Wall clock time and date at job start Tue Mar 31 2020 00:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35673 * 117.00562 * 2 1 4 4 C 1.38912 * 119.68828 * 180.02562 * 3 2 1 5 5 C 1.38376 * 119.11603 * 180.02562 * 4 3 2 6 6 C 1.38837 * 118.48289 * 359.97438 * 5 4 3 7 7 C 1.50697 * 120.35465 * 179.97438 * 6 5 4 8 8 C 1.52996 * 109.47305 * 90.00565 * 7 6 5 9 9 C 1.50697 * 109.47305 * 179.97438 * 8 7 6 10 10 O 1.21280 * 119.99998 * 359.97438 * 9 8 7 11 11 N 1.34775 * 119.99887 * 179.97438 * 9 8 7 12 12 C 1.46502 * 120.00053 * 180.02562 * 11 9 8 13 13 H 1.08996 * 109.47077 * 34.99783 * 12 11 9 14 14 C 1.53008 * 109.47016 * 275.00255 * 12 11 9 15 15 C 1.50695 * 109.47337 * 155.00261 * 12 11 9 16 16 H 1.07998 * 120.00418 * 5.62270 * 15 12 11 17 17 C 1.37879 * 120.00201 * 185.62926 * 15 12 11 18 18 N 1.31514 * 120.00393 * 197.18198 * 17 15 12 19 19 Si 1.86804 * 119.99786 * 17.45333 * 17 15 12 20 20 H 1.48502 * 109.47029 * 179.72709 * 19 17 15 21 21 H 1.48503 * 109.46948 * 299.72609 * 19 17 15 22 22 H 1.48492 * 109.47033 * 59.72641 * 19 17 15 23 23 C 1.38044 * 119.28965 * 0.25929 * 6 5 4 24 24 N 1.31972 * 120.83060 * 359.44565 * 23 6 5 25 25 H 1.09003 * 109.47230 * 59.99217 * 1 2 3 26 26 H 1.08999 * 109.47493 * 179.97438 * 1 2 3 27 27 H 1.09009 * 109.46967 * 300.00283 * 1 2 3 28 28 H 1.07999 * 120.44381 * 0.02562 * 4 3 2 29 29 H 1.08006 * 120.76376 * 180.02562 * 5 4 3 30 30 H 1.09005 * 109.47003 * 330.00171 * 7 6 5 31 31 H 1.09006 * 109.46800 * 210.00556 * 7 6 5 32 32 H 1.08996 * 109.47430 * 59.99616 * 8 7 6 33 33 H 1.09000 * 109.46771 * 299.99752 * 8 7 6 34 34 H 0.96996 * 120.00288 * 0.02562 * 11 9 8 35 35 H 1.09000 * 109.46665 * 306.33574 * 14 12 11 36 36 H 1.08994 * 109.46957 * 66.33318 * 14 12 11 37 37 H 1.09002 * 109.47065 * 186.34089 * 14 12 11 38 38 H 0.97001 * 119.99221 * 355.17115 * 18 17 15 39 39 H 1.08001 * 119.58464 * 179.72239 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 3.4326 1.2738 -0.0005 5 6 4.0486 2.5129 0.0000 6 6 3.2506 3.6490 0.0005 7 6 3.8770 5.0196 0.0017 8 6 4.0894 5.4846 -1.4403 9 6 4.7152 6.8555 -1.4391 10 8 4.9662 7.4066 -0.3883 11 7 4.9960 7.4691 -2.6058 12 6 5.6049 8.8015 -2.6047 13 1 6.2915 8.8865 -1.7624 14 6 4.5098 9.8626 -2.4789 15 6 6.3605 9.0096 -3.8918 16 1 6.3105 8.2663 -4.6737 17 6 7.1159 10.1490 -4.0713 18 7 7.4948 10.5033 -5.2798 19 14 7.6077 11.1855 -2.5970 20 1 8.4165 12.3440 -3.0540 21 1 6.3872 11.6752 -1.9071 22 1 8.4101 10.3612 -1.6580 23 6 1.8772 3.5097 0.0059 24 7 1.3187 2.3140 -0.0004 25 1 -0.3634 0.5140 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 4.0228 0.3694 -0.0014 29 1 5.1256 2.5945 -0.0008 30 1 4.8374 4.9798 0.5159 31 1 3.2184 5.7196 0.5159 32 1 3.1291 5.5244 -1.9544 33 1 4.7480 4.7846 -1.9545 34 1 4.7949 7.0285 -3.4462 35 1 3.7620 9.7069 -3.2566 36 1 4.0376 9.7831 -1.4998 37 1 4.9495 10.8537 -2.5910 38 1 7.3033 9.9272 -6.0364 39 1 1.2520 4.3902 0.0109 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000895982342.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:46:23 Heat of formation + Delta-G solvation = -55.153973 kcal Electronic energy + Delta-G solvation = -20579.297457 eV Core-core repulsion = 17293.861548 eV Total energy + Delta-G solvation = -3285.435908 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.87527 -39.16113 -38.22375 -35.13722 -34.08384 -32.48757 -32.36101 -30.35960 -29.10191 -27.48519 -25.02710 -24.58279 -23.64120 -21.91748 -20.55466 -19.53536 -18.64158 -17.78479 -17.35143 -16.52064 -16.23695 -15.36755 -15.12310 -15.01627 -14.70470 -14.43070 -13.99476 -13.61937 -13.34219 -13.07589 -12.93721 -12.73465 -12.31224 -12.18531 -12.10635 -11.86036 -11.55316 -11.41176 -11.30365 -11.02676 -10.48924 -10.08804 -10.04182 -9.82885 -9.80719 -9.24486 -9.08556 -8.56212 -8.33549 -8.18168 -6.59639 -4.23102 0.91941 1.04276 2.84424 3.24039 3.37807 3.43734 3.51029 3.58980 3.97999 4.10200 4.40749 4.65452 4.74279 4.78211 4.90922 5.02575 5.03959 5.12120 5.15984 5.19336 5.32639 5.44285 5.46975 5.71374 5.72937 5.83808 6.08510 6.22264 6.26192 6.38396 6.54769 6.67242 6.95740 6.97551 7.28711 7.39263 7.61337 7.65390 8.21989 8.47439 8.69500 8.97514 9.46027 10.81041 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.043456 B = 0.002798 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.173939 B =10005.226664 C =10077.823381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.311 6.311 3 C 0.309 3.691 4 C -0.187 4.187 5 C -0.038 4.038 6 C -0.164 4.164 7 C -0.055 4.055 8 C -0.137 4.137 9 C 0.500 3.500 10 O -0.559 6.559 11 N -0.704 5.704 12 C 0.240 3.760 13 H 0.040 0.960 14 C -0.160 4.160 15 C -0.618 4.618 16 H 0.061 0.939 17 C 0.038 3.962 18 N -0.898 5.898 19 Si 1.043 2.957 20 H -0.283 1.283 21 H -0.271 1.271 22 H -0.280 1.280 23 C 0.141 3.859 24 N -0.539 5.539 25 H 0.058 0.942 26 H 0.094 0.906 27 H 0.058 0.942 28 H 0.140 0.860 29 H 0.143 0.857 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.393 0.607 35 H 0.043 0.957 36 H 0.029 0.971 37 H 0.062 0.938 38 H 0.268 0.732 39 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.576 -18.260 9.663 23.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.218 6.218 3 C 0.130 3.870 4 C -0.208 4.208 5 C -0.063 4.063 6 C -0.166 4.166 7 C -0.093 4.093 8 C -0.177 4.177 9 C 0.285 3.715 10 O -0.439 6.439 11 N -0.351 5.351 12 C 0.137 3.863 13 H 0.058 0.942 14 C -0.219 4.219 15 C -0.656 4.656 16 H 0.079 0.921 17 C -0.169 4.169 18 N -0.531 5.531 19 Si 0.871 3.129 20 H -0.209 1.209 21 H -0.198 1.198 22 H -0.206 1.206 23 C -0.014 4.014 24 N -0.262 5.262 25 H 0.077 0.923 26 H 0.113 0.887 27 H 0.076 0.924 28 H 0.158 0.842 29 H 0.161 0.839 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.226 0.774 35 H 0.062 0.938 36 H 0.048 0.952 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -11.418 -16.796 10.804 23.004 hybrid contribution -0.283 -1.571 -1.074 1.924 sum -11.701 -18.367 9.731 23.853 Atomic orbital electron populations 1.22838 0.77316 1.02800 1.02481 1.86222 1.22864 1.24726 1.88036 1.19847 0.89463 0.84693 0.92960 1.21064 0.91973 0.99568 1.08185 1.21404 1.00767 0.90689 0.93455 1.20853 0.94719 0.96722 1.04337 1.20185 1.01994 0.91039 0.96098 1.21675 1.02292 0.95394 0.98332 1.20529 0.79099 0.87260 0.84570 1.90645 1.54467 1.67367 1.31380 1.46313 1.61419 1.20198 1.07197 1.18993 0.91069 0.77738 0.98506 0.94186 1.22497 0.99924 1.00849 0.98595 1.22083 1.33200 1.09289 1.00995 0.92114 1.25706 0.93410 0.96315 1.01450 1.70884 1.47155 1.36265 0.98811 0.84060 0.77360 0.76547 0.74936 1.20915 1.19754 1.20628 1.22358 0.92377 0.93522 0.93149 1.67319 1.40926 0.98810 1.19133 0.92313 0.88747 0.92353 0.84178 0.83917 0.89910 0.89886 0.89342 0.89297 0.77421 0.93789 0.95186 0.91964 0.92137 0.82293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.38 101.05 1.05 1.37 16 2 O -0.31 -3.31 10.48 -18.72 -0.20 -3.51 16 3 C 0.31 3.52 7.49 -17.12 -0.13 3.39 16 4 C -0.19 -1.85 10.04 -39.28 -0.39 -2.25 16 5 C -0.04 -0.36 9.85 -39.31 -0.39 -0.75 16 6 C -0.16 -1.69 5.15 -104.47 -0.54 -2.23 16 7 C -0.05 -0.63 4.66 -27.89 -0.13 -0.76 16 8 C -0.14 -1.70 5.68 -27.89 -0.16 -1.86 16 9 C 0.50 9.01 7.79 -10.99 -0.09 8.92 16 10 O -0.56 -12.05 15.65 5.56 0.09 -11.96 16 11 N -0.70 -13.88 5.07 -54.93 -0.28 -14.15 16 12 C 0.24 5.74 2.14 -69.08 -0.15 5.59 16 13 H 0.04 1.04 6.23 -51.93 -0.32 0.72 16 14 C -0.16 -3.61 9.16 37.16 0.34 -3.27 16 15 C -0.62 -16.65 9.00 -34.44 -0.31 -16.96 16 16 H 0.06 1.71 7.96 -52.49 -0.42 1.29 16 17 C 0.04 1.06 5.29 -17.82 -0.09 0.96 16 18 N -0.90 -26.67 13.70 55.43 0.76 -25.91 16 19 Si 1.04 25.04 26.29 -169.99 -4.47 20.57 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.27 -6.10 5.76 56.52 0.33 -5.78 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 23 C 0.14 1.49 10.85 -17.56 -0.19 1.30 16 24 N -0.54 -6.29 9.22 -13.33 -0.12 -6.41 16 25 H 0.06 0.46 8.10 -51.93 -0.42 0.04 16 26 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.45 8.10 -51.92 -0.42 0.03 16 28 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 29 H 0.14 1.09 8.06 -52.48 -0.42 0.66 16 30 H 0.08 1.00 8.05 -51.93 -0.42 0.58 16 31 H 0.08 0.98 8.05 -51.93 -0.42 0.56 16 32 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.39 6.87 8.53 -40.82 -0.35 6.52 16 35 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 36 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.06 1.44 4.88 -51.93 -0.25 1.19 16 38 H 0.27 7.89 8.73 -40.82 -0.36 7.53 16 39 H 0.16 1.38 8.06 -52.49 -0.42 0.96 16 LS Contribution 331.37 15.07 4.99 4.99 Total: -1.00 -32.53 331.37 -6.03 -38.57 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -5.63 Total: 4.35 kcal Atomic # 6 Polarization: -5.35 SS G_CDS: -1.18 Total: -6.53 kcal Atomic # 7 Polarization: -46.84 SS G_CDS: 0.36 Total: -46.48 kcal Atomic # 8 Polarization: -15.36 SS G_CDS: -0.11 Total: -15.47 kcal Atomic # 14 Polarization: 25.04 SS G_CDS: -4.47 Total: 20.57 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.53 -6.03 -38.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895982342.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.587 kcal (2) G-P(sol) polarization free energy of solvation -32.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds