Wall clock time and date at job start Tue Mar 31 2020 00:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35673 * 117.00562 * 2 1 4 4 C 1.38912 * 119.68828 * 180.02562 * 3 2 1 5 5 C 1.38376 * 119.11603 * 180.02562 * 4 3 2 6 6 C 1.38837 * 118.48289 * 359.97438 * 5 4 3 7 7 C 1.50697 * 120.35465 * 179.97438 * 6 5 4 8 8 C 1.52996 * 109.47305 * 90.00565 * 7 6 5 9 9 C 1.50697 * 109.47305 * 179.97438 * 8 7 6 10 10 O 1.21280 * 119.99998 * 359.97438 * 9 8 7 11 11 N 1.34775 * 119.99887 * 179.97438 * 9 8 7 12 12 C 1.46502 * 120.00053 * 180.02562 * 11 9 8 13 13 H 1.08996 * 109.47077 * 34.99783 * 12 11 9 14 14 C 1.53008 * 109.47016 * 275.00255 * 12 11 9 15 15 C 1.50695 * 109.47337 * 155.00261 * 12 11 9 16 16 H 1.07998 * 120.00418 * 5.62270 * 15 12 11 17 17 C 1.37879 * 120.00201 * 185.62926 * 15 12 11 18 18 N 1.31514 * 120.00393 * 197.18198 * 17 15 12 19 19 Si 1.86804 * 119.99786 * 17.45333 * 17 15 12 20 20 H 1.48502 * 109.47029 * 179.72709 * 19 17 15 21 21 H 1.48503 * 109.46948 * 299.72609 * 19 17 15 22 22 H 1.48492 * 109.47033 * 59.72641 * 19 17 15 23 23 C 1.38044 * 119.28965 * 0.25929 * 6 5 4 24 24 N 1.31972 * 120.83060 * 359.44565 * 23 6 5 25 25 H 1.09003 * 109.47230 * 59.99217 * 1 2 3 26 26 H 1.08999 * 109.47493 * 179.97438 * 1 2 3 27 27 H 1.09009 * 109.46967 * 300.00283 * 1 2 3 28 28 H 1.07999 * 120.44381 * 0.02562 * 4 3 2 29 29 H 1.08006 * 120.76376 * 180.02562 * 5 4 3 30 30 H 1.09005 * 109.47003 * 330.00171 * 7 6 5 31 31 H 1.09006 * 109.46800 * 210.00556 * 7 6 5 32 32 H 1.08996 * 109.47430 * 59.99616 * 8 7 6 33 33 H 1.09000 * 109.46771 * 299.99752 * 8 7 6 34 34 H 0.96996 * 120.00288 * 0.02562 * 11 9 8 35 35 H 1.09000 * 109.46665 * 306.33574 * 14 12 11 36 36 H 1.08994 * 109.46957 * 66.33318 * 14 12 11 37 37 H 1.09002 * 109.47065 * 186.34089 * 14 12 11 38 38 H 0.97001 * 119.99221 * 355.17115 * 18 17 15 39 39 H 1.08001 * 119.58464 * 179.72239 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 3.4326 1.2738 -0.0005 5 6 4.0486 2.5129 0.0000 6 6 3.2506 3.6490 0.0005 7 6 3.8770 5.0196 0.0017 8 6 4.0894 5.4846 -1.4403 9 6 4.7152 6.8555 -1.4391 10 8 4.9662 7.4066 -0.3883 11 7 4.9960 7.4691 -2.6058 12 6 5.6049 8.8015 -2.6047 13 1 6.2915 8.8865 -1.7624 14 6 4.5098 9.8626 -2.4789 15 6 6.3605 9.0096 -3.8918 16 1 6.3105 8.2663 -4.6737 17 6 7.1159 10.1490 -4.0713 18 7 7.4948 10.5033 -5.2798 19 14 7.6077 11.1855 -2.5970 20 1 8.4165 12.3440 -3.0540 21 1 6.3872 11.6752 -1.9071 22 1 8.4101 10.3612 -1.6580 23 6 1.8772 3.5097 0.0059 24 7 1.3187 2.3140 -0.0004 25 1 -0.3634 0.5140 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 4.0228 0.3694 -0.0014 29 1 5.1256 2.5945 -0.0008 30 1 4.8374 4.9798 0.5159 31 1 3.2184 5.7196 0.5159 32 1 3.1291 5.5244 -1.9544 33 1 4.7480 4.7846 -1.9545 34 1 4.7949 7.0285 -3.4462 35 1 3.7620 9.7069 -3.2566 36 1 4.0376 9.7831 -1.4998 37 1 4.9495 10.8537 -2.5910 38 1 7.3033 9.9272 -6.0364 39 1 1.2520 4.3902 0.0109 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000895982342.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:46:22 Heat of formation + Delta-G solvation = -79.013272 kcal Electronic energy + Delta-G solvation = -20580.332074 eV Core-core repulsion = 17293.861548 eV Total energy + Delta-G solvation = -3286.470525 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.65164 -40.61076 -39.02354 -36.87255 -35.09913 -34.43206 -33.18918 -31.83000 -30.28581 -28.19560 -26.88876 -25.74717 -24.39279 -23.06514 -22.01138 -21.13299 -19.72589 -19.37307 -18.12150 -17.96069 -17.03871 -16.93714 -16.36200 -15.96786 -15.60806 -15.43813 -15.24284 -14.89172 -14.57946 -14.43503 -14.36420 -14.01319 -13.92497 -13.53746 -13.25742 -13.12847 -12.87783 -12.51477 -12.40930 -12.04974 -11.99081 -11.93496 -11.66756 -11.15497 -10.88699 -10.71422 -10.59719 -10.46581 -9.86496 -9.36429 -8.79791 -6.44379 0.14820 0.27882 1.46338 1.51369 1.70718 1.82269 2.15866 2.42017 2.51843 2.78820 3.01388 3.35995 3.73675 3.95231 4.00359 4.06999 4.22858 4.33908 4.38120 4.42628 4.46712 4.53313 4.68889 4.72368 4.75718 4.77006 4.81926 4.95717 5.01082 5.12082 5.21565 5.40431 5.46342 5.49970 5.66984 5.68661 6.00979 6.23529 6.53193 6.83603 6.89363 7.29485 7.49137 8.59628 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.043456 B = 0.002798 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.173939 B =10005.226664 C =10077.823381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.323 6.323 3 C 0.292 3.708 4 C -0.191 4.191 5 C -0.036 4.036 6 C -0.164 4.164 7 C -0.046 4.046 8 C -0.123 4.123 9 C 0.499 3.501 10 O -0.594 6.594 11 N -0.708 5.708 12 C 0.242 3.758 13 H 0.022 0.978 14 C -0.153 4.153 15 C -0.613 4.613 16 H 0.040 0.960 17 C -0.008 4.008 18 N -0.928 5.928 19 Si 1.075 2.925 20 H -0.283 1.283 21 H -0.247 1.247 22 H -0.273 1.273 23 C 0.134 3.866 24 N -0.555 5.555 25 H 0.054 0.946 26 H 0.121 0.879 27 H 0.055 0.945 28 H 0.158 0.842 29 H 0.163 0.837 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.111 0.889 33 H 0.109 0.891 34 H 0.404 0.596 35 H 0.051 0.949 36 H 0.040 0.960 37 H 0.054 0.946 38 H 0.258 0.742 39 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.363 -19.352 10.711 25.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.230 6.230 3 C 0.114 3.886 4 C -0.211 4.211 5 C -0.061 4.061 6 C -0.167 4.167 7 C -0.084 4.084 8 C -0.163 4.163 9 C 0.287 3.713 10 O -0.476 6.476 11 N -0.356 5.356 12 C 0.137 3.863 13 H 0.040 0.960 14 C -0.212 4.212 15 C -0.651 4.651 16 H 0.058 0.942 17 C -0.208 4.208 18 N -0.563 5.563 19 Si 0.897 3.103 20 H -0.209 1.209 21 H -0.172 1.172 22 H -0.199 1.199 23 C -0.021 4.021 24 N -0.279 5.279 25 H 0.073 0.927 26 H 0.139 0.861 27 H 0.073 0.927 28 H 0.175 0.825 29 H 0.181 0.819 30 H 0.094 0.906 31 H 0.096 0.904 32 H 0.130 0.870 33 H 0.127 0.873 34 H 0.238 0.762 35 H 0.070 0.930 36 H 0.059 0.941 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -12.237 -17.928 11.845 24.728 hybrid contribution -0.076 -1.342 -1.412 1.949 sum -12.313 -19.270 10.433 25.136 Atomic orbital electron populations 1.23017 0.76076 1.04508 1.02091 1.86209 1.24191 1.24607 1.87996 1.20181 0.90242 0.84877 0.93314 1.21316 0.91657 1.00480 1.07660 1.21667 1.01781 0.90243 0.92421 1.20721 0.94670 0.96270 1.05022 1.20055 1.01642 0.91537 0.95205 1.21659 1.03204 0.91789 0.99627 1.21421 0.77994 0.88729 0.83149 1.90629 1.55791 1.68690 1.32495 1.46194 1.61676 1.19119 1.08649 1.18699 0.91292 0.80458 0.95833 0.95991 1.22374 0.99508 0.99807 0.99478 1.22271 1.32849 1.08348 1.01661 0.94203 1.26862 0.93333 0.97984 1.02643 1.70988 1.49148 1.36866 0.99340 0.83659 0.78230 0.75634 0.72775 1.20864 1.17179 1.19860 1.22635 0.92835 0.93734 0.92885 1.67330 1.41481 0.99235 1.19838 0.92726 0.86057 0.92673 0.82464 0.81935 0.90583 0.90392 0.87035 0.87308 0.76160 0.93012 0.94112 0.92758 0.93312 0.80892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.54 10.38 113.37 1.18 1.72 16 2 O -0.32 -6.46 10.48 -89.90 -0.94 -7.40 16 3 C 0.29 6.23 7.49 84.79 0.63 6.87 16 4 C -0.19 -3.38 10.04 22.46 0.23 -3.15 16 5 C -0.04 -0.59 9.85 22.45 0.22 -0.37 16 6 C -0.16 -3.01 5.15 -19.77 -0.10 -3.11 16 7 C -0.05 -0.94 4.66 29.85 0.14 -0.80 16 8 C -0.12 -2.70 5.68 29.85 0.17 -2.53 16 9 C 0.50 17.01 7.79 87.66 0.68 17.69 16 10 O -0.59 -24.78 15.65 -3.03 -0.05 -24.83 16 11 N -0.71 -26.83 5.07 -446.10 -2.26 -29.09 16 12 C 0.24 11.32 2.14 44.25 0.09 11.41 16 13 H 0.02 1.13 6.23 -2.39 -0.01 1.11 16 14 C -0.15 -6.65 9.16 71.98 0.66 -5.99 16 15 C -0.61 -33.04 9.00 25.60 0.23 -32.81 16 16 H 0.04 2.26 7.96 -2.91 -0.02 2.24 16 17 C -0.01 -0.43 5.29 84.66 0.45 0.02 16 18 N -0.93 -55.84 13.70 21.45 0.29 -55.54 16 19 Si 1.07 49.89 26.29 68.60 1.80 51.69 16 20 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 21 H -0.25 -10.45 5.76 99.48 0.57 -9.88 16 22 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 23 C 0.13 2.58 10.85 84.63 0.92 3.50 16 24 N -0.56 -12.20 9.22 -308.95 -2.85 -15.05 16 25 H 0.05 0.81 8.10 -2.39 -0.02 0.79 16 26 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.05 0.81 8.10 -2.38 -0.02 0.79 16 28 H 0.16 2.14 8.06 -2.91 -0.02 2.11 16 29 H 0.16 1.97 8.06 -2.91 -0.02 1.95 16 30 H 0.08 1.68 8.05 -2.38 -0.02 1.66 16 31 H 0.08 1.69 8.05 -2.38 -0.02 1.67 16 32 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.40 13.48 8.53 -92.71 -0.79 12.69 16 35 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 36 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.05 2.41 4.88 -2.39 -0.01 2.40 16 38 H 0.26 15.51 8.73 -92.71 -0.81 14.70 16 39 H 0.17 2.66 8.06 -2.91 -0.02 2.64 16 Total: -1.00 -69.67 331.37 1.59 -68.08 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: 0.09 Total: 19.70 kcal Atomic # 6 Polarization: -13.06 SS G_CDS: 5.50 Total: -7.56 kcal Atomic # 7 Polarization: -94.87 SS G_CDS: -4.82 Total: -99.68 kcal Atomic # 8 Polarization: -31.24 SS G_CDS: -0.99 Total: -32.23 kcal Atomic # 14 Polarization: 49.89 SS G_CDS: 1.80 Total: 51.69 kcal Total: -69.67 1.59 -68.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895982342.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.935 kcal (2) G-P(sol) polarization free energy of solvation -69.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds