 0.072 0.928 34 H 0.055 0.945 35 H 0.053 0.947 36 H 0.374 0.626 37 H 0.270 0.730 38 H 0.059 0.941 39 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.175 15.470 5.764 17.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.103 3.897 3 H 0.158 0.842 4 O -0.375 6.375 5 C -0.055 4.055 6 C -0.182 4.182 7 C -0.085 4.085 8 C -0.232 4.232 9 C 0.055 3.945 10 N -0.215 5.215 11 C -0.071 4.071 12 C -0.155 4.155 13 C 0.204 3.796 14 O -0.399 6.399 15 C -0.602 4.602 16 H 0.075 0.925 17 C -0.168 4.168 18 N -0.549 5.549 19 Si 0.786 3.214 20 H -0.197 1.197 21 H -0.207 1.207 22 H -0.198 1.198 23 C -0.051 4.051 24 N -0.198 5.198 25 H 0.067 0.933 26 H 0.100 0.900 27 H 0.086 0.914 28 H 0.235 0.765 29 H 0.192 0.808 30 H 0.188 0.812 31 H 0.152 0.848 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.222 0.778 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.362 15.931 7.081 17.972 hybrid contribution 0.746 -1.407 -2.535 2.994 sum 5.108 14.525 4.546 16.054 Atomic orbital electron populations 1.22376 0.94890 1.02677 1.03245 1.20987 0.93884 0.95595 0.79230 0.84168 1.86485 1.77620 1.30458 1.42923 1.22437 0.94720 0.90152 0.98172 1.22358 0.98022 1.02896 0.94966 1.21887 0.97085 0.92661 0.96849 1.22745 1.00440 0.98454 1.01572 1.19994 0.92506 0.91056 0.90952 1.61466 1.25201 1.02510 1.32323 1.22910 0.90887 0.93207 1.00067 1.22729 0.99446 0.96954 0.96367 1.19534 0.83788 0.86962 0.89342 1.86148 1.53717 1.23767 1.76256 1.21804 1.51598 0.94104 0.92680 0.92485 1.25667 0.93115 0.95658 1.02325 1.69820 1.48749 1.00154 1.36140 0.85525 0.78457 0.77398 0.80038 1.19745 1.20733 1.19776 1.23114 0.97836 0.97364 0.86810 1.66939 1.24202 1.09072 1.19544 0.93266 0.89982 0.91386 0.76478 0.80779 0.81155 0.84805 0.92746 0.90983 0.92599 0.92818 0.77765 0.92085 0.92252 0.92007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.48 9.39 71.98 0.68 -2.81 16 2 C 0.16 3.30 3.91 29.85 0.12 3.41 16 3 H 0.14 1.95 7.86 -2.39 -0.02 1.93 16 4 O -0.57 -13.33 13.33 -148.98 -1.99 -15.31 16 5 C 0.08 2.16 5.77 42.50 0.25 2.40 16 6 C -0.16 -3.27 9.70 22.37 0.22 -3.05 16 7 C -0.06 -1.26 10.17 22.44 0.23 -1.03 16 8 C -0.21 -6.17 7.89 22.50 0.18 -5.99 16 9 C 0.28 10.18 5.85 133.04 0.78 10.96 16 10 N -0.49 -20.46 5.36 -689.36 -3.70 -24.16 16 11 C 0.06 2.22 6.50 86.45 0.56 2.78 16 12 C -0.12 -5.36 5.26 31.47 0.17 -5.19 16 13 C 0.24 12.26 0.95 -10.34 -0.01 12.25 16 14 O -0.59 -32.17 13.10 -148.98 -1.95 -34.13 16 15 C -0.56 -29.92 8.14 25.60 0.21 -29.71 16 16 H 0.06 2.99 7.78 -2.91 -0.02 2.97 16 17 C 0.03 1.74 5.28 84.65 0.45 2.19 16 18 N -0.91 -48.15 11.00 21.45 0.24 -47.91 16 19 Si 0.96 41.32 29.54 68.60 2.03 43.35 16 20 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 21 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 22 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 23 C 0.08 3.37 5.54 86.65 0.48 3.85 16 24 N -0.49 -16.30 9.89 -181.33 -1.79 -18.09 16 25 H 0.05 1.23 7.94 -2.39 -0.02 1.21 16 26 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.07 1.28 8.14 -2.39 -0.02 1.27 16 28 H 0.39 8.72 9.02 -74.06 -0.67 8.05 16 29 H 0.17 2.01 7.94 -2.91 -0.02 1.98 16 30 H 0.17 2.34 8.06 -2.91 -0.02 2.31 16 31 H 0.13 3.93 7.04 -2.91 -0.02 3.91 16 32 H 0.05 1.93 6.66 -2.39 -0.02 1.92 16 33 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 34 H 0.06 2.63 7.84 -2.39 -0.02 2.61 16 35 H 0.05 2.62 7.99 -2.38 -0.02 2.61 16 36 H 0.37 20.43 7.46 -74.05 -0.55 19.87 16 37 H 0.27 13.59 8.31 -92.70 -0.77 12.82 16 38 H 0.06 2.80 8.14 -2.39 -0.02 2.78 16 39 H 0.06 2.59 6.52 -2.39 -0.02 2.57 16 Total: -1.00 -63.07 320.87 -3.02 -66.09 By element: Atomic # 1 Polarization: 40.25 SS G_CDS: -0.14 Total: 40.11 kcal Atomic # 6 Polarization: -14.23 SS G_CDS: 4.29 Total: -9.94 kcal Atomic # 7 Polarization: -84.91 SS G_CDS: -5.25 Total: -90.17 kcal Atomic # 8 Polarization: -45.50 SS G_CDS: -3.94 Total: -49.44 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 2.03 Total: 43.35 kcal Total: -63.07 -3.02 -66.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894350358.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.019 kcal (2) G-P(sol) polarization free energy of solvation -63.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds