Wall clock time and date at job start Tue Mar 31 2020 00:10:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46685 * 2 1 4 4 O 1.42891 * 109.47189 * 120.00149 * 2 1 3 5 5 N 1.41604 * 114.00030 * 155.00030 * 4 2 1 6 6 C 1.34770 * 120.00169 * 180.02562 * 5 4 2 7 7 O 1.21591 * 120.00052 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00154 * 179.97438 * 6 5 4 9 9 C 1.39949 * 120.00321 * 185.31529 * 8 6 5 10 10 C 1.38861 * 120.06903 * 33.26620 * 9 8 6 11 11 C 1.38116 * 119.93328 * 180.02562 * 10 9 8 12 12 C 1.38287 * 120.06466 * 0.02562 * 11 10 9 13 13 C 1.50697 * 119.92484 * 179.97438 * 12 11 10 14 14 C 1.50705 * 109.46885 * 90.00657 * 13 12 11 15 15 H 1.07994 * 120.00113 * 359.97438 * 14 13 12 16 16 C 1.37877 * 119.99828 * 180.27270 * 14 13 12 17 17 N 1.31520 * 119.99931 * 179.72578 * 16 14 13 18 18 Si 1.86801 * 120.00306 * 359.72228 * 16 14 13 19 19 H 1.48494 * 109.47134 * 89.99950 * 18 16 14 20 20 H 1.48497 * 109.47044 * 210.00262 * 18 16 14 21 21 H 1.48500 * 109.46820 * 329.99953 * 18 16 14 22 22 C 1.38274 * 120.14273 * 0.23815 * 12 11 10 23 23 C 1.38122 * 120.06958 * 359.48491 * 22 12 11 24 24 H 1.09003 * 109.47162 * 299.99711 * 1 2 3 25 25 H 1.08998 * 109.47579 * 59.99662 * 1 2 3 26 26 H 1.08998 * 109.47242 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46731 * 240.00094 * 2 1 3 28 28 H 1.09001 * 109.46428 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.47668 * 299.99984 * 3 2 1 30 30 H 1.08998 * 109.47459 * 60.00541 * 3 2 1 31 31 H 0.96995 * 119.99794 * 359.97438 * 5 4 2 32 32 H 0.96997 * 119.99690 * 5.31322 * 8 6 5 33 33 H 1.08005 * 120.03723 * 0.02562 * 10 9 8 34 34 H 1.08000 * 119.96795 * 180.02562 * 11 10 9 35 35 H 1.08998 * 109.47970 * 330.00567 * 13 12 11 36 36 H 1.09009 * 109.46993 * 210.00326 * 13 12 11 37 37 H 0.96997 * 119.99879 * 179.97438 * 17 16 14 38 38 H 1.07997 * 119.96757 * 179.71689 * 22 12 11 39 39 H 1.07994 * 120.04007 * 180.25147 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 2.0063 -0.6736 1.1667 5 7 3.3037 -1.2232 1.0251 6 6 3.8707 -1.8858 2.0526 7 8 3.2684 -2.0113 3.1014 8 7 5.1053 -2.4093 1.9177 9 6 5.6495 -3.1915 2.9426 10 6 4.8238 -3.9943 3.7184 11 6 5.3638 -4.7648 4.7295 12 6 6.7253 -4.7369 4.9700 13 6 7.3111 -5.5784 6.0743 14 6 7.6899 -6.9310 5.5282 15 1 7.5228 -7.1585 4.4858 16 6 8.2443 -7.8800 6.3607 17 7 8.5699 -9.0622 5.8853 18 14 8.5329 -7.4866 8.1639 19 1 7.3297 -7.8589 8.9505 20 1 9.7039 -8.2552 8.6569 21 1 8.7945 -6.0329 8.3176 22 6 7.5496 -3.9344 4.2028 23 6 7.0164 -3.1659 3.1864 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 3.1299 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6767 1.9564 0.8900 31 1 3.7840 -1.1234 0.1884 32 1 5.6166 -2.2438 1.1102 33 1 3.7602 -4.0163 3.5314 34 1 4.7221 -5.3897 5.3330 35 1 6.5742 -5.7005 6.8681 36 1 8.1980 -5.0867 6.4744 37 1 8.9602 -9.7297 6.4709 38 1 8.6119 -3.9113 4.3960 39 1 7.6611 -2.5424 2.5849 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932565246.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:10:55 Heat of formation + Delta-G solvation = 0.214602 kcal Electronic energy + Delta-G solvation = -20528.642893 eV Core-core repulsion = 17245.607946 eV Total energy + Delta-G solvation = -3283.034947 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.42826 -38.73529 -37.82441 -34.87503 -33.96055 -32.93439 -31.47599 -30.34001 -30.16807 -27.75600 -26.83974 -23.20571 -22.37344 -22.13686 -21.31799 -20.08081 -18.58590 -18.50215 -16.86923 -16.72933 -15.95462 -15.35005 -15.02835 -14.88470 -14.49744 -14.07689 -13.94452 -13.89263 -13.22246 -12.89665 -12.80628 -12.71619 -12.47725 -12.41938 -12.29599 -11.67257 -11.53829 -11.46614 -11.22488 -10.83648 -10.47928 -10.30465 -10.14954 -9.88882 -9.57029 -9.29758 -9.12302 -8.54810 -8.30049 -7.37504 -6.04097 -4.02766 1.34720 1.94431 2.05836 3.14335 3.32394 3.39818 3.43227 3.60229 4.12921 4.29494 4.43680 4.45126 4.48232 4.57307 5.07110 5.23950 5.27730 5.28403 5.31779 5.39995 5.53921 5.63728 5.68643 5.85658 5.97339 6.00786 6.15476 6.34940 6.60443 6.65096 6.85232 6.97423 6.99943 7.08834 7.12797 7.62501 7.65171 7.74759 7.77859 8.48506 8.53524 9.01566 9.56563 11.08838 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.049070 B = 0.002769 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.473114 B =10111.131770 C =10238.808075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.052 3.948 3 C -0.178 4.178 4 O -0.120 6.120 5 N -0.616 5.616 6 C 0.717 3.283 7 O -0.552 6.552 8 N -0.673 5.673 9 C 0.129 3.871 10 C -0.116 4.116 11 C -0.103 4.103 12 C -0.039 4.039 13 C 0.014 3.986 14 C -0.511 4.511 15 H 0.074 0.926 16 C 0.068 3.932 17 N -0.901 5.901 18 Si 0.878 3.122 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.264 1.264 22 C -0.104 4.104 23 C -0.143 4.143 24 H 0.069 0.931 25 H 0.079 0.921 26 H 0.068 0.932 27 H 0.076 0.924 28 H 0.059 0.941 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.401 0.599 32 H 0.403 0.597 33 H 0.127 0.873 34 H 0.123 0.877 35 H 0.024 0.976 36 H 0.028 0.972 37 H 0.264 0.736 38 H 0.124 0.876 39 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.670 19.911 -14.977 27.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.006 4.006 3 C -0.235 4.235 4 O -0.123 6.123 5 N -0.321 5.321 6 C 0.418 3.582 7 O -0.426 6.426 8 N -0.324 5.324 9 C 0.036 3.964 10 C -0.136 4.136 11 C -0.122 4.122 12 C -0.040 4.040 13 C -0.023 4.023 14 C -0.549 4.549 15 H 0.092 0.908 16 C -0.133 4.133 17 N -0.540 5.540 18 Si 0.705 3.295 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.189 1.189 22 C -0.123 4.123 23 C -0.163 4.163 24 H 0.088 0.912 25 H 0.098 0.902 26 H 0.087 0.913 27 H 0.094 0.906 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.241 0.759 32 H 0.237 0.763 33 H 0.145 0.855 34 H 0.141 0.859 35 H 0.042 0.958 36 H 0.046 0.954 37 H 0.073 0.927 38 H 0.141 0.859 39 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -11.356 19.647 -13.809 26.564 hybrid contribution 0.624 0.357 -0.286 0.774 sum -10.731 20.005 -14.095 26.721 Atomic orbital electron populations 1.21815 0.91550 1.03617 1.03340 1.22673 0.96085 0.92980 0.88904 1.22368 1.01815 0.96205 1.03162 1.90646 1.14654 1.73149 1.33844 1.46149 1.09503 1.60463 1.15982 1.15315 0.81451 0.78438 0.82984 1.90989 1.62651 1.62472 1.26440 1.42216 1.15442 1.53762 1.20971 1.17249 0.92221 0.94676 0.92213 1.21038 0.99921 0.95759 0.96906 1.20970 0.95131 0.98451 0.97661 1.20291 0.92865 0.93845 0.96994 1.18809 0.95931 0.95132 0.92449 1.20948 1.40866 0.94987 0.98085 0.90792 1.25007 0.94995 0.94798 0.98545 1.69904 1.43141 1.04930 1.35998 0.86802 0.78061 0.78999 0.85648 1.20170 1.21331 1.18892 1.20829 0.99801 0.96558 0.95121 1.20678 0.92815 1.02600 1.00227 0.91189 0.90243 0.91289 0.90594 0.92192 0.91190 0.91328 0.75896 0.76291 0.85485 0.85940 0.95794 0.95389 0.92659 0.85853 0.86597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.83 9.56 37.16 0.36 -0.47 16 2 C 0.05 0.35 3.47 -26.73 -0.09 0.26 16 3 C -0.18 -1.01 9.56 37.16 0.36 -0.65 16 4 O -0.12 -1.38 10.75 -29.62 -0.32 -1.70 16 5 N -0.62 -6.42 6.38 27.63 0.18 -6.24 16 6 C 0.72 10.32 8.45 -86.92 -0.73 9.59 16 7 O -0.55 -10.72 14.43 -12.86 -0.19 -10.90 16 8 N -0.67 -8.43 5.35 -14.22 -0.08 -8.50 16 9 C 0.13 2.11 6.28 -83.69 -0.53 1.59 16 10 C -0.12 -2.18 8.65 -39.40 -0.34 -2.52 16 11 C -0.10 -2.10 9.69 -39.61 -0.38 -2.48 16 12 C -0.04 -0.84 5.07 -104.59 -0.53 -1.37 16 13 C 0.01 0.34 4.17 -29.03 -0.12 0.22 16 14 C -0.51 -14.54 9.65 -34.44 -0.33 -14.88 16 15 H 0.07 2.30 7.98 -52.49 -0.42 1.88 16 16 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 17 N -0.90 -27.69 13.96 55.43 0.77 -26.92 16 18 Si 0.88 21.56 27.46 -169.99 -4.67 16.90 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 20 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 21 H -0.26 -6.22 6.55 56.52 0.37 -5.85 16 22 C -0.10 -1.96 9.69 -39.61 -0.38 -2.34 16 23 C -0.14 -2.26 9.96 -39.39 -0.39 -2.66 16 24 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 26 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.08 0.38 7.94 -51.93 -0.41 -0.04 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.40 2.43 8.45 -40.82 -0.34 2.09 16 32 H 0.40 3.27 8.83 -40.82 -0.36 2.91 16 33 H 0.13 2.42 6.41 -52.48 -0.34 2.08 16 34 H 0.12 2.41 8.06 -52.49 -0.42 1.99 16 35 H 0.02 0.57 7.51 -51.93 -0.39 0.18 16 36 H 0.03 0.66 7.15 -51.92 -0.37 0.29 16 37 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 38 H 0.12 2.17 8.06 -52.49 -0.42 1.75 16 39 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 LS Contribution 334.38 15.07 5.04 5.04 Total: -1.00 -35.76 334.38 -8.09 -43.85 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -5.61 Total: 2.33 kcal Atomic # 6 Polarization: -10.63 SS G_CDS: -3.22 Total: -13.85 kcal Atomic # 7 Polarization: -42.54 SS G_CDS: 0.87 Total: -41.66 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: -0.50 Total: -12.60 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.67 Total: 16.90 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -35.76 -8.09 -43.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932565246.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.060 kcal (2) G-P(sol) polarization free energy of solvation -35.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds