Wall clock time and date at job start Tue Mar 31 2020 00:50:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 109.47115 * 2 1 4 4 O 1.42897 * 109.47507 * 239.99823 * 2 1 3 5 5 C 1.53002 * 109.46820 * 119.99271 * 2 1 3 6 6 N 1.46905 * 109.46898 * 185.00143 * 5 2 1 7 7 C 1.46895 * 110.99668 * 188.95797 * 6 5 2 8 8 N 1.36599 * 110.99698 * 65.00283 * 6 5 2 9 9 C 1.34775 * 119.99648 * 239.99594 * 8 6 5 10 10 O 1.21583 * 120.00295 * 0.02562 * 9 8 6 11 11 C 1.47640 * 119.99455 * 180.02562 * 9 8 6 12 12 C 1.40015 * 119.90083 * 359.73092 * 11 9 8 13 13 C 1.36321 * 120.10638 * 179.72011 * 12 11 9 14 14 C 1.40877 * 119.89112 * 0.57132 * 13 12 11 15 15 C 1.41114 * 120.10277 * 179.67836 * 14 13 12 16 16 H 1.08005 * 120.00317 * 204.65461 * 15 14 13 17 17 C 1.40222 * 119.99846 * 24.65103 * 15 14 13 18 18 N 1.30645 * 120.00179 * 17.86816 * 17 15 14 19 19 Si 1.86806 * 119.99979 * 197.86803 * 17 15 14 20 20 H 1.48496 * 109.47056 * 90.00298 * 19 17 15 21 21 H 1.48501 * 109.47144 * 210.00006 * 19 17 15 22 22 H 1.48497 * 109.47083 * 329.99668 * 19 17 15 23 23 C 1.40888 * 119.79694 * 359.69992 * 14 13 12 24 24 C 1.36314 * 119.88897 * 0.02562 * 23 14 13 25 25 H 1.09000 * 109.47607 * 300.00829 * 1 2 3 26 26 H 1.09010 * 109.46939 * 60.00208 * 1 2 3 27 27 H 1.08998 * 109.47256 * 180.02562 * 1 2 3 28 28 H 0.96697 * 114.00004 * 59.99536 * 4 2 1 29 29 H 1.09005 * 109.46510 * 65.00638 * 5 2 1 30 30 H 1.09001 * 109.47507 * 305.00214 * 5 2 1 31 31 H 1.09003 * 109.47532 * 60.00330 * 7 6 5 32 32 H 1.09001 * 109.47109 * 299.99976 * 7 6 5 33 33 H 1.09000 * 109.47028 * 179.97438 * 7 6 5 34 34 H 0.96996 * 119.99762 * 60.00163 * 8 6 5 35 35 H 1.07998 * 119.93940 * 359.97438 * 12 11 9 36 36 H 1.07998 * 120.04933 * 180.24731 * 13 12 11 37 37 H 0.96996 * 120.00308 * 180.02562 * 18 17 15 38 38 H 1.08009 * 120.05322 * 179.97438 * 23 14 13 39 39 H 1.08002 * 119.94534 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 -1.1667 5 6 2.0399 -0.7211 1.2494 6 7 3.5040 -0.6174 1.3113 7 6 4.0477 -1.4724 2.3748 8 7 3.8962 0.6804 1.4779 9 6 4.6824 1.2704 0.5558 10 8 5.0422 0.6476 -0.4245 11 6 5.1067 2.6730 0.7362 12 6 4.6864 3.3899 1.8630 13 6 5.0804 4.6833 2.0366 14 6 5.9018 5.3023 1.0740 15 6 6.3066 6.6432 1.2458 16 1 6.5761 7.2402 0.3871 17 6 6.3589 7.2004 2.5315 18 7 6.3796 6.4220 3.5805 19 14 6.3991 9.0559 2.7443 20 1 5.0107 9.5725 2.8469 21 1 7.1464 9.3962 3.9816 22 1 7.0721 9.6739 1.5738 23 6 6.3175 4.5787 -0.0612 24 6 5.9230 3.2840 -0.2233 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3634 -1.0276 0.0005 28 1 1.7211 -0.2702 -1.9979 29 1 1.7516 -1.7714 1.2057 30 1 1.6053 -0.2615 2.1371 31 1 3.7789 -2.5106 2.1797 32 1 3.6346 -1.1645 3.3354 33 1 5.1333 -1.3770 2.3984 34 1 3.6088 1.1773 2.2598 35 1 4.0525 2.9160 2.5978 36 1 4.7589 5.2342 2.9082 37 1 6.4154 6.8075 4.4699 38 1 6.9469 5.0493 -0.8020 39 1 6.2415 2.7283 -1.0929 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000910153564.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:50:52 Heat of formation + Delta-G solvation = -37.427331 kcal Electronic energy + Delta-G solvation = -21489.577774 eV Core-core repulsion = 18204.910550 eV Total energy + Delta-G solvation = -3284.667223 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.54309 -37.86980 -36.91987 -35.90534 -33.86005 -31.94695 -31.03129 -29.73989 -29.42698 -27.17755 -26.01524 -23.68924 -21.81967 -21.19059 -20.75059 -19.65756 -17.55260 -17.31731 -17.22201 -16.16882 -15.66691 -15.45718 -14.50556 -14.14498 -13.97113 -13.84719 -13.38235 -13.19314 -13.04641 -12.81005 -12.55404 -12.30670 -12.24801 -12.11596 -11.92613 -11.79705 -11.35378 -11.29842 -10.95894 -10.69976 -10.64465 -10.02998 -9.80871 -9.57447 -9.37024 -8.87834 -8.68654 -8.47835 -7.73479 -7.55310 -7.04383 -4.61167 2.25581 2.91524 2.95031 2.97290 3.02451 3.19970 3.73257 3.93735 4.30037 4.50453 4.59216 4.93293 5.18861 5.22036 5.32882 5.40861 5.48348 5.52059 5.57114 5.82706 5.84452 5.90614 5.99530 6.02610 6.08843 6.32386 6.76304 6.82042 6.88687 7.01270 7.12081 7.42434 7.62790 7.76986 7.85014 7.85919 7.91024 8.06878 8.26292 8.38990 8.62529 8.74401 9.38183 9.87754 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.026394 B = 0.003835 C = 0.003821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.578287 B = 7299.787562 C = 7327.056380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.108 3.892 3 H 0.058 0.942 4 O -0.546 6.546 5 C 0.045 3.955 6 N -0.287 5.287 7 C 0.008 3.992 8 N -0.594 5.594 9 C 0.586 3.414 10 O -0.540 6.540 11 C -0.279 4.279 12 C -0.065 4.065 13 C -0.178 4.178 14 C 0.128 3.872 15 C -0.444 4.444 16 H 0.085 0.915 17 C 0.075 3.925 18 N -0.773 5.773 19 Si 0.913 3.087 20 H -0.265 1.265 21 H -0.275 1.275 22 H -0.259 1.259 23 C -0.238 4.238 24 C -0.021 4.021 25 H 0.063 0.937 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.370 0.630 29 H 0.089 0.911 30 H 0.050 0.950 31 H 0.078 0.922 32 H 0.028 0.972 33 H 0.075 0.925 34 H 0.375 0.625 35 H 0.086 0.914 36 H 0.120 0.880 37 H 0.286 0.714 38 H 0.098 0.902 39 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.301 -6.630 1.170 11.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.048 3.952 3 H 0.076 0.924 4 O -0.350 6.350 5 C -0.083 4.083 6 N -0.103 5.103 7 C -0.140 4.140 8 N -0.343 5.343 9 C 0.380 3.620 10 O -0.416 6.416 11 C -0.285 4.285 12 C -0.084 4.084 13 C -0.197 4.197 14 C 0.125 3.875 15 C -0.472 4.472 16 H 0.103 0.897 17 C -0.146 4.146 18 N -0.396 5.396 19 Si 0.737 3.263 20 H -0.190 1.190 21 H -0.200 1.200 22 H -0.183 1.183 23 C -0.257 4.257 24 C -0.040 4.040 25 H 0.082 0.918 26 H 0.079 0.921 27 H 0.081 0.919 28 H 0.216 0.784 29 H 0.108 0.892 30 H 0.068 0.932 31 H 0.096 0.904 32 H 0.046 0.954 33 H 0.094 0.906 34 H 0.214 0.786 35 H 0.104 0.896 36 H 0.137 0.863 37 H 0.097 0.903 38 H 0.117 0.883 39 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -8.529 -7.627 0.743 11.466 hybrid contribution -0.826 1.562 1.247 2.163 sum -9.355 -6.065 1.990 11.325 Atomic orbital electron populations 1.22517 0.96749 1.02489 1.02537 1.21634 0.91349 0.95959 0.86252 0.92438 1.86635 1.77089 1.56201 1.15047 1.22620 0.87968 1.01868 0.95883 1.62765 1.08743 0.95138 1.43635 1.22887 1.01708 0.97464 0.91985 1.45539 1.55013 1.07368 1.26339 1.18455 0.76180 0.86321 0.81068 1.90651 1.55657 1.65764 1.29567 1.18880 1.14913 0.92900 1.01793 1.20463 0.97989 0.95109 0.94832 1.20965 1.01989 0.94729 1.02011 1.17779 0.87117 0.92379 0.90222 1.19858 1.37459 0.96532 0.93320 0.89696 1.26089 0.91925 1.01139 0.95466 1.69743 1.31911 1.38007 0.99955 0.86213 0.79555 0.81536 0.78997 1.18962 1.20035 1.18258 1.20719 1.08148 0.94699 1.02158 1.20353 0.93557 0.94198 0.95929 0.91824 0.92081 0.91947 0.78383 0.89228 0.93174 0.90350 0.95363 0.90583 0.78636 0.89622 0.86257 0.90270 0.88337 0.87978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.84 9.53 37.16 0.35 -1.48 16 2 C 0.11 1.46 3.63 -26.73 -0.10 1.37 16 3 H 0.06 0.91 7.47 -51.92 -0.39 0.52 16 4 O -0.55 -8.37 13.27 -35.23 -0.47 -8.84 16 5 C 0.04 0.58 4.85 -3.82 -0.02 0.57 16 6 N -0.29 -4.64 4.52 -121.13 -0.55 -5.18 16 7 C 0.01 0.10 9.96 60.06 0.60 0.70 16 8 N -0.59 -10.47 3.97 30.48 0.12 -10.35 16 9 C 0.59 12.78 7.74 -12.42 -0.10 12.68 16 10 O -0.54 -13.48 16.65 5.29 0.09 -13.40 16 11 C -0.28 -6.35 5.89 -104.73 -0.62 -6.97 16 12 C -0.06 -1.42 9.47 -39.61 -0.38 -1.79 16 13 C -0.18 -4.30 8.63 -39.27 -0.34 -4.64 16 14 C 0.13 3.24 5.58 -106.81 -0.60 2.64 16 15 C -0.44 -10.96 9.04 -37.75 -0.34 -11.31 16 16 H 0.08 2.01 7.91 -52.48 -0.42 1.59 16 17 C 0.07 1.73 5.14 -17.31 -0.09 1.64 16 18 N -0.77 -18.38 10.95 55.56 0.61 -17.77 16 19 Si 0.91 17.13 29.60 -169.99 -5.03 12.10 16 20 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 21 H -0.28 -5.06 7.11 56.52 0.40 -4.66 16 22 H -0.26 -4.83 7.11 56.52 0.40 -4.42 16 23 C -0.24 -5.72 9.73 -39.27 -0.38 -6.10 16 24 C -0.02 -0.50 9.52 -39.61 -0.38 -0.87 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.06 0.56 8.14 -51.92 -0.42 0.13 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.37 4.29 9.08 45.56 0.41 4.71 16 29 H 0.09 1.06 8.08 -51.93 -0.42 0.64 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.87 8.13 -51.93 -0.42 0.45 16 32 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.37 5.85 6.83 -185.16 -1.26 4.59 16 35 H 0.09 1.59 6.37 -52.49 -0.33 1.26 16 36 H 0.12 2.93 6.16 -52.49 -0.32 2.60 16 37 H 0.29 6.12 8.29 -40.82 -0.34 5.78 16 38 H 0.10 2.21 8.06 -52.48 -0.42 1.79 16 39 H 0.10 2.34 7.63 -52.49 -0.40 1.94 16 LS Contribution 331.86 15.07 5.00 5.00 Total: -1.00 -30.37 331.86 -8.25 -38.62 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: -5.65 Total: 13.38 kcal Atomic # 6 Polarization: -11.19 SS G_CDS: -2.38 Total: -13.57 kcal Atomic # 7 Polarization: -33.49 SS G_CDS: 0.18 Total: -33.30 kcal Atomic # 8 Polarization: -21.85 SS G_CDS: -0.38 Total: -22.23 kcal Atomic # 14 Polarization: 17.13 SS G_CDS: -5.03 Total: 12.10 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.37 -8.25 -38.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000910153564.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.196 kcal (2) G-P(sol) polarization free energy of solvation -30.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds